RNA–Protein interactions for RNA: ENST00000547825.5

LIMA1-203, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-203ENST00000547825 FOXC2Q99958 501 aa4.45□□□□□ -1.7
LIMA1-203ENST00000547825 ZNF257Q9Y2Q1 563 aa4.45□□□□□ -1.7
LIMA1-203ENST00000547825 PKD1L2Q7Z442 2459 aa4.45□□□□□ -1.7
LIMA1-203ENST00000547825 SAA2-SAA4A0A096LPE2 208 aa4.44□□□□□ -1.7
LIMA1-203ENST00000547825 IGHV2OR16-5A0A0B4J2B6 119 aa4.44□□□□□ -1.7
LIMA1-203ENST00000547825 NDUFA3O95167 84 aa4.44□□□□□ -1.7
LIMA1-203ENST00000547825 SAA2P0DJI9 122 aaPredicted RBP4.44□□□□□ -1.7
LIMA1-203ENST00000547825 EVI2AP22794 236 aa4.44□□□□□ -1.7
LIMA1-203ENST00000547825 MORN2Q502X0 79 aa4.44□□□□□ -1.7
LIMA1-203ENST00000547825 TIMM23BQ5SRD1 257 aa4.44□□□□□ -1.7
LIMA1-203ENST00000547825 TMEM42Q69YG0 159 aa4.44□□□□□ -1.7
LIMA1-203ENST00000547825 RBPMS2Q6ZRY4 209 aaKnown RBP4.44□□□□□ -1.7
LIMA1-203ENST00000547825 EXOC3-AS1Q8N2X6 119 aa4.44□□□□□ -1.7
LIMA1-203ENST00000547825 ZADH2Q8N4Q0 377 aa4.44□□□□□ -1.7
LIMA1-203ENST00000547825 FGF23Q9GZV9 251 aaPredicted RBP4.44□□□□□ -1.7
LIMA1-203ENST00000547825 NACAE9PAV3 2078 aa4.44□□□□□ -1.7
LIMA1-203ENST00000547825 TRBV20OR9-2A0A075B6H5 130 aa4.44□□□□□ -1.7
LIMA1-203ENST00000547825 KIR2DL5BA0A0G2JN68 375 aa4.44□□□□□ -1.7
LIMA1-203ENST00000547825 KIR2DL5BA0A0G2JPC4 375 aa4.44□□□□□ -1.7
LIMA1-203ENST00000547825 MBD3L5A6NJ08 208 aaPredicted RBP4.44□□□□□ -1.7
LIMA1-203ENST00000547825 M0R3E3 92 aa4.44□□□□□ -1.7
LIMA1-203ENST00000547825 IL4P05112 153 aa4.44□□□□□ -1.7
LIMA1-203ENST00000547825 KIR2DL5AQ8N109 375 aa4.44□□□□□ -1.7
LIMA1-203ENST00000547825 PNKDQ8N490 385 aa4.44□□□□□ -1.7
LIMA1-203ENST00000547825 SIGMAR1Q99720 223 aa4.44□□□□□ -1.7
LIMA1-203ENST00000547825 JPT1Q9UK76 154 aa4.44□□□□□ -1.7
LIMA1-203ENST00000547825 CECR9P0C854 216 aa4.44□□□□□ -1.7
LIMA1-203ENST00000547825 SAA1P0DJI8 122 aaPredicted RBP4.44□□□□□ -1.7
LIMA1-203ENST00000547825 SMIM17P0DL12 118 aa4.44□□□□□ -1.7
LIMA1-203ENST00000547825 HIST1H1AQ02539 215 aaPredicted RBP4.44□□□□□ -1.7
LIMA1-203ENST00000547825 ZNF146Q15072 292 aa4.44□□□□□ -1.7
LIMA1-203ENST00000547825 TEX43Q6ZNM6 134 aa4.44□□□□□ -1.7
LIMA1-203ENST00000547825 C5orf30Q96GV9 206 aa4.44□□□□□ -1.7
LIMA1-203ENST00000547825 ZNF714Q96N38 554 aa4.44□□□□□ -1.7
LIMA1-203ENST00000547825 Q9H3A6 140 aa4.44□□□□□ -1.7
LIMA1-203ENST00000547825 ST20Q9HBF5 79 aa4.44□□□□□ -1.7
LIMA1-203ENST00000547825 MRPL16Q9NX20 251 aaKnown RBP4.44□□□□□ -1.7
LIMA1-203ENST00000547825 EPDR1Q9UM22 224 aa4.44□□□□□ -1.7
LIMA1-203ENST00000547825 HCFC1P51610 2035 aa4.43□□□□□ -1.7
LIMA1-203ENST00000547825 TEX22C9J3V5 150 aa4.43□□□□□ -1.7
LIMA1-203ENST00000547825 SMKR1H3BMG3 65 aa4.43□□□□□ -1.7
LIMA1-203ENST00000547825 K7EN84 100 aa4.43□□□□□ -1.7
LIMA1-203ENST00000547825 ITGB1BP1O14713 200 aa4.43□□□□□ -1.7
LIMA1-203ENST00000547825 GAGE1Q13065 139 aa4.43□□□□□ -1.7
LIMA1-203ENST00000547825 LINC00173Q6ZV60 143 aa4.43□□□□□ -1.7
LIMA1-203ENST00000547825 TEX45Q8NA69 505 aa4.43□□□□□ -1.7
LIMA1-203ENST00000547825 SRSF8Q9BRL6 282 aaKnown RBP4.43□□□□□ -1.7
LIMA1-203ENST00000547825 MRPL20Q9BYC9 149 aaKnown RBP4.43□□□□□ -1.7
LIMA1-203ENST00000547825 RAI1Q7Z5J4 1906 aaPredicted RBP4.43□□□□□ -1.7
LIMA1-203ENST00000547825 TRAV9-1A0A075B6T8 112 aa4.43□□□□□ -1.7
LIMA1-203ENST00000547825 PAX1P15863 534 aa4.43□□□□□ -1.7
LIMA1-203ENST00000547825 YPEL3P61236 119 aaPredicted RBP4.43□□□□□ -1.7
LIMA1-203ENST00000547825 Q0VG73 95 aa4.43□□□□□ -1.7
LIMA1-203ENST00000547825 COA6Q5JTJ3 125 aaKnown RBP4.43□□□□□ -1.7
LIMA1-203ENST00000547825 PET117Q6UWS5 81 aa4.43□□□□□ -1.7
LIMA1-203ENST00000547825 WDR82Q6UXN9 313 aa4.43□□□□□ -1.7
LIMA1-203ENST00000547825 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa4.43□□□□□ -1.7
LIMA1-203ENST00000547825 GTSCR1Q86UQ5 136 aa4.43□□□□□ -1.7
LIMA1-203ENST00000547825 GGNQ86UU5 652 aa4.43□□□□□ -1.7
LIMA1-203ENST00000547825 FBXL15Q9H469 300 aa4.43□□□□□ -1.7
LIMA1-203ENST00000547825 MAP1LC3AQ9H492 121 aa4.43□□□□□ -1.7
LIMA1-203ENST00000547825 CEP295Q9C0D2 2601 aa4.43□□□□□ -1.7
LIMA1-203ENST00000547825 NAV3Q8IVL0 2385 aa4.43□□□□□ -1.7
LIMA1-203ENST00000547825 C15orf61A6NNL5 157 aa4.43□□□□□ -1.7
LIMA1-203ENST00000547825 K7EMI3 77 aa4.43□□□□□ -1.7
LIMA1-203ENST00000547825 NDUFS8O00217 210 aa4.43□□□□□ -1.7
LIMA1-203ENST00000547825 AREGP15514 252 aa4.43□□□□□ -1.7
LIMA1-203ENST00000547825 PSG3Q16557 428 aa4.43□□□□□ -1.7
LIMA1-203ENST00000547825 ETDBQ3ZM63 59 aa4.43□□□□□ -1.7
LIMA1-203ENST00000547825 COQ2Q96H96 371 aa4.43□□□□□ -1.7
LIMA1-203ENST00000547825 MRPS16Q9Y3D3 137 aaKnown RBP4.43□□□□□ -1.7
LIMA1-203ENST00000547825 GCN1Q92616 2671 aaKnown RBP4.43□□□□□ -1.7
LIMA1-203ENST00000547825 TRAV17A0A0B4J275 112 aa4.42□□□□□ -1.7
LIMA1-203ENST00000547825 GGTLC3B5MD39 225 aa4.42□□□□□ -1.7
LIMA1-203ENST00000547825 NPIPB11E5RHQ5 1161 aa4.42□□□□□ -1.7
LIMA1-203ENST00000547825 PRRG2O14669 202 aa4.42□□□□□ -1.7
LIMA1-203ENST00000547825 IGKV1-16P04430 117 aa4.42□□□□□ -1.7
LIMA1-203ENST00000547825 ECSCRQ19T08 205 aa4.42□□□□□ -1.7
LIMA1-203ENST00000547825 Q6P435 159 aa4.42□□□□□ -1.7
LIMA1-203ENST00000547825 FER1L6-AS1Q8NA97 138 aa4.42□□□□□ -1.7
LIMA1-203ENST00000547825 RNF138Q8WVD3 245 aa4.42□□□□□ -1.7
LIMA1-203ENST00000547825 PYGO2Q9BRQ0 406 aa4.42□□□□□ -1.7
LIMA1-203ENST00000547825 NGBQ9NPG2 151 aa4.42□□□□□ -1.7
LIMA1-203ENST00000547825 ZNF71Q9NQZ8 489 aaPredicted RBP4.42□□□□□ -1.7
LIMA1-203ENST00000547825 IDI2-AS1Q9NZ38 188 aa4.42□□□□□ -1.7
LIMA1-203ENST00000547825 FOXA2Q9Y261 457 aaPredicted RBP4.42□□□□□ -1.7
LIMA1-203ENST00000547825 V9GYV3 84 aa4.42□□□□□ -1.7
LIMA1-203ENST00000547825 CUBNO60494 3623 aa4.42□□□□□ -1.7
LIMA1-203ENST00000547825 LOC105371242A0A075B767 164 aa4.42□□□□□ -1.7
LIMA1-203ENST00000547825 PPIAL4CA0A0B4J2A2 164 aa4.42□□□□□ -1.7
LIMA1-203ENST00000547825 PPIAL4GP0DN37 164 aa4.42□□□□□ -1.7
LIMA1-203ENST00000547825 ZFP36P26651 326 aaKnown RBP4.42□□□□□ -1.7
LIMA1-203ENST00000547825 RPL13AP40429 203 aaKnown RBP4.42□□□□□ -1.7
LIMA1-203ENST00000547825 DLX1P56177 255 aa4.42□□□□□ -1.7
LIMA1-203ENST00000547825 LINC00310P59036 64 aa4.42□□□□□ -1.7
LIMA1-203ENST00000547825 IGFL4Q6B9Z1 124 aa4.42□□□□□ -1.7
LIMA1-203ENST00000547825 EBLN2Q6P2I7 272 aa4.42□□□□□ -1.7
LIMA1-203ENST00000547825 TTC9CQ8N5M4 171 aa4.42□□□□□ -1.7
LIMA1-203ENST00000547825 OR4C13Q8NGP0 309 aa4.42□□□□□ -1.7
LIMA1-203ENST00000547825 SFXN3Q9BWM7 321 aa4.42□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 58.9 ms