RNA–Protein interactions for RNA: ENST00000533222.5

CD44-236, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 581 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-236ENST00000533222 K7EM74 188 aa4.28□□□□□ -1.72
CD44-236ENST00000533222 NPPCP23582 126 aa4.28□□□□□ -1.72
CD44-236ENST00000533222 FKBP2P26885 142 aaKnown RBP4.28□□□□□ -1.72
CD44-236ENST00000533222 SSR2P43308 183 aa4.28□□□□□ -1.72
CD44-236ENST00000533222 FXYD2P54710 66 aa4.28□□□□□ -1.72
CD44-236ENST00000533222 LINC00205P59089 165 aa4.28□□□□□ -1.72
CD44-236ENST00000533222 UBE2L3P68036 154 aaKnown RBP4.28□□□□□ -1.72
CD44-236ENST00000533222 RPL18AQ02543 176 aaKnown RBP4.28□□□□□ -1.72
CD44-236ENST00000533222 ARFRP1Q13795 201 aa4.28□□□□□ -1.72
CD44-236ENST00000533222 C1orf140Q5VVS0 124 aa4.28□□□□□ -1.72
CD44-236ENST00000533222 LCN10Q6JVE6 187 aa4.28□□□□□ -1.72
CD44-236ENST00000533222 Q6ZSV7 163 aa4.28□□□□□ -1.72
CD44-236ENST00000533222 RPP25LQ8N5L8 163 aaKnown RBP4.28□□□□□ -1.72
CD44-236ENST00000533222 SERP2Q8N6R1 65 aa4.28□□□□□ -1.72
CD44-236ENST00000533222 ZNF525Q8N782 197 aa4.28□□□□□ -1.72
CD44-236ENST00000533222 NEXN-AS1Q8NBZ9 246 aa4.28□□□□□ -1.72
CD44-236ENST00000533222 FMC1Q96HJ9 113 aa4.28□□□□□ -1.72
CD44-236ENST00000533222 GFRA4Q9GZZ7 299 aa4.28□□□□□ -1.72
CD44-236ENST00000533222 C16orf95Q9H693 158 aa4.28□□□□□ -1.72
CD44-236ENST00000533222 OCIAD1Q9NX40 245 aa4.28□□□□□ -1.72
CD44-236ENST00000533222 MDC1Q14676 2089 aaKnown RBP4.28□□□□□ -1.72
CD44-236ENST00000533222 PTPRBP23467 1997 aa4.27□□□□□ -1.73
CD44-236ENST00000533222 GTF3C1Q12789 2109 aa4.27□□□□□ -1.73
CD44-236ENST00000533222 NCOA6Q14686 2063 aaPredicted RBP4.27□□□□□ -1.73
CD44-236ENST00000533222 LILRA5A6NI73 299 aa4.27□□□□□ -1.73
CD44-236ENST00000533222 LYZL6O75951 148 aa4.27□□□□□ -1.73
CD44-236ENST00000533222 OXTP01178 125 aa4.27□□□□□ -1.73
CD44-236ENST00000533222 CA6P23280 308 aa4.27□□□□□ -1.73
CD44-236ENST00000533222 UBE2D1P51668 147 aa4.27□□□□□ -1.73
CD44-236ENST00000533222 SERTAD4-AS1Q5TG53 156 aa4.27□□□□□ -1.73
CD44-236ENST00000533222 ZNF493Q6ZR52 646 aa4.27□□□□□ -1.73
CD44-236ENST00000533222 ODF3L1Q8IXM7 274 aa4.27□□□□□ -1.73
CD44-236ENST00000533222 LINC00311Q8N616 119 aa4.27□□□□□ -1.73
CD44-236ENST00000533222 KLHDC9Q8NEP7 349 aa4.27□□□□□ -1.73
CD44-236ENST00000533222 GATAD1Q8WUU5 269 aa4.27□□□□□ -1.73
CD44-236ENST00000533222 FAM19A4Q96LR4 140 aa4.27□□□□□ -1.73
CD44-236ENST00000533222 C18orf15Q96N68 181 aa4.27□□□□□ -1.73
CD44-236ENST00000533222 S1PR3Q99500 378 aa4.27□□□□□ -1.73
CD44-236ENST00000533222 CHCHD5Q9BSY4 110 aa4.27□□□□□ -1.73
CD44-236ENST00000533222 UPK3BQ9BT76 320 aa4.27□□□□□ -1.73
CD44-236ENST00000533222 PAXXQ9BUH6 204 aa4.27□□□□□ -1.73
CD44-236ENST00000533222 KRTAP17-1Q9BYP8 105 aa4.27□□□□□ -1.73
CD44-236ENST00000533222 LIME1Q9H400 295 aa4.27□□□□□ -1.73
CD44-236ENST00000533222 GLIPR2Q9H4G4 154 aa4.27□□□□□ -1.73
CD44-236ENST00000533222 DPH3P1Q9H4G8 78 aa4.27□□□□□ -1.73
CD44-236ENST00000533222 FGF22Q9HCT0 170 aa4.27□□□□□ -1.73
CD44-236ENST00000533222 DYNLRB1Q9NP97 96 aa4.27□□□□□ -1.73
CD44-236ENST00000533222 Q9UF83 564 aa4.27□□□□□ -1.73
CD44-236ENST00000533222 C19orf25Q9UFG5 118 aaPredicted RBP4.27□□□□□ -1.73
CD44-236ENST00000533222 HILPDAQ9Y5L2 63 aa4.27□□□□□ -1.73
CD44-236ENST00000533222 TRPM6Q9BX84 2022 aa4.27□□□□□ -1.73
CD44-236ENST00000533222 DOCK4Q8N1I0 1966 aa4.27□□□□□ -1.73
CD44-236ENST00000533222 ZNF831Q5JPB2 1677 aa4.26□□□□□ -1.73
CD44-236ENST00000533222 LYRM9A8MSI8 78 aa4.26□□□□□ -1.73
CD44-236ENST00000533222 EPPINO95925 133 aa4.26□□□□□ -1.73
CD44-236ENST00000533222 IGKV2-30P06310 120 aa4.26□□□□□ -1.73
CD44-236ENST00000533222 GFERP55789 205 aa4.26□□□□□ -1.73
CD44-236ENST00000533222 ABCA11PQ4W5N1 156 aa4.26□□□□□ -1.73
CD44-236ENST00000533222 LINC01590Q5TEZ4 76 aa4.26□□□□□ -1.73
CD44-236ENST00000533222 HIST2H2BCQ6DN03 193 aa4.26□□□□□ -1.73
CD44-236ENST00000533222 HIST2H2BDQ6DRA6 164 aa4.26□□□□□ -1.73
CD44-236ENST00000533222 KCTD18Q6PI47 426 aaPredicted RBP4.26□□□□□ -1.73
CD44-236ENST00000533222 Q6ZQT7 251 aa4.26□□□□□ -1.73
CD44-236ENST00000533222 GVQW1Q8N7I0 195 aa4.26□□□□□ -1.73
CD44-236ENST00000533222 NABP1Q96AH0 204 aa4.26□□□□□ -1.73
CD44-236ENST00000533222 BORCS8Q96FH0 119 aa4.26□□□□□ -1.73
CD44-236ENST00000533222 ZC2HC1AQ96GY0 325 aa4.26□□□□□ -1.73
CD44-236ENST00000533222 DEFB118Q96PH6 123 aa4.26□□□□□ -1.73
CD44-236ENST00000533222 AICDAQ9GZX7 198 aa4.26□□□□□ -1.73
CD44-236ENST00000533222 DAZ1Q9NQZ3 744 aaKnown RBP4.26□□□□□ -1.73
CD44-236ENST00000533222 NHP2Q9NX24 153 aaKnown RBP4.26□□□□□ -1.73
CD44-236ENST00000533222 CALYQ9NYX4 217 aa4.26□□□□□ -1.73
CD44-236ENST00000533222 TP73-AS1Q9UF72 201 aa4.26□□□□□ -1.73
CD44-236ENST00000533222 PTPRDP23468 1912 aa4.26□□□□□ -1.73
CD44-236ENST00000533222 SCN10AQ9Y5Y9 1956 aa4.25□□□□□ -1.73
CD44-236ENST00000533222 TRBV20OR9-2A0A075B6H5 130 aa4.25□□□□□ -1.73
CD44-236ENST00000533222 TRBV7-3A0A075B6L6 115 aa4.25□□□□□ -1.73
CD44-236ENST00000533222 TRBV25-1A0A075B6N4 114 aa4.25□□□□□ -1.73
CD44-236ENST00000533222 A0A1B0GVT2 93 aa4.25□□□□□ -1.73
CD44-236ENST00000533222 NDUFC1O43677 76 aa4.25□□□□□ -1.73
CD44-236ENST00000533222 SLC25A20O43772 301 aa4.25□□□□□ -1.73
CD44-236ENST00000533222 HERV-K104P61576 105 aa4.25□□□□□ -1.73
CD44-236ENST00000533222 FKBP1BP68106 108 aa4.25□□□□□ -1.73
CD44-236ENST00000533222 ADIGQ0VDE8 80 aa4.25□□□□□ -1.73
CD44-236ENST00000533222 ERCC8Q13216 396 aa4.25□□□□□ -1.73
CD44-236ENST00000533222 RSPO1Q2MKA7 263 aaPredicted RBP4.25□□□□□ -1.73
CD44-236ENST00000533222 LYZL2Q7Z4W2 148 aa4.25□□□□□ -1.73
CD44-236ENST00000533222 NDUFA11Q86Y39 141 aa4.25□□□□□ -1.73
CD44-236ENST00000533222 DEFB106AQ8N104 65 aa4.25□□□□□ -1.73
CD44-236ENST00000533222 RNF182Q8N6D2 247 aa4.25□□□□□ -1.73
CD44-236ENST00000533222 MRPL53Q96EL3 112 aaKnown RBP4.25□□□□□ -1.73
CD44-236ENST00000533222 Q96M85 177 aa4.25□□□□□ -1.73
CD44-236ENST00000533222 TAAR2Q9P1P5 351 aa4.25□□□□□ -1.73
CD44-236ENST00000533222 LSM7Q9UK45 103 aaKnown RBP4.25□□□□□ -1.73
CD44-236ENST00000533222 IGHV1-58A0A0C4DH39 117 aa4.24□□□□□ -1.73
CD44-236ENST00000533222 TRBV5-4A0A0C4DH59 114 aa4.24□□□□□ -1.73
CD44-236ENST00000533222 UBE2L5PA0A1B0GUS4 154 aa4.24□□□□□ -1.73
CD44-236ENST00000533222 PLAC8L1A1L4L8 177 aa4.24□□□□□ -1.73
CD44-236ENST00000533222 C19orf71A6NCJ1 209 aa4.24□□□□□ -1.73
CD44-236ENST00000533222 LINC01546A6NGU7 62 aa4.24□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 51 ms