RNA–Protein interactions for RNA: ENST00000307662.4

SYNPO-201, Transcript of synaptopodin, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SYNPO, Length 5,374 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-201ENST00000307662 LMO1P25800 156 aa13.99□□□□□ -0.17
SYNPO-201ENST00000307662 VWC2LB2RUY7 222 aa13.99□□□□□ -0.17
SYNPO-201ENST00000307662 M0R1W7 72 aa13.99□□□□□ -0.17
SYNPO-201ENST00000307662 IL15RAQ13261 267 aa13.99□□□□□ -0.17
SYNPO-201ENST00000307662 TMEM219Q86XT9 240 aa13.99□□□□□ -0.17
SYNPO-201ENST00000307662 SPACA3Q8IXA5 215 aa13.99□□□□□ -0.17
SYNPO-201ENST00000307662 CEND1Q8N111 149 aa13.99□□□□□ -0.17
SYNPO-201ENST00000307662 C1orf159Q96HA4 380 aa13.99□□□□□ -0.17
SYNPO-201ENST00000307662 ZNF625Q96I27 306 aaPredicted RBP13.99□□□□□ -0.17
SYNPO-201ENST00000307662 TRBV19A0A075B6N1 114 aa13.98□□□□□ -0.17
SYNPO-201ENST00000307662 HAPLN4Q86UW8 402 aa13.98□□□□□ -0.17
SYNPO-201ENST00000307662 TRPT1Q86TN4 253 aaKnown RBP13.98□□□□□ -0.17
SYNPO-201ENST00000307662 OR11H6Q8NGC7 330 aa13.98□□□□□ -0.17
SYNPO-201ENST00000307662 VOPP1Q96AW1 172 aa13.98□□□□□ -0.17
SYNPO-201ENST00000307662 KIR2DL5BA0A0G2JN68 375 aa13.98□□□□□ -0.17
SYNPO-201ENST00000307662 KIR2DL5BA0A0G2JPC4 375 aa13.98□□□□□ -0.17
SYNPO-201ENST00000307662 SIVA1O15304 175 aa13.98□□□□□ -0.17
SYNPO-201ENST00000307662 INAFM2P0DMQ5 153 aa13.98□□□□□ -0.17
SYNPO-201ENST00000307662 TAL2Q16559 108 aa13.98□□□□□ -0.17
SYNPO-201ENST00000307662 KIR2DL5AQ8N109 375 aa13.98□□□□□ -0.17
SYNPO-201ENST00000307662 SIGLEC8Q9NYZ4 499 aa13.97□□□□□ -0.17
SYNPO-201ENST00000307662 IFITM1P13164 125 aa13.97□□□□□ -0.17
SYNPO-201ENST00000307662 CDKN1BP46527 198 aa13.97□□□□□ -0.17
SYNPO-201ENST00000307662 FAM223BA6NKX1 122 aa13.97□□□□□ -0.17
SYNPO-201ENST00000307662 AZU1P20160 251 aa13.97□□□□□ -0.17
SYNPO-201ENST00000307662 PMVKQ15126 192 aa13.97□□□□□ -0.17
SYNPO-201ENST00000307662 DTX2Q86UW9 622 aa13.97□□□□□ -0.17
SYNPO-201ENST00000307662 FAM223AQ8IWN6 122 aa13.97□□□□□ -0.17
SYNPO-201ENST00000307662 CNOT1A5YKK6 2376 aaKnown RBP13.97□□□□□ -0.17
SYNPO-201ENST00000307662 TRGV1A0A0A0MS02 117 aa13.96□□□□□ -0.17
SYNPO-201ENST00000307662 IGLC7A0M8Q6 106 aa13.96□□□□□ -0.17
SYNPO-201ENST00000307662 SPANXDQ9BXN6 97 aa13.96□□□□□ -0.17
SYNPO-201ENST00000307662 C6orf226Q5I0X4 101 aa13.96□□□□□ -0.17
SYNPO-201ENST00000307662 TRAV13-1A0A0B4J241 112 aa13.96□□□□□ -0.18
SYNPO-201ENST00000307662 VWC2Q2TAL6 325 aa13.96□□□□□ -0.18
SYNPO-201ENST00000307662 USMG5Q96IX5 58 aa13.96□□□□□ -0.18
SYNPO-201ENST00000307662 ETV2O00321 342 aaPredicted RBP13.96□□□□□ -0.18
SYNPO-201ENST00000307662 MDS2Q8NDY4 140 aa13.96□□□□□ -0.18
SYNPO-201ENST00000307662 PTPRDP23468 1912 aa13.95□□□□□ -0.18
SYNPO-201ENST00000307662 LYPD2Q6UXB3 125 aa13.95□□□□□ -0.18
SYNPO-201ENST00000307662 DTX1Q86Y01 620 aa13.95□□□□□ -0.18
SYNPO-201ENST00000307662 RHPN1-AS1Q9BWJ2 59 aa13.94□□□□□ -0.18
SYNPO-201ENST00000307662 H3BMG7 143 aa13.94□□□□□ -0.18
SYNPO-201ENST00000307662 NDUFB8O95169 186 aa13.94□□□□□ -0.18
SYNPO-201ENST00000307662 COA6Q5JTJ3 125 aaKnown RBP13.94□□□□□ -0.18
SYNPO-201ENST00000307662 IL17RELQ6ZVW7 336 aa13.94□□□□□ -0.18
SYNPO-201ENST00000307662 EP300Q09472 2414 aaPredicted RBP13.94□□□□□ -0.18
SYNPO-201ENST00000307662 MED12Q93074 2177 aa13.94□□□□□ -0.18
SYNPO-201ENST00000307662 A0A087WX48 190 aa13.93□□□□□ -0.18
SYNPO-201ENST00000307662 FGF6P10767 208 aa13.93□□□□□ -0.18
SYNPO-201ENST00000307662 CMC4P56277 68 aaPredicted RBP13.93□□□□□ -0.18
SYNPO-201ENST00000307662 MRPL35Q9NZE8 188 aaKnown RBP13.93□□□□□ -0.18
SYNPO-201ENST00000307662 ZNRD1Q9P1U0 126 aa13.93□□□□□ -0.18
SYNPO-201ENST00000307662 K7ERJ3 54 aa13.93□□□□□ -0.18
SYNPO-201ENST00000307662 TMEM14CQ9P0S9 112 aa13.93□□□□□ -0.18
SYNPO-201ENST00000307662 WIPF3A6NGB9 483 aa13.93□□□□□ -0.18
SYNPO-201ENST00000307662 C3orf36Q3SXR2 165 aa13.93□□□□□ -0.18
SYNPO-201ENST00000307662 K7EN84 100 aa13.93□□□□□ -0.18
SYNPO-201ENST00000307662 SOCS3O14543 225 aa13.93□□□□□ -0.18
SYNPO-201ENST00000307662 HLA-DRB4P13762 266 aa13.93□□□□□ -0.18
SYNPO-201ENST00000307662 HLA-DRB4X5D2U9 266 aa13.93□□□□□ -0.18
SYNPO-201ENST00000307662 FNDC1Q4ZHG4 1894 aaPredicted RBP13.93□□□□□ -0.18
SYNPO-201ENST00000307662 CITED1Q99966 193 aa13.92□□□□□ -0.18
SYNPO-201ENST00000307662 PRO1854Q9UHT4 67 aa13.92□□□□□ -0.18
SYNPO-201ENST00000307662 IGHV3-53P01767 116 aa13.92□□□□□ -0.18
SYNPO-201ENST00000307662 ZNF833PQ6ZTB9 187 aa13.92□□□□□ -0.18
SYNPO-201ENST00000307662 NPYP01303 97 aa13.92□□□□□ -0.18
SYNPO-201ENST00000307662 KLF5Q13887 457 aaPredicted RBP13.92□□□□□ -0.18
SYNPO-201ENST00000307662 MBD3L4A6NDZ8 208 aaPredicted RBP13.91□□□□□ -0.18
SYNPO-201ENST00000307662 MBD3L3A6NE82 208 aaPredicted RBP13.91□□□□□ -0.18
SYNPO-201ENST00000307662 MBD3L5A6NJ08 208 aaPredicted RBP13.91□□□□□ -0.18
SYNPO-201ENST00000307662 MBD3L2Q8NHZ7 208 aaPredicted RBP13.91□□□□□ -0.18
SYNPO-201ENST00000307662 PRR25Q96S07 402 aa13.91□□□□□ -0.18
SYNPO-201ENST00000307662 UTF1Q5T230 341 aa13.91□□□□□ -0.18
SYNPO-201ENST00000307662 EFNA4P52798 201 aa13.91□□□□□ -0.18
SYNPO-201ENST00000307662 WIPF2Q8TF74 440 aaPredicted RBP13.91□□□□□ -0.18
SYNPO-201ENST00000307662 INSP01308 110 aa13.91□□□□□ -0.18
SYNPO-201ENST00000307662 VGLL1Q99990 258 aa13.91□□□□□ -0.18
SYNPO-201ENST00000307662 TCF20Q9UGU0 1960 aaKnown RBP13.9□□□□□ -0.18
SYNPO-201ENST00000307662 F8VRH5 84 aa13.9□□□□□ -0.18
SYNPO-201ENST00000307662 C1QTNF4Q9BXJ3 329 aa13.9□□□□□ -0.18
SYNPO-201ENST00000307662 TRAV26-2A0A0B4J265 109 aa13.9□□□□□ -0.18
SYNPO-201ENST00000307662 DAZ1Q9NQZ3 744 aaKnown RBP13.9□□□□□ -0.18
SYNPO-201ENST00000307662 CCL25O15444 150 aa13.9□□□□□ -0.18
SYNPO-201ENST00000307662 MORN5Q5VZ52 161 aa13.9□□□□□ -0.18
SYNPO-201ENST00000307662 DEFB125Q8N687 156 aa13.9□□□□□ -0.18
SYNPO-201ENST00000307662 ZC2HC1AQ96GY0 325 aa13.9□□□□□ -0.18
SYNPO-201ENST00000307662 THADAQ6YHU6 1953 aa13.9□□□□□ -0.19
SYNPO-201ENST00000307662 H3BRN7 92 aa13.89□□□□□ -0.19
SYNPO-201ENST00000307662 FXYD5Q96DB9 178 aa13.89□□□□□ -0.19
SYNPO-201ENST00000307662 I3L3M4 83 aa13.89□□□□□ -0.19
SYNPO-201ENST00000307662 NDUFS7O75251 213 aa13.89□□□□□ -0.19
SYNPO-201ENST00000307662 Q6ZVH6 145 aa13.89□□□□□ -0.19
SYNPO-201ENST00000307662 PYGO2Q9BRQ0 406 aa13.89□□□□□ -0.19
SYNPO-201ENST00000307662 H3BUX3 64 aa13.89□□□□□ -0.19
SYNPO-201ENST00000307662 C12orf74Q32Q52 190 aa13.89□□□□□ -0.19
SYNPO-201ENST00000307662 IGHG3P01860 377 aa13.89□□□□□ -0.19
SYNPO-201ENST00000307662 DKK1O94907 266 aa13.88□□□□□ -0.19
SYNPO-201ENST00000307662 WISP1O95388 367 aa13.88□□□□□ -0.19
SYNPO-201ENST00000307662 AMTNQ6UX39 209 aa13.88□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 80.8 ms