RNA–Protein interactions for RNA: ENST00000598201.5

SHKBP1-216, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 2,069 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-216ENST00000598201 PRB4P10163 310 aaPredicted RBP13.21□□□□□ -0.29
SHKBP1-216ENST00000598201 NDUFA6P56556 154 aa13.21□□□□□ -0.29
SHKBP1-216ENST00000598201 UBE2G1P62253 170 aa13.21□□□□□ -0.29
SHKBP1-216ENST00000598201 TOMM20LQ6UXN7 152 aa13.21□□□□□ -0.29
SHKBP1-216ENST00000598201 SIGLEC15Q6ZMC9 328 aa13.21□□□□□ -0.29
SHKBP1-216ENST00000598201 RAB4BP61018 213 aa13.2□□□□□ -0.3
SHKBP1-216ENST00000598201 CYB5R2Q6BCY4 276 aa13.2□□□□□ -0.3
SHKBP1-216ENST00000598201 EEF1AKMT3Q96AZ1 226 aa13.2□□□□□ -0.3
SHKBP1-216ENST00000598201 ZFAND3Q9H8U3 227 aa13.2□□□□□ -0.3
SHKBP1-216ENST00000598201 RPL15P61313 204 aaKnown RBP13.2□□□□□ -0.3
SHKBP1-216ENST00000598201 DEFA6Q01524 100 aa13.2□□□□□ -0.3
SHKBP1-216ENST00000598201 IBA57Q5T440 356 aaKnown RBP13.2□□□□□ -0.3
SHKBP1-216ENST00000598201 GNB4Q9HAV0 340 aa13.2□□□□□ -0.3
SHKBP1-216ENST00000598201 RABAC1Q9UI14 185 aa13.2□□□□□ -0.3
SHKBP1-216ENST00000598201 IGHV4-59P01825 116 aa13.19□□□□□ -0.3
SHKBP1-216ENST00000598201 ATP5G2Q06055 141 aa13.19□□□□□ -0.3
SHKBP1-216ENST00000598201 S100A7AQ86SG5 101 aa13.19□□□□□ -0.3
SHKBP1-216ENST00000598201 PITPNC1Q9UKF7 332 aa13.19□□□□□ -0.3
SHKBP1-216ENST00000598201 RNF24Q9Y225 148 aa13.19□□□□□ -0.3
SHKBP1-216ENST00000598201 HIVEP1P15822 2718 aa13.19□□□□□ -0.3
SHKBP1-216ENST00000598201 TRAV8-1A0A0A6YYK1 113 aa13.19□□□□□ -0.3
SHKBP1-216ENST00000598201 TRBV7-1A0A0A6YYK4 115 aa13.19□□□□□ -0.3
SHKBP1-216ENST00000598201 M0QZK8 103 aa13.19□□□□□ -0.3
SHKBP1-216ENST00000598201 PPIFP30405 207 aaKnown RBP13.19□□□□□ -0.3
SHKBP1-216ENST00000598201 RPEL1Q2QD12 228 aa13.19□□□□□ -0.3
SHKBP1-216ENST00000598201 ACTL10Q5JWF8 245 aa13.19□□□□□ -0.3
SHKBP1-216ENST00000598201 BMPR1BO00238 502 aa13.18□□□□□ -0.3
SHKBP1-216ENST00000598201 TRGV3P03979 118 aa13.18□□□□□ -0.3
SHKBP1-216ENST00000598201 GOLT1AQ6ZVE7 132 aa13.18□□□□□ -0.3
SHKBP1-216ENST00000598201 Q71RC1 249 aaPredicted RBP13.18□□□□□ -0.3
SHKBP1-216ENST00000598201 CMTM2Q8TAZ6 248 aa13.18□□□□□ -0.3
SHKBP1-216ENST00000598201 FMC1Q96HJ9 113 aa13.18□□□□□ -0.3
SHKBP1-216ENST00000598201 GPR82Q96P67 336 aa13.18□□□□□ -0.3
SHKBP1-216ENST00000598201 SMR3AQ99954 134 aa13.18□□□□□ -0.3
SHKBP1-216ENST00000598201 MLST8Q9BVC4 326 aa13.18□□□□□ -0.3
SHKBP1-216ENST00000598201 CLPSL1A2RUU4 121 aa13.17□□□□□ -0.3
SHKBP1-216ENST00000598201 CA1P00915 261 aaPredicted RBP13.17□□□□□ -0.3
SHKBP1-216ENST00000598201 LTAP01374 205 aa13.17□□□□□ -0.3
SHKBP1-216ENST00000598201 IGLV2-11P01706 119 aa13.17□□□□□ -0.3
SHKBP1-216ENST00000598201 FRMD6-AS1P0C7T7 363 aa13.17□□□□□ -0.3
SHKBP1-216ENST00000598201 HOXA5P20719 270 aa13.17□□□□□ -0.3
SHKBP1-216ENST00000598201 PRR27Q6MZM9 219 aa13.17□□□□□ -0.3
SHKBP1-216ENST00000598201 OR8I2Q8N0Y5 310 aa13.17□□□□□ -0.3
SHKBP1-216ENST00000598201 SERTAD4Q9NUC0 356 aa13.17□□□□□ -0.3
SHKBP1-216ENST00000598201 GAR1Q9NY12 217 aaKnown RBP13.17□□□□□ -0.3
SHKBP1-216ENST00000598201 SMAD5-AS1Q9Y6J3 95 aa13.17□□□□□ -0.3
SHKBP1-216ENST00000598201 FAM223BA6NKX1 122 aa13.17□□□□□ -0.3
SHKBP1-216ENST00000598201 FSHBP01225 129 aa13.17□□□□□ -0.3
SHKBP1-216ENST00000598201 KRTAP1-1Q07627 177 aa13.17□□□□□ -0.3
SHKBP1-216ENST00000598201 FAM223AQ8IWN6 122 aa13.17□□□□□ -0.3
SHKBP1-216ENST00000598201 LYPD1Q8N2G4 141 aa13.17□□□□□ -0.3
SHKBP1-216ENST00000598201 ZNF705GA8MUZ8 300 aaPredicted RBP13.16□□□□□ -0.3
SHKBP1-216ENST00000598201 M0R3E3 92 aa13.16□□□□□ -0.3
SHKBP1-216ENST00000598201 TCL1AP56279 114 aa13.16□□□□□ -0.3
SHKBP1-216ENST00000598201 GFI1BQ5VTD9 330 aa13.16□□□□□ -0.3
SHKBP1-216ENST00000598201 LINC00322Q6ZN03 302 aaPredicted RBP13.16□□□□□ -0.3
SHKBP1-216ENST00000598201 NUDT10Q8NFP7 164 aa13.16□□□□□ -0.3
SHKBP1-216ENST00000598201 NUDT11Q96G61 164 aa13.16□□□□□ -0.3
SHKBP1-216ENST00000598201 BTF3L4Q96K17 158 aa13.16□□□□□ -0.3
SHKBP1-216ENST00000598201 IFITM10A6NMD0 228 aa13.16□□□□□ -0.3
SHKBP1-216ENST00000598201 CD5LO43866 347 aa13.16□□□□□ -0.3
SHKBP1-216ENST00000598201 RPL7P18124 248 aaKnown RBP13.16□□□□□ -0.3
SHKBP1-216ENST00000598201 IER3P46695 156 aa13.16□□□□□ -0.3
SHKBP1-216ENST00000598201 TPPP2P59282 170 aa13.16□□□□□ -0.3
SHKBP1-216ENST00000598201 PDE6HQ13956 83 aa13.16□□□□□ -0.3
SHKBP1-216ENST00000598201 LBHQ53QV2 105 aaPredicted RBP13.16□□□□□ -0.3
SHKBP1-216ENST00000598201 FAM231DQ6ZW35 169 aa13.16□□□□□ -0.3
SHKBP1-216ENST00000598201 Q86TA4 180 aa13.16□□□□□ -0.3
SHKBP1-216ENST00000598201 KLK15Q9H2R5 256 aa13.16□□□□□ -0.3
SHKBP1-216ENST00000598201 TRAV9-1A0A075B6T8 112 aa13.15□□□□□ -0.3
SHKBP1-216ENST00000598201 SMIM27A0A1W2PRY6 76 aa13.14□□□□□ -0.31
SHKBP1-216ENST00000598201 LY6G6DO95868 133 aa13.14□□□□□ -0.31
SHKBP1-216ENST00000598201 TRBV12-3P01733 135 aa13.14□□□□□ -0.31
SHKBP1-216ENST00000598201 TMEM95Q3KNT9 176 aa13.14□□□□□ -0.31
SHKBP1-216ENST00000598201 LCNL1Q6ZST4 164 aa13.14□□□□□ -0.31
SHKBP1-216ENST00000598201 SMIM12Q96EX1 92 aa13.14□□□□□ -0.31
SHKBP1-216ENST00000598201 TRAPPC1Q9Y5R8 145 aa13.14□□□□□ -0.31
SHKBP1-216ENST00000598201 IGHV3-66A0A0C4DH42 116 aa13.14□□□□□ -0.31
SHKBP1-216ENST00000598201 BUB3O43684 328 aa13.14□□□□□ -0.31
SHKBP1-216ENST00000598201 SPINK4O60575 86 aa13.14□□□□□ -0.31
SHKBP1-216ENST00000598201 APOHP02749 345 aaPredicted RBP13.14□□□□□ -0.31
SHKBP1-216ENST00000598201 SLC35B1P78383 322 aa13.14□□□□□ -0.31
SHKBP1-216ENST00000598201 PRNTQ86SH4 94 aa13.14□□□□□ -0.31
SHKBP1-216ENST00000598201 ASCL2Q99929 193 aa13.14□□□□□ -0.31
SHKBP1-216ENST00000598201 IGHV3OR16-13A0A075B7E8 117 aa13.13□□□□□ -0.31
SHKBP1-216ENST00000598201 IGHV3-74A0A0B4J1X5 117 aa13.13□□□□□ -0.31
SHKBP1-216ENST00000598201 DIRC3C9JPN6 131 aa13.13□□□□□ -0.31
SHKBP1-216ENST00000598201 ZNF207O43670 478 aaKnown RBP13.13□□□□□ -0.31
SHKBP1-216ENST00000598201 CBLN1P23435 193 aa13.13□□□□□ -0.31
SHKBP1-216ENST00000598201 CDX1P47902 265 aaPredicted RBP13.13□□□□□ -0.31
SHKBP1-216ENST00000598201 CBY1Q9Y3M2 126 aa13.13□□□□□ -0.31
SHKBP1-216ENST00000598201 F8P00451 2351 aa13.13□□□□□ -0.31
SHKBP1-216ENST00000598201 BRI3O95415 125 aa13.12□□□□□ -0.31
SHKBP1-216ENST00000598201 CFHR3Q02985 330 aa13.12□□□□□ -0.31
SHKBP1-216ENST00000598201 IGFL4Q6B9Z1 124 aa13.12□□□□□ -0.31
SHKBP1-216ENST00000598201 ATP6V0BQ99437 205 aa13.12□□□□□ -0.31
SHKBP1-216ENST00000598201 TLN2Q9Y4G6 2542 aa13.12□□□□□ -0.31
SHKBP1-216ENST00000598201 IGHV3-49A0A0A0MS15 119 aa13.12□□□□□ -0.31
SHKBP1-216ENST00000598201 A0A1B0GV90 55 aa13.12□□□□□ -0.31
SHKBP1-216ENST00000598201 H3BUA1 57 aa13.12□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 117.3 ms