RNA–Protein interactions for RNA: ENST00000296581.10

LSM6-201, Transcript of LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM6, Length 2,259 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM6-201ENST00000296581 DERL1Q9BUN8 251 aa12.04□□□□□ -0.48
LSM6-201ENST00000296581 MYCNOSP40205 109 aa12.04□□□□□ -0.48
LSM6-201ENST00000296581 SUMO1P63165 101 aaKnown RBP12.04□□□□□ -0.48
LSM6-201ENST00000296581 PAFAH1B2P68402 229 aa12.04□□□□□ -0.48
LSM6-201ENST00000296581 Q6ZN92 141 aa12.04□□□□□ -0.48
LSM6-201ENST00000296581 IL17RELQ6ZVW7 336 aa12.04□□□□□ -0.48
LSM6-201ENST00000296581 SIGLECL1Q8N7X8 197 aa12.04□□□□□ -0.48
LSM6-201ENST00000296581 RPL15P61313 204 aaKnown RBP12.03□□□□□ -0.48
LSM6-201ENST00000296581 RPL23P62829 140 aaKnown RBP12.03□□□□□ -0.48
LSM6-201ENST00000296581 ZFAND3Q9H8U3 227 aa12.03□□□□□ -0.48
LSM6-201ENST00000296581 HIST1H1EP10412 219 aaKnown RBP12.03□□□□□ -0.48
LSM6-201ENST00000296581 TMEM95Q3KNT9 176 aa12.03□□□□□ -0.48
LSM6-201ENST00000296581 PRSS22Q9GZN4 317 aa12.03□□□□□ -0.48
LSM6-201ENST00000296581 MRPS12O15235 138 aaKnown RBP12.02□□□□□ -0.49
LSM6-201ENST00000296581 CRYBB3P26998 211 aa12.02□□□□□ -0.49
LSM6-201ENST00000296581 SRP14P37108 136 aaKnown RBP12.02□□□□□ -0.49
LSM6-201ENST00000296581 SPATA45Q537H7 98 aa12.02□□□□□ -0.49
LSM6-201ENST00000296581 CFAP161Q6P656 301 aa12.02□□□□□ -0.49
LSM6-201ENST00000296581 ZNF329Q86UD4 541 aa12.02□□□□□ -0.49
LSM6-201ENST00000296581 BPIFA4PQ86YQ2 179 aa12.02□□□□□ -0.49
LSM6-201ENST00000296581 TMEM86BQ8N661 226 aa12.02□□□□□ -0.49
LSM6-201ENST00000296581 NPFFR1Q9GZQ6 430 aa12.02□□□□□ -0.49
LSM6-201ENST00000296581 KLK15Q9H2R5 256 aa12.02□□□□□ -0.49
LSM6-201ENST00000296581 HECTD1Q9ULT8 2610 aa12.02□□□□□ -0.49
LSM6-201ENST00000296581 IGHG4P01861 327 aa12.02□□□□□ -0.49
LSM6-201ENST00000296581 IGLC2P0DOY2 106 aa12.02□□□□□ -0.49
LSM6-201ENST00000296581 IGLC3P0DOY3 106 aa12.02□□□□□ -0.49
LSM6-201ENST00000296581 PF4V1P10720 104 aa12.02□□□□□ -0.49
LSM6-201ENST00000296581 HINT1P49773 126 aaPredicted RBP12.02□□□□□ -0.49
LSM6-201ENST00000296581 ZNF702PQ9H963 129 aa12.02□□□□□ -0.49
LSM6-201ENST00000296581 RABAC1Q9UI14 185 aa12.02□□□□□ -0.49
LSM6-201ENST00000296581 TRAPPC1Q9Y5R8 145 aa12.02□□□□□ -0.49
LSM6-201ENST00000296581 TRBV20OR9-2A0A075B6H5 130 aa12.01□□□□□ -0.49
LSM6-201ENST00000296581 TMEM89A2RUT3 159 aa12.01□□□□□ -0.49
LSM6-201ENST00000296581 A6NJY4 79 aa12.01□□□□□ -0.49
LSM6-201ENST00000296581 BMPR1BO00238 502 aa12.01□□□□□ -0.49
LSM6-201ENST00000296581 BLNKQ8WV28 456 aa12.01□□□□□ -0.49
LSM6-201ENST00000296581 ZNF586Q9NXT0 402 aa12.01□□□□□ -0.49
LSM6-201ENST00000296581 TLN2Q9Y4G6 2542 aa12.01□□□□□ -0.49
LSM6-201ENST00000296581 MXRA5Q9NR99 2828 aa12.01□□□□□ -0.49
LSM6-201ENST00000296581 C9JCJ5 164 aa12□□□□□ -0.49
LSM6-201ENST00000296581 RAB9AP51151 201 aa12□□□□□ -0.49
LSM6-201ENST00000296581 VAMP3Q15836 100 aa12□□□□□ -0.49
LSM6-201ENST00000296581 GNB4Q9HAV0 340 aa12□□□□□ -0.49
LSM6-201ENST00000296581 YAE1D1Q9NRH1 226 aa12□□□□□ -0.49
LSM6-201ENST00000296581 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP12□□□□□ -0.49
LSM6-201ENST00000296581 A0A0G2JLM5 398 aa12□□□□□ -0.49
LSM6-201ENST00000296581 K7ERU9 68 aa12□□□□□ -0.49
LSM6-201ENST00000296581 ANAPC16Q96DE5 110 aa12□□□□□ -0.49
LSM6-201ENST00000296581 AKAP9Q99996 3911 aa12□□□□□ -0.49
LSM6-201ENST00000296581 TRAV34A0A0B4J273 112 aa11.99□□□□□ -0.49
LSM6-201ENST00000296581 IGHV3-35A0A0C4DH35 117 aa11.99□□□□□ -0.49
LSM6-201ENST00000296581 PSMB8P28062 276 aa11.99□□□□□ -0.49
LSM6-201ENST00000296581 LINC00310P59036 64 aa11.99□□□□□ -0.49
LSM6-201ENST00000296581 KCNIP4Q6PIL6 250 aa11.99□□□□□ -0.49
LSM6-201ENST00000296581 Q8N2B8 174 aa11.99□□□□□ -0.49
LSM6-201ENST00000296581 OR4F17Q8NGA8 305 aa11.99□□□□□ -0.49
LSM6-201ENST00000296581 WFDC12Q8WWY7 111 aa11.99□□□□□ -0.49
LSM6-201ENST00000296581 TP53TG3Q9ULZ0 132 aa11.99□□□□□ -0.49
LSM6-201ENST00000296581 LOC102724200A0A096LPH7 203 aaPredicted RBP11.99□□□□□ -0.49
LSM6-201ENST00000296581 ESDP10768 282 aa11.99□□□□□ -0.49
LSM6-201ENST00000296581 ARL3P36405 182 aa11.99□□□□□ -0.49
LSM6-201ENST00000296581 Q8N976 141 aa11.99□□□□□ -0.49
LSM6-201ENST00000296581 TMEM190Q8WZ59 177 aa11.99□□□□□ -0.49
LSM6-201ENST00000296581 LY96Q9Y6Y9 160 aa11.99□□□□□ -0.49
LSM6-201ENST00000296581 TRBV19A0A075B6N1 114 aa11.98□□□□□ -0.49
LSM6-201ENST00000296581 CLPSL1A2RUU4 121 aa11.98□□□□□ -0.49
LSM6-201ENST00000296581 HELTA6NFD8 242 aa11.98□□□□□ -0.49
LSM6-201ENST00000296581 RIPPLY3P57055 190 aa11.98□□□□□ -0.49
LSM6-201ENST00000296581 PRR27Q6MZM9 219 aa11.98□□□□□ -0.49
LSM6-201ENST00000296581 Q9H3A6 140 aa11.98□□□□□ -0.49
LSM6-201ENST00000296581 GRIFINA4D1Z8 144 aa11.98□□□□□ -0.49
LSM6-201ENST00000296581 PGPA6NDG6 321 aa11.98□□□□□ -0.49
LSM6-201ENST00000296581 H3BTX0 84 aa11.98□□□□□ -0.49
LSM6-201ENST00000296581 OTORQ9NRC9 128 aa11.98□□□□□ -0.49
LSM6-201ENST00000296581 MRPS16Q9Y3D3 137 aaKnown RBP11.98□□□□□ -0.49
LSM6-201ENST00000296581 PGPEP1LA6NFU8 196 aa11.97□□□□□ -0.49
LSM6-201ENST00000296581 PEX7O00628 323 aa11.97□□□□□ -0.49
LSM6-201ENST00000296581 TRBV12-3P01733 135 aa11.97□□□□□ -0.49
LSM6-201ENST00000296581 RPL7P18124 248 aaKnown RBP11.97□□□□□ -0.49
LSM6-201ENST00000296581 LCNL1Q6ZST4 164 aa11.97□□□□□ -0.49
LSM6-201ENST00000296581 EPDR1Q9UM22 224 aa11.97□□□□□ -0.49
LSM6-201ENST00000296581 IGHV3OR16-8A0A075B7F1 116 aa11.97□□□□□ -0.49
LSM6-201ENST00000296581 IGHV3-11P01762 117 aa11.97□□□□□ -0.49
LSM6-201ENST00000296581 SLC25A5P05141 298 aaKnown RBP11.97□□□□□ -0.49
LSM6-201ENST00000296581 TSPOP30536 169 aa11.97□□□□□ -0.49
LSM6-201ENST00000296581 C5orf17Q8NAS9 161 aa11.97□□□□□ -0.49
LSM6-201ENST00000296581 OR4X2Q8NGF9 303 aa11.97□□□□□ -0.49
LSM6-201ENST00000296581 OCC1Q8TAD7 63 aa11.97□□□□□ -0.49
LSM6-201ENST00000296581 BTF3L4Q96K17 158 aa11.97□□□□□ -0.49
LSM6-201ENST00000296581 TMEM160Q9NX00 188 aa11.97□□□□□ -0.49
LSM6-201ENST00000296581 RNF114Q9Y508 228 aa11.97□□□□□ -0.49
LSM6-201ENST00000296581 DIRC3C9JPN6 131 aa11.96□□□□□ -0.49
LSM6-201ENST00000296581 SERF1AO75920 110 aa11.96□□□□□ -0.49
LSM6-201ENST00000296581 PDE6HQ13956 83 aa11.96□□□□□ -0.49
LSM6-201ENST00000296581 LYPD1Q8N2G4 141 aa11.96□□□□□ -0.49
LSM6-201ENST00000296581 DUX5Q96PT3 197 aa11.96□□□□□ -0.49
LSM6-201ENST00000296581 CDC42EP3Q9UKI2 254 aa11.96□□□□□ -0.49
LSM6-201ENST00000296581 ACANP16112 2415 aa11.95□□□□□ -0.5
LSM6-201ENST00000296581 SONP18583 2426 aaKnown RBP11.95□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 83.8 ms