RNA–Protein interactions for RNA: ENST00000297405.9

CSMD3-201, Transcript of CUB and Sushi multiple domains 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSMD3, Length 13,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-201ENST00000297405 FAM236CP0DP71 79 aa3.98□□□□□ -1.77
CSMD3-201ENST00000297405 VDAC2P45880 294 aaPredicted RBP3.98□□□□□ -1.77
CSMD3-201ENST00000297405 TMEM14CQ9P0S9 112 aa3.98□□□□□ -1.77
CSMD3-201ENST00000297405 CENPVL3A0A0U1RRI6 287 aa3.98□□□□□ -1.77
CSMD3-201ENST00000297405 I3L3M4 83 aa3.98□□□□□ -1.77
CSMD3-201ENST00000297405 BUB3O43684 328 aa3.98□□□□□ -1.77
CSMD3-201ENST00000297405 CFC1BP0CG36 223 aa3.98□□□□□ -1.77
CSMD3-201ENST00000297405 CFC1P0CG37 223 aa3.98□□□□□ -1.77
CSMD3-201ENST00000297405 CCL5P13501 91 aa3.98□□□□□ -1.77
CSMD3-201ENST00000297405 TREML4Q6UXN2 200 aa3.98□□□□□ -1.77
CSMD3-201ENST00000297405 DPM3Q9P2X0 92 aa3.98□□□□□ -1.77
CSMD3-201ENST00000297405 LINC00527Q9UJ94 153 aa3.98□□□□□ -1.77
CSMD3-201ENST00000297405 B9A039 149 aa3.98□□□□□ -1.77
CSMD3-201ENST00000297405 TOMM7Q9P0U1 55 aa3.98□□□□□ -1.77
CSMD3-201ENST00000297405 FOXC1Q12948 553 aa3.98□□□□□ -1.77
CSMD3-201ENST00000297405 TMEM158Q8WZ71 300 aa3.98□□□□□ -1.77
CSMD3-201ENST00000297405 SLC25A53Q5H9E4 307 aa3.98□□□□□ -1.77
CSMD3-201ENST00000297405 IGLL1P15814 213 aa3.98□□□□□ -1.77
CSMD3-201ENST00000297405 COLCA1Q6ZS62 124 aa3.98□□□□□ -1.77
CSMD3-201ENST00000297405 ZNF329Q86UD4 541 aa3.98□□□□□ -1.77
CSMD3-201ENST00000297405 MAST4O15021 2626 aa3.98□□□□□ -1.77
CSMD3-201ENST00000297405 SMIM26A0A096LP01 95 aa3.98□□□□□ -1.77
CSMD3-201ENST00000297405 TMEM229AB2RXF0 380 aa3.98□□□□□ -1.77
CSMD3-201ENST00000297405 PIN1P1O15428 100 aa3.98□□□□□ -1.77
CSMD3-201ENST00000297405 MYF5P13349 255 aa3.98□□□□□ -1.77
CSMD3-201ENST00000297405 C5orf64Q2M2E5 130 aa3.98□□□□□ -1.77
CSMD3-201ENST00000297405 VSIRQ9H7M9 311 aa3.98□□□□□ -1.77
CSMD3-201ENST00000297405 IGHV3-43A0A0B4J1X8 118 aa3.97□□□□□ -1.77
CSMD3-201ENST00000297405 A4D1N5 150 aa3.97□□□□□ -1.77
CSMD3-201ENST00000297405 IGHV3-43DP0DP04 118 aa3.97□□□□□ -1.77
CSMD3-201ENST00000297405 CEACAM8P31997 349 aaPredicted RBP3.97□□□□□ -1.77
CSMD3-201ENST00000297405 TEX36Q5VZQ5 186 aa3.97□□□□□ -1.77
CSMD3-201ENST00000297405 Q6ZT83 130 aa3.97□□□□□ -1.77
CSMD3-201ENST00000297405 SERP2Q8N6R1 65 aa3.97□□□□□ -1.77
CSMD3-201ENST00000297405 NBEAL1Q6ZS30 2694 aa3.97□□□□□ -1.77
CSMD3-201ENST00000297405 CENPVL1A0A0U1RR11 272 aa3.97□□□□□ -1.77
CSMD3-201ENST00000297405 VN1R4Q7Z5H5 301 aa3.97□□□□□ -1.77
CSMD3-201ENST00000297405 PPP1R32Q7Z5V6 425 aa3.97□□□□□ -1.77
CSMD3-201ENST00000297405 RFLNBQ8N5W9 214 aa3.97□□□□□ -1.77
CSMD3-201ENST00000297405 RBAKDNA6NC62 111 aa3.97□□□□□ -1.77
CSMD3-201ENST00000297405 CECR9P0C854 216 aa3.97□□□□□ -1.77
CSMD3-201ENST00000297405 CYTL1Q9NRR1 136 aa3.97□□□□□ -1.77
CSMD3-201ENST00000297405 NBR2O15453 112 aa3.97□□□□□ -1.77
CSMD3-201ENST00000297405 DAD1P61803 113 aa3.97□□□□□ -1.77
CSMD3-201ENST00000297405 TFF3Q07654 80 aa3.97□□□□□ -1.77
CSMD3-201ENST00000297405 NTN3O00634 580 aaPredicted RBP3.97□□□□□ -1.77
CSMD3-201ENST00000297405 RPS28P62857 69 aaKnown RBP3.97□□□□□ -1.77
CSMD3-201ENST00000297405 LINC01555Q8NAE3 123 aa3.97□□□□□ -1.77
CSMD3-201ENST00000297405 TRAV12-1A0A0B4J245 112 aa3.97□□□□□ -1.77
CSMD3-201ENST00000297405 LY6DQ14210 128 aa3.97□□□□□ -1.77
CSMD3-201ENST00000297405 FAM219BQ5XKK7 198 aa3.97□□□□□ -1.77
CSMD3-201ENST00000297405 GFRALQ6UXV0 394 aa3.97□□□□□ -1.77
CSMD3-201ENST00000297405 PLAC1Q9HBJ0 212 aa3.97□□□□□ -1.77
CSMD3-201ENST00000297405 PRR13Q9NZ81 148 aa3.97□□□□□ -1.77
CSMD3-201ENST00000297405 SIT1Q9Y3P8 196 aa3.97□□□□□ -1.77
CSMD3-201ENST00000297405 J3QQQ9 107 aa3.97□□□□□ -1.77
CSMD3-201ENST00000297405 COX7A1P24310 79 aa3.97□□□□□ -1.77
CSMD3-201ENST00000297405 SIGLEC15Q6ZMC9 328 aa3.97□□□□□ -1.77
CSMD3-201ENST00000297405 C8orf31Q8N9H6 132 aa3.97□□□□□ -1.77
CSMD3-201ENST00000297405 SAA1P0DJI8 122 aaPredicted RBP3.97□□□□□ -1.77
CSMD3-201ENST00000297405 MBNL3Q9NUK0 354 aaKnown RBP3.97□□□□□ -1.77
CSMD3-201ENST00000297405 COL27A1Q8IZC6 1860 aaPredicted RBP3.97□□□□□ -1.77
CSMD3-201ENST00000297405 LTBRP36941 435 aa3.97□□□□□ -1.77
CSMD3-201ENST00000297405 CSRP3P50461 194 aa3.97□□□□□ -1.77
CSMD3-201ENST00000297405 HAMPP81172 84 aa3.97□□□□□ -1.77
CSMD3-201ENST00000297405 A0A0U1RQS6 177 aa3.97□□□□□ -1.77
CSMD3-201ENST00000297405 K7ENP7 123 aa3.97□□□□□ -1.77
CSMD3-201ENST00000297405 PEBP1P30086 187 aaKnown RBP3.97□□□□□ -1.77
CSMD3-201ENST00000297405 PSG4Q00888 419 aa3.97□□□□□ -1.77
CSMD3-201ENST00000297405 HCP5Q6MZN7 132 aa3.97□□□□□ -1.77
CSMD3-201ENST00000297405 CXorf67Q86X51 503 aaPredicted RBP3.97□□□□□ -1.77
CSMD3-201ENST00000297405 C12orf76Q8N812 135 aaPredicted RBP3.97□□□□□ -1.77
CSMD3-201ENST00000297405 FANCD2OSQ96PS1 177 aa3.97□□□□□ -1.77
CSMD3-201ENST00000297405 STAB1Q9NY15 2570 aa3.96□□□□□ -1.77
CSMD3-201ENST00000297405 IGHV3-15A0A0B4J1V0 119 aa3.96□□□□□ -1.77
CSMD3-201ENST00000297405 TRAV3A0A0B4J244 114 aa3.96□□□□□ -1.77
CSMD3-201ENST00000297405 EGR1P18146 543 aa3.96□□□□□ -1.77
CSMD3-201ENST00000297405 SUPT4H1P63272 117 aaKnown RBP3.96□□□□□ -1.77
CSMD3-201ENST00000297405 HIGD2BQ4VC39 106 aa3.96□□□□□ -1.77
CSMD3-201ENST00000297405 SH2D6Q7Z4S9 175 aa3.96□□□□□ -1.77
CSMD3-201ENST00000297405 PRR7Q8TB68 274 aa3.96□□□□□ -1.77
CSMD3-201ENST00000297405 LINC00479Q96M42 142 aa3.96□□□□□ -1.77
CSMD3-201ENST00000297405 SRSF3P84103 164 aaKnown RBP3.96□□□□□ -1.78
CSMD3-201ENST00000297405 RNF185Q96GF1 192 aa3.96□□□□□ -1.78
CSMD3-201ENST00000297405 LILRA3Q8N6C8 439 aaPredicted RBP3.96□□□□□ -1.78
CSMD3-201ENST00000297405 TRGV2A0A075B6R0 118 aa3.96□□□□□ -1.78
CSMD3-201ENST00000297405 A0A1W2PR77 199 aa3.96□□□□□ -1.78
CSMD3-201ENST00000297405 PROP1O75360 226 aa3.96□□□□□ -1.78
CSMD3-201ENST00000297405 TCL1BO95988 128 aa3.96□□□□□ -1.78
CSMD3-201ENST00000297405 ADCYAP1P18509 176 aa3.96□□□□□ -1.78
CSMD3-201ENST00000297405 PNRC2Q9NPJ4 139 aaKnown RBP3.96□□□□□ -1.78
CSMD3-201ENST00000297405 COX6A1P12074 109 aa3.96□□□□□ -1.78
CSMD3-201ENST00000297405 FAM110AQ9BQ89 295 aa3.96□□□□□ -1.78
CSMD3-201ENST00000297405 TRBV10-2A0A0K0K1G8 114 aa3.96□□□□□ -1.78
CSMD3-201ENST00000297405 GATA2P23769 480 aaPredicted RBP3.96□□□□□ -1.78
CSMD3-201ENST00000297405 MIR17HGQ75NE6 70 aa3.96□□□□□ -1.78
CSMD3-201ENST00000297405 MGAM2Q2M2H8 2515 aa3.96□□□□□ -1.78
CSMD3-201ENST00000297405 TRBV25-1A0A075B6N4 114 aa3.96□□□□□ -1.78
CSMD3-201ENST00000297405 BAALC-AS2P0C853 105 aa3.96□□□□□ -1.78
CSMD3-201ENST00000297405 LAIR2Q6ISS4 152 aa3.96□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 75.6 ms