RNA–Protein interactions for RNA: ENST00000297261.6

SHH-201, Transcript of sonic hedgehog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHH, Length 4,454 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-201ENST00000297261 GLMPQ8WWB7 406 aa12.37□□□□□ -0.43
SHH-201ENST00000297261 GEMIN7Q9H840 131 aaKnown RBP12.37□□□□□ -0.43
SHH-201ENST00000297261 IGF2RP11717 2491 aa12.37□□□□□ -0.43
SHH-201ENST00000297261 TRAV2A0A0B4J234 112 aa12.37□□□□□ -0.43
SHH-201ENST00000297261 NPIPB6E9PJ23 425 aa12.37□□□□□ -0.43
SHH-201ENST00000297261 SH2D1AO60880 128 aa12.37□□□□□ -0.43
SHH-201ENST00000297261 FAM231DQ6ZW35 169 aa12.37□□□□□ -0.43
SHH-201ENST00000297261 TRAV40A0A0B4J280 105 aa12.36□□□□□ -0.43
SHH-201ENST00000297261 K7EP34 96 aa12.36□□□□□ -0.43
SHH-201ENST00000297261 Q8NFD4 153 aa12.36□□□□□ -0.43
SHH-201ENST00000297261 TMEM262E9PQX1 116 aa12.36□□□□□ -0.43
SHH-201ENST00000297261 TMEM95Q3KNT9 176 aa12.36□□□□□ -0.43
SHH-201ENST00000297261 ZNF134P52741 427 aa12.36□□□□□ -0.43
SHH-201ENST00000297261 PRR20EP86478 221 aa12.36□□□□□ -0.43
SHH-201ENST00000297261 PRR20CP86479 221 aa12.36□□□□□ -0.43
SHH-201ENST00000297261 PRR20DP86480 221 aa12.36□□□□□ -0.43
SHH-201ENST00000297261 PRR20BP86481 221 aa12.36□□□□□ -0.43
SHH-201ENST00000297261 PRR20AP86496 221 aa12.36□□□□□ -0.43
SHH-201ENST00000297261 SYT8Q8NBV8 401 aa12.36□□□□□ -0.43
SHH-201ENST00000297261 MRAP2Q96G30 205 aa12.36□□□□□ -0.43
SHH-201ENST00000297261 VCX2Q9H322 139 aa12.36□□□□□ -0.43
SHH-201ENST00000297261 XIRP2A4UGR9 3374 aa12.35□□□□□ -0.43
SHH-201ENST00000297261 TIMM23O14925 209 aa12.35□□□□□ -0.43
SHH-201ENST00000297261 NBR2O15453 112 aa12.35□□□□□ -0.43
SHH-201ENST00000297261 AMTNQ6UX39 209 aa12.35□□□□□ -0.43
SHH-201ENST00000297261 WNT2P09544 360 aa12.35□□□□□ -0.43
SHH-201ENST00000297261 LAGE3Q14657 143 aa12.35□□□□□ -0.43
SHH-201ENST00000297261 TMEM200BQ69YZ2 307 aa12.35□□□□□ -0.43
SHH-201ENST00000297261 ZFAND6Q6FIF0 208 aa12.35□□□□□ -0.43
SHH-201ENST00000297261 SLC25A2Q9BXI2 301 aa12.35□□□□□ -0.43
SHH-201ENST00000297261 IGHV3-64A0A075B6Q5 118 aa12.35□□□□□ -0.43
SHH-201ENST00000297261 A0A1W2PPI3 338 aa12.35□□□□□ -0.43
SHH-201ENST00000297261 DLX4Q92988 240 aaPredicted RBP12.35□□□□□ -0.43
SHH-201ENST00000297261 AZU1P20160 251 aa12.35□□□□□ -0.43
SHH-201ENST00000297261 MEIG1Q5JSS6 88 aa12.35□□□□□ -0.43
SHH-201ENST00000297261 ATP5G2Q06055 141 aa12.34□□□□□ -0.43
SHH-201ENST00000297261 CIRBPQ14011 172 aaKnown RBP12.34□□□□□ -0.43
SHH-201ENST00000297261 NUP37Q8NFH4 326 aa12.34□□□□□ -0.43
SHH-201ENST00000297261 YPEL4Q96NS1 127 aa12.34□□□□□ -0.43
SHH-201ENST00000297261 PSMB11A5LHX3 300 aa12.34□□□□□ -0.43
SHH-201ENST00000297261 SEM1Q6ZVN7 128 aa12.34□□□□□ -0.43
SHH-201ENST00000297261 DSCAML1Q8TD84 2053 aa12.34□□□□□ -0.43
SHH-201ENST00000297261 MED12LQ86YW9 2145 aa12.34□□□□□ -0.43
SHH-201ENST00000297261 K7ERJ3 54 aa12.34□□□□□ -0.43
SHH-201ENST00000297261 TMEM249Q2WGJ8 235 aa12.34□□□□□ -0.43
SHH-201ENST00000297261 ORMDL2Q53FV1 153 aa12.34□□□□□ -0.43
SHH-201ENST00000297261 EEF1AKMT3Q96AZ1 226 aa12.34□□□□□ -0.43
SHH-201ENST00000297261 C11orf1Q9H5F2 150 aa12.34□□□□□ -0.43
SHH-201ENST00000297261 A0A1W2PPM0 123 aa12.33□□□□□ -0.43
SHH-201ENST00000297261 WFDC12Q8WWY7 111 aa12.33□□□□□ -0.43
SHH-201ENST00000297261 GFRA4Q9GZZ7 299 aa12.33□□□□□ -0.43
SHH-201ENST00000297261 NCOR2Q9Y618 2525 aa12.33□□□□□ -0.43
SHH-201ENST00000297261 H3BMG7 143 aa12.33□□□□□ -0.44
SHH-201ENST00000297261 PPP1R17O96001 155 aa12.33□□□□□ -0.44
SHH-201ENST00000297261 C1orf122Q6ZSJ8 110 aa12.33□□□□□ -0.44
SHH-201ENST00000297261 PIEZO1Q92508 2521 aa12.33□□□□□ -0.44
SHH-201ENST00000297261 IGHV3OR16-10A0A075B7F0 116 aa12.33□□□□□ -0.44
SHH-201ENST00000297261 RNASE4P34096 147 aaKnown RBP12.33□□□□□ -0.44
SHH-201ENST00000297261 PAPPA-AS1Q5QFB9 102 aa12.33□□□□□ -0.44
SHH-201ENST00000297261 CEP295Q9C0D2 2601 aa12.33□□□□□ -0.44
SHH-201ENST00000297261 TRAV12-3A0A0B4J271 114 aa12.33□□□□□ -0.44
SHH-201ENST00000297261 CSTL1Q9H114 145 aa12.33□□□□□ -0.44
SHH-201ENST00000297261 TMEM8BA6NDV4 472 aa12.32□□□□□ -0.44
SHH-201ENST00000297261 CT83Q5H943 113 aa12.32□□□□□ -0.44
SHH-201ENST00000297261 ZNF492Q9P255 531 aa12.32□□□□□ -0.44
SHH-201ENST00000297261 GAGE12HA6NDE8 117 aa12.32□□□□□ -0.44
SHH-201ENST00000297261 LY6EQ16553 131 aa12.32□□□□□ -0.44
SHH-201ENST00000297261 DUX4L9Q6RFH8 374 aaPredicted RBP12.32□□□□□ -0.44
SHH-201ENST00000297261 ODF3L1Q8IXM7 274 aa12.32□□□□□ -0.44
SHH-201ENST00000297261 FAM104BQ5XKR9 115 aa12.31□□□□□ -0.44
SHH-201ENST00000297261 TRGV3P03979 118 aa12.31□□□□□ -0.44
SHH-201ENST00000297261 RHOGP84095 191 aa12.31□□□□□ -0.44
SHH-201ENST00000297261 WT1-ASQ06250 92 aa12.31□□□□□ -0.44
SHH-201ENST00000297261 NCOR1P1Q9H4R4 102 aa12.31□□□□□ -0.44
SHH-201ENST00000297261 COL5A1P20908 1838 aaPredicted RBP12.31□□□□□ -0.44
SHH-201ENST00000297261 SIGLEC8Q9NYZ4 499 aa12.31□□□□□ -0.44
SHH-201ENST00000297261 TNFRSF6BO95407 300 aa12.31□□□□□ -0.44
SHH-201ENST00000297261 SUMO2P61956 95 aaKnown RBP12.31□□□□□ -0.44
SHH-201ENST00000297261 GAFA1Q96PS6 74 aa12.31□□□□□ -0.44
SHH-201ENST00000297261 PCP2Q8IVA1 136 aa12.3□□□□□ -0.44
SHH-201ENST00000297261 ZNF747Q9BV97 191 aa12.3□□□□□ -0.44
SHH-201ENST00000297261 NDUFA4L2Q9NRX3 87 aa12.3□□□□□ -0.44
SHH-201ENST00000297261 ERG28Q9UKR5 140 aa12.3□□□□□ -0.44
SHH-201ENST00000297261 SIGLEC9Q9Y336 463 aa12.3□□□□□ -0.44
SHH-201ENST00000297261 SRRM4A7MD48 611 aaKnown RBP12.3□□□□□ -0.44
SHH-201ENST00000297261 C15orf65H3BRN8 121 aa12.3□□□□□ -0.44
SHH-201ENST00000297261 TEX48A0A1B0GUV7 120 aa12.3□□□□□ -0.44
SHH-201ENST00000297261 TMEM178BH3BS89 294 aa12.3□□□□□ -0.44
SHH-201ENST00000297261 A0A0C4DFX4 3053 aa12.3□□□□□ -0.44
SHH-201ENST00000297261 E7EQL1 145 aa12.29□□□□□ -0.44
SHH-201ENST00000297261 RNASE1P07998 156 aaKnown RBP12.29□□□□□ -0.44
SHH-201ENST00000297261 CLEC2AQ6UVW9 174 aa12.29□□□□□ -0.44
SHH-201ENST00000297261 A0A0U1RRA0 63 aa12.29□□□□□ -0.44
SHH-201ENST00000297261 TAX1BP3O14907 124 aa12.29□□□□□ -0.44
SHH-201ENST00000297261 IGHV1-8P0DP01 117 aa12.29□□□□□ -0.44
SHH-201ENST00000297261 C19orf54Q5BKX5 351 aa12.29□□□□□ -0.44
SHH-201ENST00000297261 RAX2Q96IS3 184 aa12.29□□□□□ -0.44
SHH-201ENST00000297261 SLC50A1Q9BRV3 221 aa12.29□□□□□ -0.44
SHH-201ENST00000297261 DKK2Q9UBU2 259 aa12.29□□□□□ -0.44
SHH-201ENST00000297261 IGHV3OR16-12A0A075B7B8 117 aa12.29□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 216.1 ms