RNA–Protein interactions for RNA: ENST00000565354.5

CLN3-217, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 759 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-217ENST00000565354 RPL7L1Q6DKI1 246 aaKnown RBP12.71□□□□□ -0.37
CLN3-217ENST00000565354 EBLN2Q6P2I7 272 aa12.71□□□□□ -0.37
CLN3-217ENST00000565354 MIR17HGQ75NE6 70 aa12.71□□□□□ -0.37
CLN3-217ENST00000565354 SLC50A1Q9BRV3 221 aa12.71□□□□□ -0.37
CLN3-217ENST00000565354 FUT9Q9Y231 359 aa12.71□□□□□ -0.37
CLN3-217ENST00000565354 PLECQ15149 4684 aaKnown RBP12.71□□□□□ -0.38
CLN3-217ENST00000565354 KIR2DL5BA0A0G2JN68 375 aa12.7□□□□□ -0.38
CLN3-217ENST00000565354 KIR2DL5BA0A0G2JPC4 375 aa12.7□□□□□ -0.38
CLN3-217ENST00000565354 A0A1W2PPV4 95 aa12.7□□□□□ -0.38
CLN3-217ENST00000565354 HMSDA8MTL9 139 aa12.7□□□□□ -0.38
CLN3-217ENST00000565354 UBE2CO00762 179 aa12.7□□□□□ -0.38
CLN3-217ENST00000565354 MRPS12O15235 138 aaKnown RBP12.7□□□□□ -0.38
CLN3-217ENST00000565354 ATP6V0CP27449 155 aa12.7□□□□□ -0.38
CLN3-217ENST00000565354 TAS2R45P59539 299 aa12.7□□□□□ -0.38
CLN3-217ENST00000565354 GUK1Q16774 197 aa12.7□□□□□ -0.38
CLN3-217ENST00000565354 SPATA31B1PQ5VZV4 182 aa12.7□□□□□ -0.38
CLN3-217ENST00000565354 IGFL4Q6B9Z1 124 aa12.7□□□□□ -0.38
CLN3-217ENST00000565354 KIR2DL5AQ8N109 375 aa12.7□□□□□ -0.38
CLN3-217ENST00000565354 KIR2DL5BQ8NHK3 375 aa12.7□□□□□ -0.38
CLN3-217ENST00000565354 PSMG3Q9BT73 122 aaPredicted RBP12.7□□□□□ -0.38
CLN3-217ENST00000565354 CSTL1Q9H114 145 aa12.7□□□□□ -0.38
CLN3-217ENST00000565354 RFNGQ9Y644 331 aa12.7□□□□□ -0.38
CLN3-217ENST00000565354 FRAS1Q86XX4 4008 aa12.7□□□□□ -0.38
CLN3-217ENST00000565354 H3BTX0 84 aa12.69□□□□□ -0.38
CLN3-217ENST00000565354 M6PRP20645 277 aa12.69□□□□□ -0.38
CLN3-217ENST00000565354 ZNF345Q14585 488 aa12.69□□□□□ -0.38
CLN3-217ENST00000565354 FOXI2Q6ZQN5 318 aa12.69□□□□□ -0.38
CLN3-217ENST00000565354 AKAP14Q86UN6 197 aa12.69□□□□□ -0.38
CLN3-217ENST00000565354 ZNF738Q8NE65 137 aa12.69□□□□□ -0.38
CLN3-217ENST00000565354 GNPNAT1Q96EK6 184 aaPredicted RBP12.69□□□□□ -0.38
CLN3-217ENST00000565354 ST6GAL2Q96JF0 529 aa12.69□□□□□ -0.38
CLN3-217ENST00000565354 ARPC5LQ9BPX5 153 aa12.69□□□□□ -0.38
CLN3-217ENST00000565354 HRH4Q9H3N8 390 aa12.69□□□□□ -0.38
CLN3-217ENST00000565354 TMEM14CQ9P0S9 112 aa12.69□□□□□ -0.38
CLN3-217ENST00000565354 A0A0D9SG52 128 aa12.68□□□□□ -0.38
CLN3-217ENST00000565354 KANTRA0A1W2PQU2 76 aa12.68□□□□□ -0.38
CLN3-217ENST00000565354 OR7C2O60412 319 aa12.68□□□□□ -0.38
CLN3-217ENST00000565354 MBP02144 154 aa12.68□□□□□ -0.38
CLN3-217ENST00000565354 IGLC2P0DOY2 106 aa12.68□□□□□ -0.38
CLN3-217ENST00000565354 PYYP10082 97 aa12.68□□□□□ -0.38
CLN3-217ENST00000565354 FAM122CQ6P4D5 195 aa12.68□□□□□ -0.38
CLN3-217ENST00000565354 TRPT1Q86TN4 253 aaKnown RBP12.68□□□□□ -0.38
CLN3-217ENST00000565354 TCTE3Q8IZS6 198 aa12.68□□□□□ -0.38
CLN3-217ENST00000565354 KCNRGQ8N5I3 272 aa12.68□□□□□ -0.38
CLN3-217ENST00000565354 RNF182Q8N6D2 247 aa12.68□□□□□ -0.38
CLN3-217ENST00000565354 OR11H4Q8NGC9 324 aa12.68□□□□□ -0.38
CLN3-217ENST00000565354 OR10G4Q8NGN3 311 aa12.68□□□□□ -0.38
CLN3-217ENST00000565354 OR10G9Q8NGN4 311 aa12.68□□□□□ -0.38
CLN3-217ENST00000565354 OR10G7Q8NGN6 311 aa12.68□□□□□ -0.38
CLN3-217ENST00000565354 C20orf173Q96LM9 149 aa12.68□□□□□ -0.38
CLN3-217ENST00000565354 C17orf77Q96MU5 243 aa12.68□□□□□ -0.38
CLN3-217ENST00000565354 PAXXQ9BUH6 204 aa12.68□□□□□ -0.38
CLN3-217ENST00000565354 SLC25A2Q9BXI2 301 aa12.68□□□□□ -0.38
CLN3-217ENST00000565354 OR51M1Q9H341 326 aa12.68□□□□□ -0.38
CLN3-217ENST00000565354 SAV1Q9H4B6 383 aaPredicted RBP12.68□□□□□ -0.38
CLN3-217ENST00000565354 RETNQ9HD89 108 aa12.68□□□□□ -0.38
CLN3-217ENST00000565354 TRAV8-2A0A0B4J237 113 aa12.67□□□□□ -0.38
CLN3-217ENST00000565354 PFDN1O60925 122 aa12.67□□□□□ -0.38
CLN3-217ENST00000565354 CA1P00915 261 aaPredicted RBP12.67□□□□□ -0.38
CLN3-217ENST00000565354 IGKV3-20P01619 116 aa12.67□□□□□ -0.38
CLN3-217ENST00000565354 HIST1H1EP10412 219 aaKnown RBP12.67□□□□□ -0.38
CLN3-217ENST00000565354 SPP1P10451 314 aa12.67□□□□□ -0.38
CLN3-217ENST00000565354 HLA-DRB4P13762 266 aa12.67□□□□□ -0.38
CLN3-217ENST00000565354 RAB2AP61019 212 aa12.67□□□□□ -0.38
CLN3-217ENST00000565354 NUTF2P61970 127 aaKnown RBP12.67□□□□□ -0.38
CLN3-217ENST00000565354 SERF2P84101 59 aa12.67□□□□□ -0.38
CLN3-217ENST00000565354 KHDC3LQ587J8 217 aa12.67□□□□□ -0.38
CLN3-217ENST00000565354 MORN3Q6PF18 240 aaPredicted RBP12.67□□□□□ -0.38
CLN3-217ENST00000565354 OR4B1Q8NGF8 309 aa12.67□□□□□ -0.38
CLN3-217ENST00000565354 OR2G3Q8NGZ4 309 aa12.67□□□□□ -0.38
CLN3-217ENST00000565354 BLNKQ8WV28 456 aa12.67□□□□□ -0.38
CLN3-217ENST00000565354 HLA-DRB4X5D2U9 266 aa12.67□□□□□ -0.38
CLN3-217ENST00000565354 H3BMM0 161 aa12.66□□□□□ -0.38
CLN3-217ENST00000565354 H3BQ15 152 aa12.66□□□□□ -0.38
CLN3-217ENST00000565354 DEFB1P60022 68 aa12.66□□□□□ -0.38
CLN3-217ENST00000565354 PSG3Q16557 428 aa12.66□□□□□ -0.38
CLN3-217ENST00000565354 DEFB135Q30KP9 77 aa12.66□□□□□ -0.38
CLN3-217ENST00000565354 Q6ZWC4 215 aa12.66□□□□□ -0.38
CLN3-217ENST00000565354 SH3BGRL3Q9H299 93 aa12.66□□□□□ -0.38
CLN3-217ENST00000565354 ZNF331Q9NQX6 463 aaPredicted RBP12.66□□□□□ -0.38
CLN3-217ENST00000565354 ZNF586Q9NXT0 402 aa12.66□□□□□ -0.38
CLN3-217ENST00000565354 CLEC5AQ9NY25 188 aa12.66□□□□□ -0.38
CLN3-217ENST00000565354 F6UB75 175 aa12.65□□□□□ -0.38
CLN3-217ENST00000565354 SLC17A3O00476 420 aa12.65□□□□□ -0.38
CLN3-217ENST00000565354 DUSP14O95147 198 aaKnown RBP12.65□□□□□ -0.38
CLN3-217ENST00000565354 HLA-DMBP28068 263 aa12.65□□□□□ -0.38
CLN3-217ENST00000565354 CDC34P49427 236 aaPredicted RBP12.65□□□□□ -0.38
CLN3-217ENST00000565354 PSG9Q00887 426 aa12.65□□□□□ -0.38
CLN3-217ENST00000565354 GDF5OSQ5U4N7 250 aa12.65□□□□□ -0.38
CLN3-217ENST00000565354 RNF141Q8WVD5 230 aa12.65□□□□□ -0.38
CLN3-217ENST00000565354 FAM167A-AS1Q96KT0 104 aa12.65□□□□□ -0.38
CLN3-217ENST00000565354 ZNF471Q9BX82 626 aaPredicted RBP12.65□□□□□ -0.38
CLN3-217ENST00000565354 TRBV19A0A075B6N1 114 aa12.64□□□□□ -0.39
CLN3-217ENST00000565354 A0A0J9YX75 114 aa12.64□□□□□ -0.39
CLN3-217ENST00000565354 BCL2L11O43521 198 aa12.64□□□□□ -0.39
CLN3-217ENST00000565354 SPRY2O43597 315 aa12.64□□□□□ -0.39
CLN3-217ENST00000565354 ZNF253O75346 499 aa12.64□□□□□ -0.39
CLN3-217ENST00000565354 OR10J4P0C629 311 aa12.64□□□□□ -0.39
CLN3-217ENST00000565354 UBE2L3P68036 154 aaKnown RBP12.64□□□□□ -0.39
CLN3-217ENST00000565354 PDE6HQ13956 83 aa12.64□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 103.6 ms