RNA–Protein interactions for RNA: ENST00000528455.5

CD44-228, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 687 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-228ENST00000528455 LYPD6BQ8NI32 183 aa5.61□□□□□ -1.51
CD44-228ENST00000528455 ZNF503Q96F45 646 aa5.61□□□□□ -1.51
CD44-228ENST00000528455 GRAMD2BQ96HH9 432 aa5.61□□□□□ -1.51
CD44-228ENST00000528455 ELOVL1Q9BW60 279 aa5.61□□□□□ -1.51
CD44-228ENST00000528455 TMEM14CQ9P0S9 112 aa5.61□□□□□ -1.51
CD44-228ENST00000528455 TMEM213A2RRL7 107 aa5.6□□□□□ -1.51
CD44-228ENST00000528455 C2orf70A6NJV1 201 aa5.6□□□□□ -1.51
CD44-228ENST00000528455 ZNF705EA8MWA4 302 aaPredicted RBP5.6□□□□□ -1.51
CD44-228ENST00000528455 DIRC3C9JPN6 131 aa5.6□□□□□ -1.51
CD44-228ENST00000528455 H3BRN7 92 aa5.6□□□□□ -1.51
CD44-228ENST00000528455 CHEK1O14757 476 aa5.6□□□□□ -1.51
CD44-228ENST00000528455 CXorf1O96002 111 aa5.6□□□□□ -1.51
CD44-228ENST00000528455 CSN3P07498 182 aa5.6□□□□□ -1.51
CD44-228ENST00000528455 FOLR2P14207 255 aa5.6□□□□□ -1.51
CD44-228ENST00000528455 RPL7P18124 248 aaKnown RBP5.6□□□□□ -1.51
CD44-228ENST00000528455 CDC34P49427 236 aaPredicted RBP5.6□□□□□ -1.51
CD44-228ENST00000528455 FHITP49789 147 aa5.6□□□□□ -1.51
CD44-228ENST00000528455 INSL3P51460 131 aa5.6□□□□□ -1.51
CD44-228ENST00000528455 HIST2H2BDQ6DRA6 164 aa5.6□□□□□ -1.51
CD44-228ENST00000528455 FAM122CQ6P4D5 195 aa5.6□□□□□ -1.51
CD44-228ENST00000528455 C16orf54Q6UWD8 224 aa5.6□□□□□ -1.51
CD44-228ENST00000528455 IL34Q6ZMJ4 242 aa5.6□□□□□ -1.51
CD44-228ENST00000528455 PQLC2Q6ZP29 291 aa5.6□□□□□ -1.51
CD44-228ENST00000528455 BPIFA4PQ86YQ2 179 aa5.6□□□□□ -1.51
CD44-228ENST00000528455 OR8I2Q8N0Y5 310 aa5.6□□□□□ -1.51
CD44-228ENST00000528455 FAM213BQ8TBF2 198 aa5.6□□□□□ -1.51
CD44-228ENST00000528455 SUN5Q8TC36 379 aa5.6□□□□□ -1.51
CD44-228ENST00000528455 SFT2D1Q8WV19 159 aa5.6□□□□□ -1.51
CD44-228ENST00000528455 FAM167A-AS1Q96KT0 104 aa5.6□□□□□ -1.51
CD44-228ENST00000528455 DUX3Q96PT4 197 aa5.6□□□□□ -1.51
CD44-228ENST00000528455 UHRF2Q96PU4 802 aa5.6□□□□□ -1.51
CD44-228ENST00000528455 RHPN1-AS1Q9BWJ2 59 aa5.6□□□□□ -1.51
CD44-228ENST00000528455 OR51M1Q9H341 326 aa5.6□□□□□ -1.51
CD44-228ENST00000528455 DOK5Q9P104 306 aa5.6□□□□□ -1.51
CD44-228ENST00000528455 NOTCH1P46531 2555 aa5.6□□□□□ -1.51
CD44-228ENST00000528455 HELTA6NFD8 242 aa5.59□□□□□ -1.51
CD44-228ENST00000528455 HBE1P02100 147 aa5.59□□□□□ -1.51
CD44-228ENST00000528455 APOHP02749 345 aaPredicted RBP5.59□□□□□ -1.51
CD44-228ENST00000528455 NBEAP1P0C6P0 100 aa5.59□□□□□ -1.51
CD44-228ENST00000528455 HIST1H1EP10412 219 aaKnown RBP5.59□□□□□ -1.51
CD44-228ENST00000528455 GCSHP23434 173 aa5.59□□□□□ -1.51
CD44-228ENST00000528455 PSMB3P49720 205 aa5.59□□□□□ -1.51
CD44-228ENST00000528455 MEOX2P50222 304 aa5.59□□□□□ -1.51
CD44-228ENST00000528455 PPT1P50897 306 aa5.59□□□□□ -1.51
CD44-228ENST00000528455 DEFA6Q01524 100 aa5.59□□□□□ -1.51
CD44-228ENST00000528455 ZNF726P1Q15940 193 aa5.59□□□□□ -1.51
CD44-228ENST00000528455 GUK1Q16774 197 aa5.59□□□□□ -1.51
CD44-228ENST00000528455 KHDC3LQ587J8 217 aa5.59□□□□□ -1.51
CD44-228ENST00000528455 CLLU1Q5K131 121 aa5.59□□□□□ -1.51
CD44-228ENST00000528455 FAM74A1Q5RGS3 127 aa5.59□□□□□ -1.51
CD44-228ENST00000528455 FAM90A2PQ658T7 463 aa5.59□□□□□ -1.51
CD44-228ENST00000528455 MIR17HGQ75NE6 70 aa5.59□□□□□ -1.51
CD44-228ENST00000528455 MCRIP2Q9BUT9 160 aaKnown RBP5.59□□□□□ -1.51
CD44-228ENST00000528455 HRH4Q9H3N8 390 aa5.59□□□□□ -1.51
CD44-228ENST00000528455 TMEM167BQ9NRX6 74 aa5.59□□□□□ -1.51
CD44-228ENST00000528455 IGHV3OR16-8A0A075B7F1 116 aa5.58□□□□□ -1.52
CD44-228ENST00000528455 TRAV5A0A0B4J249 113 aa5.58□□□□□ -1.52
CD44-228ENST00000528455 TRAV25A0A0B4J276 109 aa5.58□□□□□ -1.52
CD44-228ENST00000528455 PRSS29PA6NIE9 313 aa5.58□□□□□ -1.52
CD44-228ENST00000528455 MRPS12O15235 138 aaKnown RBP5.58□□□□□ -1.52
CD44-228ENST00000528455 ZNF207O43670 478 aaKnown RBP5.58□□□□□ -1.52
CD44-228ENST00000528455 GALR1P47211 349 aa5.58□□□□□ -1.52
CD44-228ENST00000528455 PAFAH1B2P68402 229 aa5.58□□□□□ -1.52
CD44-228ENST00000528455 DEFB114Q30KQ6 69 aa5.58□□□□□ -1.52
CD44-228ENST00000528455 MORN5Q5VZ52 161 aa5.58□□□□□ -1.52
CD44-228ENST00000528455 SPATA31B1PQ5VZV4 182 aa5.58□□□□□ -1.52
CD44-228ENST00000528455 LCN15Q6UWW0 184 aa5.58□□□□□ -1.52
CD44-228ENST00000528455 SIGLEC15Q6ZMC9 328 aa5.58□□□□□ -1.52
CD44-228ENST00000528455 ADAMTSL5Q6ZMM2 481 aa5.58□□□□□ -1.52
CD44-228ENST00000528455 LYPD1Q8N2G4 141 aa5.58□□□□□ -1.52
CD44-228ENST00000528455 OR2K2Q8NGT1 345 aa5.58□□□□□ -1.52
CD44-228ENST00000528455 GLMPQ8WWB7 406 aa5.58□□□□□ -1.52
CD44-228ENST00000528455 PAXXQ9BUH6 204 aa5.58□□□□□ -1.52
CD44-228ENST00000528455 C1orf43Q9BWL3 253 aa5.58□□□□□ -1.52
CD44-228ENST00000528455 SCRT1Q9BWW7 348 aa5.58□□□□□ -1.52
CD44-228ENST00000528455 SLC25A2Q9BXI2 301 aa5.58□□□□□ -1.52
CD44-228ENST00000528455 NKX6-2Q9C056 277 aaPredicted RBP5.58□□□□□ -1.52
CD44-228ENST00000528455 CLEC5AQ9NY25 188 aa5.58□□□□□ -1.52
CD44-228ENST00000528455 SMAD5-AS1Q9Y6J3 95 aa5.58□□□□□ -1.52
CD44-228ENST00000528455 TGP01266 2768 aa5.57□□□□□ -1.52
CD44-228ENST00000528455 A0A087X0K7 114 aa5.57□□□□□ -1.52
CD44-228ENST00000528455 MAP1LC3B2A6NCE7 125 aa5.57□□□□□ -1.52
CD44-228ENST00000528455 ZNF785A8K8V0 405 aa5.57□□□□□ -1.52
CD44-228ENST00000528455 OR7C2O60412 319 aa5.57□□□□□ -1.52
CD44-228ENST00000528455 NMBP08949 121 aa5.57□□□□□ -1.52
CD44-228ENST00000528455 ARL14EPLP0DKL9 152 aa5.57□□□□□ -1.52
CD44-228ENST00000528455 IGLC2P0DOY2 106 aa5.57□□□□□ -1.52
CD44-228ENST00000528455 GCHFRP30047 84 aa5.57□□□□□ -1.52
CD44-228ENST00000528455 TAGLN2P37802 199 aaKnown RBP5.57□□□□□ -1.52
CD44-228ENST00000528455 PDE6HQ13956 83 aa5.57□□□□□ -1.52
CD44-228ENST00000528455 SAMD13Q5VXD3 122 aa5.57□□□□□ -1.52
CD44-228ENST00000528455 LEMD1Q68G75 181 aa5.57□□□□□ -1.52
CD44-228ENST00000528455 SSX7Q7RTT5 188 aa5.57□□□□□ -1.52
CD44-228ENST00000528455 ARL6IP6Q8N6S5 226 aa5.57□□□□□ -1.52
CD44-228ENST00000528455 FXYD5Q96DB9 178 aa5.57□□□□□ -1.52
CD44-228ENST00000528455 MAP1LC3BQ9GZQ8 125 aa5.57□□□□□ -1.52
CD44-228ENST00000528455 SLC25A22Q9H936 323 aa5.57□□□□□ -1.52
CD44-228ENST00000528455 MLXQ9UH92 298 aa5.57□□□□□ -1.52
CD44-228ENST00000528455 TRBV19A0A075B6N1 114 aa5.56□□□□□ -1.52
CD44-228ENST00000528455 IGHV3OR16-13A0A075B7E8 117 aa5.56□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 66.1 ms