RNA–Protein interactions for RNA: ENST00000309328.7

SSSCA1-201, Transcript of Sjogren syndrome/scleroderma autoantigen 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SSSCA1, Length 698 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSSCA1-201ENST00000309328 SULT1A2P50226 295 aa13.2□□□□□ -0.3
SSSCA1-201ENST00000309328 ZNF124Q15973 351 aa13.2□□□□□ -0.3
SSSCA1-201ENST00000309328 HAGHQ16775 308 aa13.2□□□□□ -0.3
SSSCA1-201ENST00000309328 Q6ZWC4 215 aa13.2□□□□□ -0.3
SSSCA1-201ENST00000309328 OR10J6PQ8NGY7 276 aa13.2□□□□□ -0.3
SSSCA1-201ENST00000309328 FAM213BQ8TBF2 198 aa13.2□□□□□ -0.3
SSSCA1-201ENST00000309328 ZMAT4Q9H898 229 aa13.2□□□□□ -0.3
SSSCA1-201ENST00000309328 PRKDCP78527 4128 aaKnown RBP13.2□□□□□ -0.3
SSSCA1-201ENST00000309328 HMGB3O15347 200 aaKnown RBP13.19□□□□□ -0.3
SSSCA1-201ENST00000309328 SNRPCP09234 159 aaKnown RBP13.19□□□□□ -0.3
SSSCA1-201ENST00000309328 PPT1P50897 306 aa13.19□□□□□ -0.3
SSSCA1-201ENST00000309328 NKX2-5P52952 324 aaPredicted RBP13.19□□□□□ -0.3
SSSCA1-201ENST00000309328 RANP62826 216 aaKnown RBP13.19□□□□□ -0.3
SSSCA1-201ENST00000309328 ZNF726P1Q15940 193 aa13.19□□□□□ -0.3
SSSCA1-201ENST00000309328 OR8A1Q8NGG7 326 aa13.19□□□□□ -0.3
SSSCA1-201ENST00000309328 MBD3L1Q8WWY6 194 aa13.19□□□□□ -0.3
SSSCA1-201ENST00000309328 SPATA25Q9BR10 227 aa13.19□□□□□ -0.3
SSSCA1-201ENST00000309328 Q9H3A6 140 aa13.19□□□□□ -0.3
SSSCA1-201ENST00000309328 ARL2-SNX15V9GYD0 113 aa13.19□□□□□ -0.3
SSSCA1-201ENST00000309328 A0A1W2PRE2 83 aa13.18□□□□□ -0.3
SSSCA1-201ENST00000309328 A8MTW9 85 aa13.18□□□□□ -0.3
SSSCA1-201ENST00000309328 AMBPP02760 352 aa13.18□□□□□ -0.3
SSSCA1-201ENST00000309328 H2AFB1P0C5Y9 115 aa13.18□□□□□ -0.3
SSSCA1-201ENST00000309328 RPL35AP18077 110 aaKnown RBP13.18□□□□□ -0.3
SSSCA1-201ENST00000309328 ICAM4Q14773 271 aa13.18□□□□□ -0.3
SSSCA1-201ENST00000309328 IGFL4Q6B9Z1 124 aa13.18□□□□□ -0.3
SSSCA1-201ENST00000309328 CMTM2Q8TAZ6 248 aa13.18□□□□□ -0.3
SSSCA1-201ENST00000309328 TP53TG1Q9Y2A0 90 aa13.18□□□□□ -0.3
SSSCA1-201ENST00000309328 SERTM2A0A1B0GWG4 89 aa13.17□□□□□ -0.3
SSSCA1-201ENST00000309328 HBE1P02100 147 aa13.17□□□□□ -0.3
SSSCA1-201ENST00000309328 SBSPONQ8IVN8 264 aa13.17□□□□□ -0.3
SSSCA1-201ENST00000309328 IQCF2Q8IXL9 164 aa13.17□□□□□ -0.3
SSSCA1-201ENST00000309328 OR4B1Q8NGF8 309 aa13.17□□□□□ -0.3
SSSCA1-201ENST00000309328 SFT2D1Q8WV19 159 aa13.17□□□□□ -0.3
SSSCA1-201ENST00000309328 TM2D3Q9BRN9 247 aa13.17□□□□□ -0.3
SSSCA1-201ENST00000309328 TRAV1-1A0A0B4J248 108 aa13.16□□□□□ -0.3
SSSCA1-201ENST00000309328 HLA-DMBP28068 263 aa13.16□□□□□ -0.3
SSSCA1-201ENST00000309328 FHITP49789 147 aa13.16□□□□□ -0.3
SSSCA1-201ENST00000309328 CNN1P51911 297 aaKnown RBP13.16□□□□□ -0.3
SSSCA1-201ENST00000309328 HIST1H1AQ02539 215 aaPredicted RBP13.16□□□□□ -0.3
SSSCA1-201ENST00000309328 SSX7Q7RTT5 188 aa13.16□□□□□ -0.3
SSSCA1-201ENST00000309328 EXOC3-AS1Q8N2X6 119 aa13.16□□□□□ -0.3
SSSCA1-201ENST00000309328 ODF3Q96PU9 254 aa13.16□□□□□ -0.3
SSSCA1-201ENST00000309328 TCEAL7Q9BRU2 100 aa13.16□□□□□ -0.3
SSSCA1-201ENST00000309328 PPP1R14DQ9NXH3 145 aa13.16□□□□□ -0.3
SSSCA1-201ENST00000309328 RBAKDNA6NC62 111 aa13.15□□□□□ -0.3
SSSCA1-201ENST00000309328 CA1P00915 261 aaPredicted RBP13.15□□□□□ -0.3
SSSCA1-201ENST00000309328 SLC25A5P05141 298 aaKnown RBP13.15□□□□□ -0.3
SSSCA1-201ENST00000309328 GDF5OSQ5U4N7 250 aa13.15□□□□□ -0.3
SSSCA1-201ENST00000309328 C5orf17Q8NAS9 161 aa13.15□□□□□ -0.3
SSSCA1-201ENST00000309328 PGPA6NDG6 321 aa13.14□□□□□ -0.31
SSSCA1-201ENST00000309328 ZNF705FA8MVS1 300 aaPredicted RBP13.14□□□□□ -0.31
SSSCA1-201ENST00000309328 F6UB75 175 aa13.14□□□□□ -0.31
SSSCA1-201ENST00000309328 M0R3E3 92 aa13.14□□□□□ -0.31
SSSCA1-201ENST00000309328 EIF3GO75821 320 aaKnown RBP eCLIP13.14□□□□□ -0.31
SSSCA1-201ENST00000309328 TSPOP30536 169 aa13.14□□□□□ -0.31
SSSCA1-201ENST00000309328 LINC00477Q96M19 166 aa13.14□□□□□ -0.31
SSSCA1-201ENST00000309328 RCHY1Q96PM5 261 aa13.14□□□□□ -0.31
SSSCA1-201ENST00000309328 PLA2G2EQ9NZK7 142 aa13.14□□□□□ -0.31
SSSCA1-201ENST00000309328 TRBV7-9A0A0J9YWB2 115 aa13.13□□□□□ -0.31
SSSCA1-201ENST00000309328 FBLL1A6NHQ2 334 aaKnown RBP13.13□□□□□ -0.31
SSSCA1-201ENST00000309328 NPIPB6E9PJ23 425 aa13.13□□□□□ -0.31
SSSCA1-201ENST00000309328 K7EQM0 130 aa13.13□□□□□ -0.31
SSSCA1-201ENST00000309328 FGF8P55075 233 aaPredicted RBP13.13□□□□□ -0.31
SSSCA1-201ENST00000309328 BLOC1S1P78537 153 aa13.13□□□□□ -0.31
SSSCA1-201ENST00000309328 TMEM78Q5T7P6 136 aa13.13□□□□□ -0.31
SSSCA1-201ENST00000309328 C9orf47Q6ZRZ4 202 aa13.13□□□□□ -0.31
SSSCA1-201ENST00000309328 ZNF705EA8MWA4 302 aaPredicted RBP13.12□□□□□ -0.31
SSSCA1-201ENST00000309328 BOLA2-SMG1P6H3BVE0 249 aa13.12□□□□□ -0.31
SSSCA1-201ENST00000309328 RNF183Q96D59 192 aa13.12□□□□□ -0.31
SSSCA1-201ENST00000309328 ASCL2Q99929 193 aa13.12□□□□□ -0.31
SSSCA1-201ENST00000309328 BOLA1Q9Y3E2 137 aa13.12□□□□□ -0.31
SSSCA1-201ENST00000309328 DIRC3C9JPN6 131 aa13.11□□□□□ -0.31
SSSCA1-201ENST00000309328 SPRY2O43597 315 aa13.11□□□□□ -0.31
SSSCA1-201ENST00000309328 NMBP08949 121 aa13.11□□□□□ -0.31
SSSCA1-201ENST00000309328 DEFB1P60022 68 aa13.11□□□□□ -0.31
SSSCA1-201ENST00000309328 PMS2P11Q13670 270 aa13.11□□□□□ -0.31
SSSCA1-201ENST00000309328 AMTNQ6UX39 209 aa13.11□□□□□ -0.31
SSSCA1-201ENST00000309328 ALKAL2Q6UX46 152 aa13.11□□□□□ -0.31
SSSCA1-201ENST00000309328 TXNDC17Q9BRA2 123 aa13.11□□□□□ -0.31
SSSCA1-201ENST00000309328 MANBALQ9NQG1 85 aa13.11□□□□□ -0.31
SSSCA1-201ENST00000309328 LENEPQ9Y5L5 61 aa13.11□□□□□ -0.31
SSSCA1-201ENST00000309328 FAM74A7A6NL05 159 aa13.1□□□□□ -0.31
SSSCA1-201ENST00000309328 PRAC2D3DTV9 90 aa13.1□□□□□ -0.31
SSSCA1-201ENST00000309328 F6UZH7 168 aa13.1□□□□□ -0.31
SSSCA1-201ENST00000309328 IGKV3-20P01619 116 aa13.1□□□□□ -0.31
SSSCA1-201ENST00000309328 TAGLN2P37802 199 aaKnown RBP13.1□□□□□ -0.31
SSSCA1-201ENST00000309328 LEPP41159 167 aa13.1□□□□□ -0.31
SSSCA1-201ENST00000309328 CDKN1BP46527 198 aa13.1□□□□□ -0.31
SSSCA1-201ENST00000309328 HIST1H2BAQ96A08 127 aa13.1□□□□□ -0.31
SSSCA1-201ENST00000309328 GGTLC3B5MD39 225 aa13.09□□□□□ -0.31
SSSCA1-201ENST00000309328 IFNA1P01562 189 aa13.09□□□□□ -0.31
SSSCA1-201ENST00000309328 IFNA7P01567 189 aa13.09□□□□□ -0.31
SSSCA1-201ENST00000309328 GIG44P09565 113 aaPredicted RBP13.09□□□□□ -0.31
SSSCA1-201ENST00000309328 SUMO1P63165 101 aaKnown RBP13.09□□□□□ -0.31
SSSCA1-201ENST00000309328 DEFB135Q30KP9 77 aa13.09□□□□□ -0.31
SSSCA1-201ENST00000309328 IGF2BP2-AS1Q96M15 143 aa13.09□□□□□ -0.31
SSSCA1-201ENST00000309328 C20orf144Q9BQM9 153 aa13.09□□□□□ -0.31
SSSCA1-201ENST00000309328 ATG101Q9BSB4 218 aa13.09□□□□□ -0.31
SSSCA1-201ENST00000309328 TMPRSS5Q9H3S3 457 aa13.09□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 81.5 ms