RNA–Protein interactions for RNA: ENST00000514093.5

SQSTM1-215, Transcript of sequestosome 1, humanhuman

TSL 5

Gene SQSTM1, Length 842 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-215ENST00000514093 OR51S1Q8NGJ8 323 aa13.86□□□□□ -0.19
SQSTM1-215ENST00000514093 LRRC20Q8TCA0 184 aa13.86□□□□□ -0.19
SQSTM1-215ENST00000514093 RPUSD4Q96CM3 377 aaKnown RBP13.86□□□□□ -0.19
SQSTM1-215ENST00000514093 PRSS46E5RG02 174 aa13.85□□□□□ -0.19
SQSTM1-215ENST00000514093 NXPH4O95158 308 aa13.85□□□□□ -0.19
SQSTM1-215ENST00000514093 RPL7P18124 248 aaKnown RBP13.85□□□□□ -0.19
SQSTM1-215ENST00000514093 Q6ZTI0 123 aa13.85□□□□□ -0.19
SQSTM1-215ENST00000514093 TMED4Q7Z7H5 227 aa13.85□□□□□ -0.19
SQSTM1-215ENST00000514093 SHANK2-AS3Q9BTD1 123 aa13.85□□□□□ -0.19
SQSTM1-215ENST00000514093 J3KRW8 73 aa13.84□□□□□ -0.19
SQSTM1-215ENST00000514093 PITX3O75364 302 aa13.84□□□□□ -0.19
SQSTM1-215ENST00000514093 SNRPCP09234 159 aaKnown RBP13.84□□□□□ -0.19
SQSTM1-215ENST00000514093 GCSHP23434 173 aa13.84□□□□□ -0.19
SQSTM1-215ENST00000514093 S100A7P31151 101 aa13.84□□□□□ -0.19
SQSTM1-215ENST00000514093 AKR1C1Q04828 323 aa13.84□□□□□ -0.19
SQSTM1-215ENST00000514093 GFI1BQ5VTD9 330 aa13.84□□□□□ -0.19
SQSTM1-215ENST00000514093 C15orf40Q8WUR7 153 aa13.84□□□□□ -0.19
SQSTM1-215ENST00000514093 AKAIN1P0CW23 69 aa13.83□□□□□ -0.2
SQSTM1-215ENST00000514093 RAP2BP61225 183 aa13.83□□□□□ -0.2
SQSTM1-215ENST00000514093 AP3S1Q92572 193 aa13.83□□□□□ -0.2
SQSTM1-215ENST00000514093 PRRT1Q99946 306 aa13.83□□□□□ -0.2
SQSTM1-215ENST00000514093 VCX3AQ9NNX9 186 aa13.83□□□□□ -0.2
SQSTM1-215ENST00000514093 HIGD1AQ9Y241 93 aa13.83□□□□□ -0.2
SQSTM1-215ENST00000514093 WRBO00258 174 aa13.82□□□□□ -0.2
SQSTM1-215ENST00000514093 OR5G3P0C626 314 aa13.82□□□□□ -0.2
SQSTM1-215ENST00000514093 SSBP1Q04837 148 aaKnown RBP13.82□□□□□ -0.2
SQSTM1-215ENST00000514093 CCDC190Q86UF4 302 aa13.82□□□□□ -0.2
SQSTM1-215ENST00000514093 CLVS1Q8IUQ0 354 aaPredicted RBP13.82□□□□□ -0.2
SQSTM1-215ENST00000514093 C20orf144Q9BQM9 153 aa13.82□□□□□ -0.2
SQSTM1-215ENST00000514093 MIXL1Q9H2W2 232 aa13.82□□□□□ -0.2
SQSTM1-215ENST00000514093 A0A087WXM4 84 aa13.81□□□□□ -0.2
SQSTM1-215ENST00000514093 A0A087X0K7 114 aa13.81□□□□□ -0.2
SQSTM1-215ENST00000514093 HYPMO75409 117 aa13.81□□□□□ -0.2
SQSTM1-215ENST00000514093 IL5P05113 134 aa13.81□□□□□ -0.2
SQSTM1-215ENST00000514093 CYP2G1PQ6ZSU1 146 aa13.81□□□□□ -0.2
SQSTM1-215ENST00000514093 TRGV2A0A075B6R0 118 aa13.8□□□□□ -0.2
SQSTM1-215ENST00000514093 PRAC2D3DTV9 90 aa13.8□□□□□ -0.2
SQSTM1-215ENST00000514093 SPANXN5Q5MJ07 72 aa13.8□□□□□ -0.2
SQSTM1-215ENST00000514093 ACOT7LQ6ZUV0 252 aa13.8□□□□□ -0.2
SQSTM1-215ENST00000514093 NFE4Q86UQ8 179 aa13.8□□□□□ -0.2
SQSTM1-215ENST00000514093 TRAV12-3A0A0B4J271 114 aa13.79□□□□□ -0.2
SQSTM1-215ENST00000514093 SMCO3A2RU48 225 aa13.79□□□□□ -0.2
SQSTM1-215ENST00000514093 PMS2P5A8MQ11 134 aa13.79□□□□□ -0.2
SQSTM1-215ENST00000514093 H3BP45 60 aa13.79□□□□□ -0.2
SQSTM1-215ENST00000514093 ANXA3P12429 323 aa13.79□□□□□ -0.2
SQSTM1-215ENST00000514093 ANXA7P20073 488 aaKnown RBP13.79□□□□□ -0.2
SQSTM1-215ENST00000514093 DAZ2Q13117 558 aaKnown RBP13.79□□□□□ -0.2
SQSTM1-215ENST00000514093 SMIM4Q8WVI0 70 aa13.79□□□□□ -0.2
SQSTM1-215ENST00000514093 NAA50Q9GZZ1 169 aaKnown RBP13.79□□□□□ -0.2
SQSTM1-215ENST00000514093 LINC00869P0C866 280 aa13.78□□□□□ -0.2
SQSTM1-215ENST00000514093 RPP30P78346 268 aaKnown RBP13.78□□□□□ -0.2
SQSTM1-215ENST00000514093 SRPXP78539 464 aa13.78□□□□□ -0.2
SQSTM1-215ENST00000514093 HMCN2Q8NDA2 5059 aa13.78□□□□□ -0.2
SQSTM1-215ENST00000514093 H3BTX0 84 aa13.77□□□□□ -0.21
SQSTM1-215ENST00000514093 MRPS12O15235 138 aaKnown RBP13.77□□□□□ -0.21
SQSTM1-215ENST00000514093 RGS5O15539 181 aa13.77□□□□□ -0.21
SQSTM1-215ENST00000514093 SYNGR2O43760 224 aa13.77□□□□□ -0.21
SQSTM1-215ENST00000514093 MED6O75586 246 aa13.77□□□□□ -0.21
SQSTM1-215ENST00000514093 MRPS10P82664 201 aaKnown RBP13.77□□□□□ -0.21
SQSTM1-215ENST00000514093 SCGB3A2Q96PL1 93 aa13.77□□□□□ -0.21
SQSTM1-215ENST00000514093 CIB3Q96Q77 187 aaPredicted RBP13.77□□□□□ -0.21
SQSTM1-215ENST00000514093 ZNF331Q9NQX6 463 aaPredicted RBP13.77□□□□□ -0.21
SQSTM1-215ENST00000514093 GSN-AS1Q9NRJ2 163 aa13.77□□□□□ -0.21
SQSTM1-215ENST00000514093 SCP2D1Q9UJQ7 156 aa13.77□□□□□ -0.21
SQSTM1-215ENST00000514093 TRGV1A0A0A0MS02 117 aa13.76□□□□□ -0.21
SQSTM1-215ENST00000514093 CTDSP2O14595 271 aa13.76□□□□□ -0.21
SQSTM1-215ENST00000514093 LYPD5Q6UWN5 251 aa13.76□□□□□ -0.21
SQSTM1-215ENST00000514093 PATE2Q6UY27 113 aa13.76□□□□□ -0.21
SQSTM1-215ENST00000514093 ARL6Q9H0F7 186 aa13.76□□□□□ -0.21
SQSTM1-215ENST00000514093 MCUBQ9NWR8 336 aa13.76□□□□□ -0.21
SQSTM1-215ENST00000514093 ICOSQ9Y6W8 199 aa13.76□□□□□ -0.21
SQSTM1-215ENST00000514093 LINC00854A0A1B0GVQ3 168 aa13.75□□□□□ -0.21
SQSTM1-215ENST00000514093 PAX4O43316 350 aa13.75□□□□□ -0.21
SQSTM1-215ENST00000514093 IGHV3-53P01767 116 aa13.75□□□□□ -0.21
SQSTM1-215ENST00000514093 CT45A10P0DMU9 189 aa13.75□□□□□ -0.21
SQSTM1-215ENST00000514093 PLP1P60201 277 aa13.75□□□□□ -0.21
SQSTM1-215ENST00000514093 ZNF431Q8TF32 576 aaPredicted RBP13.75□□□□□ -0.21
SQSTM1-215ENST00000514093 FUT9Q9Y231 359 aa13.75□□□□□ -0.21
SQSTM1-215ENST00000514093 DNAH8Q96JB1 4490 aa13.75□□□□□ -0.21
SQSTM1-215ENST00000514093 ZNF324O75467 553 aaPredicted RBP13.74□□□□□ -0.21
SQSTM1-215ENST00000514093 PYGO2Q9BRQ0 406 aa13.74□□□□□ -0.21
SQSTM1-215ENST00000514093 MSRB1Q9NZV6 116 aa13.74□□□□□ -0.21
SQSTM1-215ENST00000514093 STRAPQ9Y3F4 350 aaKnown RBP13.74□□□□□ -0.21
SQSTM1-215ENST00000514093 LY96Q9Y6Y9 160 aa13.74□□□□□ -0.21
SQSTM1-215ENST00000514093 TRAV9-2A0A087WT02 112 aa13.73□□□□□ -0.21
SQSTM1-215ENST00000514093 IGLV5-52A0A0A0MRZ9 124 aa13.73□□□□□ -0.21
SQSTM1-215ENST00000514093 DUXBA0A1W2PPF3 345 aa13.73□□□□□ -0.21
SQSTM1-215ENST00000514093 ANKRD20A5PA0PJZ0 165 aa13.73□□□□□ -0.21
SQSTM1-215ENST00000514093 SLC17A3O00476 420 aa13.73□□□□□ -0.21
SQSTM1-215ENST00000514093 IL18Q14116 193 aa13.73□□□□□ -0.21
SQSTM1-215ENST00000514093 CTF1Q16619 201 aa13.73□□□□□ -0.21
SQSTM1-215ENST00000514093 LCN15Q6UWW0 184 aa13.73□□□□□ -0.21
SQSTM1-215ENST00000514093 ZBTB8BQ8NAP8 495 aaPredicted RBP13.73□□□□□ -0.21
SQSTM1-215ENST00000514093 C11orf72Q8NBR9 251 aa13.73□□□□□ -0.21
SQSTM1-215ENST00000514093 ARV1Q9H2C2 271 aa13.73□□□□□ -0.21
SQSTM1-215ENST00000514093 SLC25A6P12236 298 aa13.72□□□□□ -0.21
SQSTM1-215ENST00000514093 RRAS2P62070 204 aaPredicted RBP13.72□□□□□ -0.21
SQSTM1-215ENST00000514093 SLC50A1Q9BRV3 221 aa13.72□□□□□ -0.21
SQSTM1-215ENST00000514093 TMEM70Q9BUB7 260 aa13.72□□□□□ -0.21
SQSTM1-215ENST00000514093 KLF12Q9Y4X4 402 aa13.72□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 58.7 ms