RNA–Protein interactions for RNA: ENST00000631023.2

CLN3-240, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-240ENST00000631023 IL17DQ8TAD2 202 aa15.14■□□□□ 0.01
CLN3-240ENST00000631023 A0A0J9YX75 114 aa15.13■□□□□ 0.01
CLN3-240ENST00000631023 GUK1Q16774 197 aa15.13■□□□□ 0.01
CLN3-240ENST00000631023 RNF182Q8N6D2 247 aa15.13■□□□□ 0.01
CLN3-240ENST00000631023 ZNF738Q8NE65 137 aa15.13■□□□□ 0.01
CLN3-240ENST00000631023 F6UB75 175 aa15.12■□□□□ 0.01
CLN3-240ENST00000631023 IGKV3-20P01619 116 aa15.12■□□□□ 0.01
CLN3-240ENST00000631023 IGLC2P0DOY2 106 aa15.12■□□□□ 0.01
CLN3-240ENST00000631023 C4BPBP20851 252 aa15.12■□□□□ 0.01
CLN3-240ENST00000631023 ZNF266Q14584 549 aa15.12■□□□□ 0.01
CLN3-240ENST00000631023 GCSAMLQ5JQS6 135 aa15.12■□□□□ 0.01
CLN3-240ENST00000631023 WFDC1Q9HC57 220 aa15.12■□□□□ 0.01
CLN3-240ENST00000631023 TMEM14CQ9P0S9 112 aa15.12■□□□□ 0.01
CLN3-240ENST00000631023 DUSP14O95147 198 aaKnown RBP15.11■□□□□ 0.01
CLN3-240ENST00000631023 PSG3Q16557 428 aa15.11■□□□□ 0.01
CLN3-240ENST00000631023 FFAR4Q5NUL3 377 aa15.11■□□□□ 0.01
CLN3-240ENST00000631023 MRPL32Q9BYC8 188 aaKnown RBP15.11■□□□□ 0.01
CLN3-240ENST00000631023 ZNF331Q9NQX6 463 aaPredicted RBP15.11■□□□□ 0.01
CLN3-240ENST00000631023 CLEC5AQ9NY25 188 aa15.11■□□□□ 0.01
CLN3-240ENST00000631023 FXYD6-FXYD2A0A087WZ82 144 aa15.11■□□□□ 0.01
CLN3-240ENST00000631023 SNRPCP09234 159 aaKnown RBP15.11■□□□□ 0.01
CLN3-240ENST00000631023 XCL2Q9UBD3 114 aa15.11■□□□□ 0.01
CLN3-240ENST00000631023 DNAH7Q8WXX0 4024 aa15.1■□□□□ 0.01
CLN3-240ENST00000631023 A0A0J9YWU9 116 aa15.1■□□□□ 0.01
CLN3-240ENST00000631023 H3BQ15 152 aa15.1■□□□□ 0.01
CLN3-240ENST00000631023 PSG9Q00887 426 aa15.1■□□□□ 0.01
CLN3-240ENST00000631023 HIST1H1EP10412 219 aaKnown RBP15.09■□□□□ 0.01
CLN3-240ENST00000631023 CSNK1G2-AS1Q8NCQ2 148 aa15.09■□□□□ 0.01
CLN3-240ENST00000631023 H3BTX0 84 aa15.08■□□□□ 0
CLN3-240ENST00000631023 HLA-DMBP28068 263 aa15.08■□□□□ 0
CLN3-240ENST00000631023 MIR17HGQ75NE6 70 aa15.08■□□□□ 0
CLN3-240ENST00000631023 SAT2Q96F10 170 aaPredicted RBP15.08■□□□□ 0
CLN3-240ENST00000631023 ZNF586Q9NXT0 402 aa15.08■□□□□ 0
CLN3-240ENST00000631023 TNFSF18Q9UNG2 199 aa15.08■□□□□ 0
CLN3-240ENST00000631023 FUT9Q9Y231 359 aa15.08■□□□□ 0
CLN3-240ENST00000631023 TIMM9Q9Y5J7 89 aa15.08■□□□□ 0
CLN3-240ENST00000631023 ZNF253O75346 499 aa15.07■□□□□ 0
CLN3-240ENST00000631023 OR8A1Q8NGG7 326 aa15.07■□□□□ 0
CLN3-240ENST00000631023 RPUSD4Q96CM3 377 aaKnown RBP15.07■□□□□ 0
CLN3-240ENST00000631023 SLC25A2Q9BXI2 301 aa15.07■□□□□ 0
CLN3-240ENST00000631023 SLC17A3O00476 420 aa15.07■□□□□ 0
CLN3-240ENST00000631023 CNN1P51911 297 aaKnown RBP15.07■□□□□ 0
CLN3-240ENST00000631023 FXYD7P58549 80 aa15.07■□□□□ 0
CLN3-240ENST00000631023 RHOBP62745 196 aa15.07■□□□□ 0
CLN3-240ENST00000631023 PDE6HQ13956 83 aa15.07■□□□□ 0
CLN3-240ENST00000631023 ACOT6Q3I5F7 207 aaPredicted RBP15.07■□□□□ 0
CLN3-240ENST00000631023 CASC10Q5T4H9 136 aa15.07■□□□□ 0
CLN3-240ENST00000631023 FAM167A-AS1Q96KT0 104 aa15.07■□□□□ 0
CLN3-240ENST00000631023 MFFQ9GZY8 342 aa15.07■□□□□ 0
CLN3-240ENST00000631023 OR51M1Q9H341 326 aa15.07■□□□□ 0
CLN3-240ENST00000631023 TRBV19A0A075B6N1 114 aa15.06■□□□□ 0
CLN3-240ENST00000631023 A8MTW9 85 aa15.06■□□□□ 0
CLN3-240ENST00000631023 PYYP10082 97 aa15.06■□□□□ 0
CLN3-240ENST00000631023 SLC35B3Q9H1N7 401 aa15.06■□□□□ 0
CLN3-240ENST00000631023 RNF222A6NCQ9 220 aa15.05■□□□□ -0
CLN3-240ENST00000631023 ZNF705EA8MWA4 302 aaPredicted RBP15.05■□□□□ -0
CLN3-240ENST00000631023 AMBPP02760 352 aa15.05■□□□□ -0
CLN3-240ENST00000631023 ZNF705DP0CH99 300 aaPredicted RBP15.05■□□□□ -0
CLN3-240ENST00000631023 ZNF705BP0CI00 300 aaPredicted RBP15.05■□□□□ -0
CLN3-240ENST00000631023 MIFP14174 115 aa15.05■□□□□ -0
CLN3-240ENST00000631023 HIST1H1AQ02539 215 aaPredicted RBP15.05■□□□□ -0
CLN3-240ENST00000631023 HSD17B11Q8NBQ5 300 aa15.05■□□□□ -0
CLN3-240ENST00000631023 BLNKQ8WV28 456 aa15.05■□□□□ -0
CLN3-240ENST00000631023 PAXXQ9BUH6 204 aa15.05■□□□□ -0
CLN3-240ENST00000631023 C11orf68Q9H3H3 251 aaKnown RBP15.05■□□□□ -0
CLN3-240ENST00000631023 PPP1R14DQ9NXH3 145 aa15.05■□□□□ -0
CLN3-240ENST00000631023 BORCS7-ASMTA0A0B4J1R7 106 aa15.04■□□□□ -0
CLN3-240ENST00000631023 M6PRP20645 277 aa15.04■□□□□ -0
CLN3-240ENST00000631023 TAS2R45P59539 299 aa15.04■□□□□ -0
CLN3-240ENST00000631023 ZFAND6Q6FIF0 208 aa15.04■□□□□ -0
CLN3-240ENST00000631023 ZNF705FA8MVS1 300 aaPredicted RBP15.03■□□□□ -0
CLN3-240ENST00000631023 G3V3Q6 166 aa15.03■□□□□ -0
CLN3-240ENST00000631023 OR7C2O60412 319 aa15.03■□□□□ -0
CLN3-240ENST00000631023 NBEAP1P0C6P0 100 aa15.03■□□□□ -0
CLN3-240ENST00000631023 AMTNQ6UX39 209 aa15.03■□□□□ -0
CLN3-240ENST00000631023 OR10J6PQ8NGY7 276 aa15.03■□□□□ -0
CLN3-240ENST00000631023 PSMG3Q9BT73 122 aaPredicted RBP15.03■□□□□ -0
CLN3-240ENST00000631023 PRELID1Q9Y255 219 aa15.03■□□□□ -0
CLN3-240ENST00000631023 RFNGQ9Y644 331 aa15.03■□□□□ -0
CLN3-240ENST00000631023 A0A1W2PPV4 95 aa15.02■□□□□ -0
CLN3-240ENST00000631023 ARPC5O15511 151 aa15.02■□□□□ -0
CLN3-240ENST00000631023 KHDC3LQ587J8 217 aa15.02■□□□□ -0
CLN3-240ENST00000631023 RNF141Q8WVD5 230 aa15.02■□□□□ -0
CLN3-240ENST00000631023 AAMDCQ9H7C9 122 aa15.02■□□□□ -0
CLN3-240ENST00000631023 X6R8D5 127 aa15.02■□□□□ -0
CLN3-240ENST00000631023 SERF2P84101 59 aa15.02□□□□□ -0.01
CLN3-240ENST00000631023 ZNF705AQ6ZN79 300 aaPredicted RBP15.02□□□□□ -0.01
CLN3-240ENST00000631023 OR2G3Q8NGZ4 309 aa15.02□□□□□ -0.01
CLN3-240ENST00000631023 GOLT1BQ9Y3E0 138 aa15.02□□□□□ -0.01
CLN3-240ENST00000631023 TAAR5O14804 337 aa15.01□□□□□ -0.01
CLN3-240ENST00000631023 NDUFB4O95168 129 aa15.01□□□□□ -0.01
CLN3-240ENST00000631023 OR10J4P0C629 311 aa15.01□□□□□ -0.01
CLN3-240ENST00000631023 ATP6V0CP27449 155 aa15.01□□□□□ -0.01
CLN3-240ENST00000631023 Q8NAQ8 132 aa15.01□□□□□ -0.01
CLN3-240ENST00000631023 OR10G4Q8NGN3 311 aa15.01□□□□□ -0.01
CLN3-240ENST00000631023 OR10G9Q8NGN4 311 aa15.01□□□□□ -0.01
CLN3-240ENST00000631023 OR10G7Q8NGN6 311 aa15.01□□□□□ -0.01
CLN3-240ENST00000631023 FXYD5Q96DB9 178 aa15.01□□□□□ -0.01
CLN3-240ENST00000631023 GNPNAT1Q96EK6 184 aaPredicted RBP15.01□□□□□ -0.01
CLN3-240ENST00000631023 MRPL53Q96EL3 112 aaKnown RBP15.01□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 140.7 ms