RNA–Protein interactions for RNA: ENST00000544669.5

CPSF7-223, Transcript of cleavage and polyadenylation specific factor 7, human

TSL 5

Gene CPSF7, Length 1,800 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPSF7-223	ENST00000544669	LHFPL4	Q7Z7J7	247 aa		10.23	□□□□□ -0.77
CPSF7-223	ENST00000544669	FAM110D	Q8TAY7	271 aa	Predicted RBP	10.23	□□□□□ -0.77
CPSF7-223	ENST00000544669	DPF1	Q92782	380 aa		10.23	□□□□□ -0.77
CPSF7-223	ENST00000544669	RBAKDN	A6NC62	111 aa		10.22	□□□□□ -0.77
CPSF7-223	ENST00000544669	PPBP	P02775	128 aa		10.22	□□□□□ -0.77
CPSF7-223	ENST00000544669	IGLL1	P15814	213 aa		10.22	□□□□□ -0.77
CPSF7-223	ENST00000544669	LDLRAD2	Q5SZI1	272 aa		10.22	□□□□□ -0.77
CPSF7-223	ENST00000544669	LCN12	Q6JVE5	192 aa		10.22	□□□□□ -0.77
CPSF7-223	ENST00000544669	C12orf54	Q6X4T0	127 aa		10.22	□□□□□ -0.77
CPSF7-223	ENST00000544669	SLC50A1	Q9BRV3	221 aa		10.22	□□□□□ -0.77
CPSF7-223	ENST00000544669	PPP1R14D	Q9NXH3	145 aa		10.22	□□□□□ -0.77
CPSF7-223	ENST00000544669		U3KQK5	164 aa		10.22	□□□□□ -0.77
CPSF7-223	ENST00000544669	CNOT1	A5YKK6	2376 aa	Known RBP	10.22	□□□□□ -0.77
CPSF7-223	ENST00000544669		A0A087X0K7	114 aa		10.21	□□□□□ -0.77
CPSF7-223	ENST00000544669	ARMS2	P0C7Q2	107 aa		10.21	□□□□□ -0.77
CPSF7-223	ENST00000544669	REL	Q04864	619 aa	Predicted RBP	10.21	□□□□□ -0.77
CPSF7-223	ENST00000544669	FAM120AOS	Q5T036	256 aa		10.21	□□□□□ -0.77
CPSF7-223	ENST00000544669	ARFGEF3	Q5TH69	2177 aa		10.21	□□□□□ -0.77
CPSF7-223	ENST00000544669	ASPHD1	Q5U4P2	390 aa		10.21	□□□□□ -0.77
CPSF7-223	ENST00000544669	SLC25A34	Q6PIV7	304 aa		10.21	□□□□□ -0.77
CPSF7-223	ENST00000544669	ORMDL3	Q8N138	153 aa		10.21	□□□□□ -0.77
CPSF7-223	ENST00000544669	PRR25	Q96S07	402 aa		10.21	□□□□□ -0.77
CPSF7-223	ENST00000544669	NPFFR1	Q9GZQ6	430 aa		10.21	□□□□□ -0.77
CPSF7-223	ENST00000544669	HIF1AN	Q9NWT6	349 aa		10.21	□□□□□ -0.77
CPSF7-223	ENST00000544669	WDFY4	Q6ZS81	3184 aa		10.21	□□□□□ -0.77
CPSF7-223	ENST00000544669	CTSG	P08311	255 aa		10.21	□□□□□ -0.78
CPSF7-223	ENST00000544669	FAM104B	Q5XKR9	115 aa		10.21	□□□□□ -0.78
CPSF7-223	ENST00000544669	ZNF738	Q8NE65	137 aa		10.21	□□□□□ -0.78
CPSF7-223	ENST00000544669	C17orf77	Q96MU5	243 aa		10.21	□□□□□ -0.78
CPSF7-223	ENST00000544669	ZGRF1	Q86YA3	2104 aa		10.2	□□□□□ -0.78
CPSF7-223	ENST00000544669	GRN	P28799	593 aa	Known RBP	10.2	□□□□□ -0.78
CPSF7-223	ENST00000544669	EFNA4	P52798	201 aa		10.2	□□□□□ -0.78
CPSF7-223	ENST00000544669	PRB3	Q04118	309 aa	Predicted RBP	10.2	□□□□□ -0.78
CPSF7-223	ENST00000544669	LINC01545	Q5VT33	79 aa		10.2	□□□□□ -0.78
CPSF7-223	ENST00000544669	MRPL53	Q96EL3	112 aa	Known RBP	10.2	□□□□□ -0.78
CPSF7-223	ENST00000544669	SIRPD	Q9H106	197 aa		10.2	□□□□□ -0.78
CPSF7-223	ENST00000544669	MUC3A	Q02505	3323 aa		10.2	□□□□□ -0.78
CPSF7-223	ENST00000544669	FABP5P3	A8MUU1	101 aa		10.19	□□□□□ -0.78
CPSF7-223	ENST00000544669	SH2D1A	O60880	128 aa		10.19	□□□□□ -0.78
CPSF7-223	ENST00000544669	CRIP1	P50238	77 aa		10.19	□□□□□ -0.78
CPSF7-223	ENST00000544669	KLRD1	Q13241	179 aa		10.19	□□□□□ -0.78
CPSF7-223	ENST00000544669	ATOH7	Q8N100	152 aa		10.19	□□□□□ -0.78
CPSF7-223	ENST00000544669	ASCL2	Q99929	193 aa		10.19	□□□□□ -0.78
CPSF7-223	ENST00000544669	TMUB1	Q9BVT8	246 aa		10.19	□□□□□ -0.78
CPSF7-223	ENST00000544669	TRBV7-1	A0A0A6YYK4	115 aa		10.19	□□□□□ -0.78
CPSF7-223	ENST00000544669	IGHV7-81	A0A0B4J1V7	117 aa		10.19	□□□□□ -0.78
CPSF7-223	ENST00000544669	IGHV2-70D	A0A0C4DH43	119 aa		10.19	□□□□□ -0.78
CPSF7-223	ENST00000544669	ZNF785	A8K8V0	405 aa		10.19	□□□□□ -0.78
CPSF7-223	ENST00000544669		F8W735	103 aa	Predicted RBP	10.19	□□□□□ -0.78
CPSF7-223	ENST00000544669	KLF17	Q5JT82	389 aa	Predicted RBP	10.19	□□□□□ -0.78
CPSF7-223	ENST00000544669	FRY	Q5TBA9	3013 aa		10.19	□□□□□ -0.78
CPSF7-223	ENST00000544669	CELSR3	Q9NYQ7	3312 aa		10.18	□□□□□ -0.78
CPSF7-223	ENST00000544669		A0A1W2PRD5	423 aa		10.18	□□□□□ -0.78
CPSF7-223	ENST00000544669		A0A1W2PRF3	423 aa		10.18	□□□□□ -0.78
CPSF7-223	ENST00000544669		A0A1W2PRM7	423 aa		10.18	□□□□□ -0.78
CPSF7-223	ENST00000544669		M0R3E3	92 aa		10.18	□□□□□ -0.78
CPSF7-223	ENST00000544669	OVOL3	O00110	214 aa		10.18	□□□□□ -0.78
CPSF7-223	ENST00000544669	LYZL1	Q6UWQ5	148 aa		10.18	□□□□□ -0.78
CPSF7-223	ENST00000544669		Q8N9W7	124 aa		10.18	□□□□□ -0.78
CPSF7-223	ENST00000544669	FER1L6-AS1	Q8NA97	138 aa		10.18	□□□□□ -0.78
CPSF7-223	ENST00000544669	OR1N2	Q8NGR9	330 aa		10.18	□□□□□ -0.78
CPSF7-223	ENST00000544669	ZNF502	Q8TBZ5	544 aa		10.18	□□□□□ -0.78
CPSF7-223	ENST00000544669	EEF1AKMT3	Q96AZ1	226 aa		10.18	□□□□□ -0.78
CPSF7-223	ENST00000544669	PRELID3A	Q96N28	172 aa		10.18	□□□□□ -0.78
CPSF7-223	ENST00000544669	ZNF747	Q9BV97	191 aa		10.18	□□□□□ -0.78
CPSF7-223	ENST00000544669	MALRD1	Q5VYJ5	2156 aa		10.18	□□□□□ -0.78
CPSF7-223	ENST00000544669	OR2T8	A6NH00	312 aa		10.17	□□□□□ -0.78
CPSF7-223	ENST00000544669	UNQ5815/PRO19632	Q6UWF5	114 aa		10.17	□□□□□ -0.78
CPSF7-223	ENST00000544669	STPG4	Q8N801	248 aa		10.17	□□□□□ -0.78
CPSF7-223	ENST00000544669	TPPP3	Q9BW30	176 aa		10.17	□□□□□ -0.78
CPSF7-223	ENST00000544669	TTC28	Q96AY4	2481 aa		10.17	□□□□□ -0.78
CPSF7-223	ENST00000544669	CNFN	Q9BYD5	112 aa		10.17	□□□□□ -0.78
CPSF7-223	ENST00000544669	NAV3	Q8IVL0	2385 aa		10.16	□□□□□ -0.78
CPSF7-223	ENST00000544669	EGR2	P11161	476 aa	Predicted RBP	10.16	□□□□□ -0.78
CPSF7-223	ENST00000544669	CD24	P25063	80 aa		10.16	□□□□□ -0.78
CPSF7-223	ENST00000544669	HINT1	P49773	126 aa	Predicted RBP	10.16	□□□□□ -0.78
CPSF7-223	ENST00000544669	HIST1H1A	Q02539	215 aa	Predicted RBP	10.16	□□□□□ -0.78
CPSF7-223	ENST00000544669	LGALS9B	Q3B8N2	356 aa		10.16	□□□□□ -0.78
CPSF7-223	ENST00000544669	LGALS9C	Q6DKI2	356 aa		10.16	□□□□□ -0.78
CPSF7-223	ENST00000544669	C8orf49	Q96NF6	230 aa		10.16	□□□□□ -0.78
CPSF7-223	ENST00000544669	COX11	Q9Y6N1	276 aa		10.16	□□□□□ -0.78
CPSF7-223	ENST00000544669	BUB3	O43684	328 aa		10.15	□□□□□ -0.78
CPSF7-223	ENST00000544669	LY6H	O94772	140 aa		10.15	□□□□□ -0.78
CPSF7-223	ENST00000544669	HBD	P02042	147 aa		10.15	□□□□□ -0.78
CPSF7-223	ENST00000544669	CSN3	P07498	182 aa		10.15	□□□□□ -0.78
CPSF7-223	ENST00000544669	IGLC6	P0CF74	106 aa		10.15	□□□□□ -0.78
CPSF7-223	ENST00000544669	CKS2	P33552	79 aa		10.15	□□□□□ -0.78
CPSF7-223	ENST00000544669	NDP	Q00604	133 aa		10.15	□□□□□ -0.78
CPSF7-223	ENST00000544669	C15orf32	Q32M92	178 aa		10.15	□□□□□ -0.78
CPSF7-223	ENST00000544669	SMIM15	Q7Z3B0	74 aa		10.15	□□□□□ -0.78
CPSF7-223	ENST00000544669	METTL26	Q96S19	204 aa		10.15	□□□□□ -0.78
CPSF7-223	ENST00000544669	SCRT2	Q9NQ03	307 aa		10.15	□□□□□ -0.78
CPSF7-223	ENST00000544669	RAX	Q9Y2V3	346 aa		10.15	□□□□□ -0.78
CPSF7-223	ENST00000544669		D6R8Y8	96 aa		10.14	□□□□□ -0.79
CPSF7-223	ENST00000544669	TWIST1	Q15672	202 aa		10.14	□□□□□ -0.79
CPSF7-223	ENST00000544669	MAJIN	Q3KP22	176 aa		10.14	□□□□□ -0.79
CPSF7-223	ENST00000544669	NXT2	Q9NPJ8	142 aa	Known RBP	10.14	□□□□□ -0.79
CPSF7-223	ENST00000544669	PRRC2C	Q9Y520	2896 aa	Known RBP	10.14	□□□□□ -0.79
CPSF7-223	ENST00000544669	RP1L1	Q8IWN7	2480 aa	Predicted RBP	10.14	□□□□□ -0.79
CPSF7-223	ENST00000544669	FAM223B	A6NKX1	122 aa		10.14	□□□□□ -0.79

Retrieved 100 of 20,778 RNA–protein pairs in 51.8 ms