RNA–Protein interactions for RNA: ENST00000561258.1

VPS13C-210, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 3

Gene VPS13C, Length 614 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-210ENST00000561258 RNF122Q9H9V4 155 aa2.56□□□□□ -2
VPS13C-210ENST00000561258 GLTPQ9NZD2 209 aa2.56□□□□□ -2
VPS13C-210ENST00000561258 AK3Q9UIJ7 227 aa2.56□□□□□ -2
VPS13C-210ENST00000561258 FBXO5Q9UKT4 447 aa2.56□□□□□ -2
VPS13C-210ENST00000561258 ANGPT4Q9Y264 503 aa2.56□□□□□ -2
VPS13C-210ENST00000561258 STARD9Q9P2P6 4700 aa2.56□□□□□ -2
VPS13C-210ENST00000561258 DMBT1Q9UGM3 2413 aaPredicted RBP2.56□□□□□ -2
VPS13C-210ENST00000561258 A0A1W2PNM2 257 aa2.55□□□□□ -2
VPS13C-210ENST00000561258 GRIFINA4D1Z8 144 aa2.55□□□□□ -2
VPS13C-210ENST00000561258 UBE2L6O14933 153 aa2.55□□□□□ -2
VPS13C-210ENST00000561258 IGKV1-17P01599 117 aa2.55□□□□□ -2
VPS13C-210ENST00000561258 IGLV6-57P01721 117 aa2.55□□□□□ -2
VPS13C-210ENST00000561258 HIST1H1TP22492 207 aaPredicted RBP2.55□□□□□ -2
VPS13C-210ENST00000561258 PSME3P61289 254 aa2.55□□□□□ -2
VPS13C-210ENST00000561258 KRTAP5-7Q6L8G8 165 aa2.55□□□□□ -2
VPS13C-210ENST00000561258 SSX8Q7RTT4 187 aa2.55□□□□□ -2
VPS13C-210ENST00000561258 CMTM2Q8TAZ6 248 aa2.55□□□□□ -2
VPS13C-210ENST00000561258 SKA2Q8WVK7 121 aaPredicted RBP2.55□□□□□ -2
VPS13C-210ENST00000561258 CNBD2Q96M20 576 aa2.55□□□□□ -2
VPS13C-210ENST00000561258 SNRNP25Q9BV90 132 aaKnown RBP2.55□□□□□ -2
VPS13C-210ENST00000561258 FAM96AQ9H5X1 160 aa2.55□□□□□ -2
VPS13C-210ENST00000561258 PROK2Q9HC23 129 aa2.55□□□□□ -2
VPS13C-210ENST00000561258 CMTM6Q9NX76 183 aa2.55□□□□□ -2
VPS13C-210ENST00000561258 MRPL27Q9P0M9 148 aaKnown RBP2.55□□□□□ -2
VPS13C-210ENST00000561258 PKIGQ9Y2B9 76 aa2.55□□□□□ -2
VPS13C-210ENST00000561258 CHCHD2Q9Y6H1 151 aaPredicted RBP2.55□□□□□ -2
VPS13C-210ENST00000561258 IGKV1D-17A0A075B6S4 117 aa2.54□□□□□ -2
VPS13C-210ENST00000561258 IGKV3D-11A0A0A0MRZ8 115 aa2.54□□□□□ -2
VPS13C-210ENST00000561258 IGKV2-24A0A0C4DH68 120 aa2.54□□□□□ -2
VPS13C-210ENST00000561258 A0A1B0GW54 56 aa2.54□□□□□ -2
VPS13C-210ENST00000561258 PQLC2LA1A4F0 135 aa2.54□□□□□ -2
VPS13C-210ENST00000561258 LY6G6CO95867 125 aa2.54□□□□□ -2
VPS13C-210ENST00000561258 IGHV1-69P01742 117 aa2.54□□□□□ -2
VPS13C-210ENST00000561258 TTRP02766 147 aa2.54□□□□□ -2
VPS13C-210ENST00000561258 GABRA2P47869 451 aa2.54□□□□□ -2
VPS13C-210ENST00000561258 RBM11P57052 281 aaKnown RBP2.54□□□□□ -2
VPS13C-210ENST00000561258 ARF6P62330 175 aa2.54□□□□□ -2
VPS13C-210ENST00000561258 CAV1Q03135 178 aa2.54□□□□□ -2
VPS13C-210ENST00000561258 SPA17Q15506 151 aa2.54□□□□□ -2
VPS13C-210ENST00000561258 TMEM97Q5BJF2 176 aa2.54□□□□□ -2
VPS13C-210ENST00000561258 DCUN1D2Q6PH85 259 aa2.54□□□□□ -2
VPS13C-210ENST00000561258 C20orf196Q8IYI0 205 aa2.54□□□□□ -2
VPS13C-210ENST00000561258 MORN4Q8NDC4 146 aa2.54□□□□□ -2
VPS13C-210ENST00000561258 POP5Q969H6 163 aaKnown RBP2.54□□□□□ -2
VPS13C-210ENST00000561258 ISOC1Q96CN7 298 aa2.54□□□□□ -2
VPS13C-210ENST00000561258 TVP23CQ96ET8 276 aa2.54□□□□□ -2
VPS13C-210ENST00000561258 MCEEQ96PE7 176 aa2.54□□□□□ -2
VPS13C-210ENST00000561258 NMNAT3Q96T66 252 aa2.54□□□□□ -2
VPS13C-210ENST00000561258 TMEM222Q9H0R3 208 aa2.54□□□□□ -2
VPS13C-210ENST00000561258 DCSTAMPQ9H295 470 aa2.54□□□□□ -2
VPS13C-210ENST00000561258 MRPL16Q9NX20 251 aaKnown RBP2.54□□□□□ -2
VPS13C-210ENST00000561258 PRELID1Q9Y255 219 aa2.54□□□□□ -2
VPS13C-210ENST00000561258 PRELID3BQ9Y3B1 194 aa2.54□□□□□ -2
VPS13C-210ENST00000561258 MMACHCQ9Y4U1 282 aa2.54□□□□□ -2
VPS13C-210ENST00000561258 HSPE1-MOB4S4R3N1 261 aa2.54□□□□□ -2
VPS13C-210ENST00000561258 ARFGEF3Q5TH69 2177 aa2.54□□□□□ -2
VPS13C-210ENST00000561258 SRRM2Q9UQ35 2752 aaKnown RBP2.54□□□□□ -2
VPS13C-210ENST00000561258 IGLV10-54A0A075B6I4 117 aa2.53□□□□□ -2
VPS13C-210ENST00000561258 IGHV3-15A0A0B4J1V0 119 aa2.53□□□□□ -2
VPS13C-210ENST00000561258 SIGLEC16A6NMB1 481 aa2.53□□□□□ -2
VPS13C-210ENST00000561258 LYNX1G3V0Z9 82 aa2.53□□□□□ -2
VPS13C-210ENST00000561258 PLA2G10O15496 165 aa2.53□□□□□ -2
VPS13C-210ENST00000561258 LYNX1P0DP58 116 aa2.53□□□□□ -2
VPS13C-210ENST00000561258 RWDD2BP57060 319 aa2.53□□□□□ -2
VPS13C-210ENST00000561258 RELAQ04206 551 aa2.53□□□□□ -2
VPS13C-210ENST00000561258 TMED2Q15363 201 aa2.53□□□□□ -2
VPS13C-210ENST00000561258 OR6V1Q8N148 313 aa2.53□□□□□ -2
VPS13C-210ENST00000561258 DYNLRB1Q9NP97 96 aa2.53□□□□□ -2
VPS13C-210ENST00000561258 PRTFDC1Q9NRG1 225 aa2.53□□□□□ -2
VPS13C-210ENST00000561258 ZNF391Q9UJN7 358 aa2.53□□□□□ -2
VPS13C-210ENST00000561258 ARL5AQ9Y689 179 aa2.53□□□□□ -2
VPS13C-210ENST00000561258 HEATR5BQ9P2D3 2071 aa2.53□□□□□ -2.01
VPS13C-210ENST00000561258 MDFIC2A0A1B0GVS7 189 aa2.52□□□□□ -2.01
VPS13C-210ENST00000561258 MFSD11O43934 449 aa2.52□□□□□ -2.01
VPS13C-210ENST00000561258 LYZL6O75951 148 aa2.52□□□□□ -2.01
VPS13C-210ENST00000561258 CNIH1O95406 144 aa2.52□□□□□ -2.01
VPS13C-210ENST00000561258 SERPINA1P01009 418 aa2.52□□□□□ -2.01
VPS13C-210ENST00000561258 GZMBP10144 247 aa2.52□□□□□ -2.01
VPS13C-210ENST00000561258 CD200P41217 278 aa2.52□□□□□ -2.01
VPS13C-210ENST00000561258 RPL27AP46776 148 aaKnown RBP2.52□□□□□ -2.01
VPS13C-210ENST00000561258 TAS2R30P59541 319 aa2.52□□□□□ -2.01
VPS13C-210ENST00000561258 PSG4Q00888 419 aa2.52□□□□□ -2.01
VPS13C-210ENST00000561258 RUNX1Q01196 453 aa2.52□□□□□ -2.01
VPS13C-210ENST00000561258 GUK1Q16774 197 aa2.52□□□□□ -2.01
VPS13C-210ENST00000561258 LPCAT3Q6P1A2 487 aa2.52□□□□□ -2.01
VPS13C-210ENST00000561258 C2orf91Q6ZV80 131 aa2.52□□□□□ -2.01
VPS13C-210ENST00000561258 ROPN1LQ96C74 230 aa2.52□□□□□ -2.01
VPS13C-210ENST00000561258 AICDAQ9GZX7 198 aa2.52□□□□□ -2.01
VPS13C-210ENST00000561258 HEATR1Q9H583 2144 aaKnown RBP2.52□□□□□ -2.01
VPS13C-210ENST00000561258 TXNL4BQ9NX01 149 aaKnown RBP2.52□□□□□ -2.01
VPS13C-210ENST00000561258 MCTS1Q9ULC4 181 aaKnown RBP2.52□□□□□ -2.01
VPS13C-210ENST00000561258 ARL2BPQ9Y2Y0 163 aa2.52□□□□□ -2.01
VPS13C-210ENST00000561258 ARHGAP32A7KAX9 2087 aa2.52□□□□□ -2.01
VPS13C-210ENST00000561258 KNCNA6PVL3 124 aa2.51□□□□□ -2.01
VPS13C-210ENST00000561258 ATP6V1G2-DDX39BF2Z307 99 aa2.51□□□□□ -2.01
VPS13C-210ENST00000561258 G3V3Q6 166 aa2.51□□□□□ -2.01
VPS13C-210ENST00000561258 H3BPC8 53 aa2.51□□□□□ -2.01
VPS13C-210ENST00000561258 P0C880 135 aa2.51□□□□□ -2.01
VPS13C-210ENST00000561258 CPMP14384 443 aa2.51□□□□□ -2.01
VPS13C-210ENST00000561258 PPP1R2P41236 205 aa2.51□□□□□ -2.01
Retrieved 100 of 20,778 RNA–protein pairs in 48.1 ms