RNA–Protein interactions for RNA: ENST00000486100.1

PRPF40A-209, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 4

Gene PRPF40A, Length 569 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-209ENST00000486100 KMT2AQ03164 3969 aa13.19□□□□□ -0.3
PRPF40A-209ENST00000486100 IGHV4-4A0A075B6R2 117 aa13.18□□□□□ -0.3
PRPF40A-209ENST00000486100 COX7A2P2O60397 106 aa13.18□□□□□ -0.3
PRPF40A-209ENST00000486100 HBE1P02100 147 aa13.18□□□□□ -0.3
PRPF40A-209ENST00000486100 S100A11P31949 105 aa13.18□□□□□ -0.3
PRPF40A-209ENST00000486100 SULT1A1P50225 295 aa13.18□□□□□ -0.3
PRPF40A-209ENST00000486100 PSG3Q16557 428 aa13.18□□□□□ -0.3
PRPF40A-209ENST00000486100 Q6ZRG5 221 aa13.18□□□□□ -0.3
PRPF40A-209ENST00000486100 NRARPQ7Z6K4 114 aa13.18□□□□□ -0.3
PRPF40A-209ENST00000486100 TMEM252Q8N6L7 170 aa13.18□□□□□ -0.3
PRPF40A-209ENST00000486100 OR11H7Q8NGC8 314 aa13.18□□□□□ -0.3
PRPF40A-209ENST00000486100 ENKURQ8TC29 256 aa13.18□□□□□ -0.3
PRPF40A-209ENST00000486100 GPN1Q9HCN4 374 aaPredicted RBP13.18□□□□□ -0.3
PRPF40A-209ENST00000486100 DNAJC4Q9NNZ3 241 aa13.18□□□□□ -0.3
PRPF40A-209ENST00000486100 UQCC1Q9NVA1 299 aa13.18□□□□□ -0.3
PRPF40A-209ENST00000486100 WDR83OSQ9Y284 106 aa13.18□□□□□ -0.3
PRPF40A-209ENST00000486100 CXCL2P19875 107 aa13.17□□□□□ -0.3
PRPF40A-209ENST00000486100 IFITM3Q01628 133 aa13.17□□□□□ -0.3
PRPF40A-209ENST00000486100 VWC2Q2TAL6 325 aa13.17□□□□□ -0.3
PRPF40A-209ENST00000486100 C10orf113Q5VZT2 155 aa13.17□□□□□ -0.3
PRPF40A-209ENST00000486100 BPIFA4PQ86YQ2 179 aa13.17□□□□□ -0.3
PRPF40A-209ENST00000486100 DKK2Q9UBU2 259 aa13.17□□□□□ -0.3
PRPF40A-209ENST00000486100 TEX48A0A1B0GUV7 120 aa13.16□□□□□ -0.3
PRPF40A-209ENST00000486100 IGSF23A1L1A6 192 aa13.16□□□□□ -0.3
PRPF40A-209ENST00000486100 CRXO43186 299 aaPredicted RBP13.16□□□□□ -0.3
PRPF40A-209ENST00000486100 PRR20EP86478 221 aa13.16□□□□□ -0.3
PRPF40A-209ENST00000486100 PRR20CP86479 221 aa13.16□□□□□ -0.3
PRPF40A-209ENST00000486100 PRR20DP86480 221 aa13.16□□□□□ -0.3
PRPF40A-209ENST00000486100 PRR20BP86481 221 aa13.16□□□□□ -0.3
PRPF40A-209ENST00000486100 PRR20AP86496 221 aa13.16□□□□□ -0.3
PRPF40A-209ENST00000486100 SPINK13Q1W4C9 94 aa13.16□□□□□ -0.3
PRPF40A-209ENST00000486100 RRN3P1Q2M238 152 aa13.16□□□□□ -0.3
PRPF40A-209ENST00000486100 MIC13Q5XKP0 118 aa13.16□□□□□ -0.3
PRPF40A-209ENST00000486100 STX12Q86Y82 276 aa13.16□□□□□ -0.3
PRPF40A-209ENST00000486100 OR8A1Q8NGG7 326 aa13.16□□□□□ -0.3
PRPF40A-209ENST00000486100 TMEM208Q9BTX3 173 aa13.16□□□□□ -0.3
PRPF40A-209ENST00000486100 VPS13DQ5THJ4 4388 aa13.16□□□□□ -0.3
PRPF40A-209ENST00000486100 LOC102723971A0A1B0GUV8 181 aa13.15□□□□□ -0.3
PRPF40A-209ENST00000486100 M0R2Z0 102 aa13.15□□□□□ -0.3
PRPF40A-209ENST00000486100 HBG1P69891 147 aa13.15□□□□□ -0.3
PRPF40A-209ENST00000486100 HBG2P69892 147 aa13.15□□□□□ -0.3
PRPF40A-209ENST00000486100 ATP6V1FQ16864 119 aa13.15□□□□□ -0.3
PRPF40A-209ENST00000486100 FAM222AQ5U5X8 452 aa13.15□□□□□ -0.3
PRPF40A-209ENST00000486100 MORN5Q5VZ52 161 aa13.15□□□□□ -0.3
PRPF40A-209ENST00000486100 LCN15Q6UWW0 184 aa13.15□□□□□ -0.3
PRPF40A-209ENST00000486100 CHAC2Q8WUX2 184 aa13.15□□□□□ -0.3
PRPF40A-209ENST00000486100 SLC50A1Q9BRV3 221 aa13.15□□□□□ -0.3
PRPF40A-209ENST00000486100 ZNF331Q9NQX6 463 aaPredicted RBP13.15□□□□□ -0.3
PRPF40A-209ENST00000486100 INSP01308 110 aa13.14□□□□□ -0.31
PRPF40A-209ENST00000486100 RPL29P47914 159 aaKnown RBP13.14□□□□□ -0.31
PRPF40A-209ENST00000486100 B2MP61769 119 aa13.14□□□□□ -0.31
PRPF40A-209ENST00000486100 RHOBP62745 196 aa13.14□□□□□ -0.31
PRPF40A-209ENST00000486100 HIST1H1AQ02539 215 aaPredicted RBP13.14□□□□□ -0.31
PRPF40A-209ENST00000486100 OPCMLQ14982 345 aa13.14□□□□□ -0.31
PRPF40A-209ENST00000486100 OR1L4Q8NGR5 311 aa13.14□□□□□ -0.31
PRPF40A-209ENST00000486100 RPUSD4Q96CM3 377 aaKnown RBP13.14□□□□□ -0.31
PRPF40A-209ENST00000486100 NIPSNAP3BQ9BS92 247 aa13.14□□□□□ -0.31
PRPF40A-209ENST00000486100 BOLA2-SMG1P6H3BVE0 249 aa13.13□□□□□ -0.31
PRPF40A-209ENST00000486100 PRAF2O60831 178 aa13.13□□□□□ -0.31
PRPF40A-209ENST00000486100 RLN2P04090 185 aa13.13□□□□□ -0.31
PRPF40A-209ENST00000486100 SNRPCP09234 159 aaKnown RBP13.13□□□□□ -0.31
PRPF40A-209ENST00000486100 BAXQ07812 192 aa13.13□□□□□ -0.31
PRPF40A-209ENST00000486100 OXA1LQ15070 435 aa13.13□□□□□ -0.31
PRPF40A-209ENST00000486100 PFDN5Q99471 154 aa13.13□□□□□ -0.31
PRPF40A-209ENST00000486100 SLC39A9Q9NUM3 307 aa13.13□□□□□ -0.31
PRPF40A-209ENST00000486100 PPP1R14DQ9NXH3 145 aa13.13□□□□□ -0.31
PRPF40A-209ENST00000486100 PLA2G2EQ9NZK7 142 aa13.13□□□□□ -0.31
PRPF40A-209ENST00000486100 YTHDF2Q9Y5A9 579 aaKnown RBP13.13□□□□□ -0.31
PRPF40A-209ENST00000486100 UBE2L5PA0A1B0GUS4 154 aa13.12□□□□□ -0.31
PRPF40A-209ENST00000486100 INMT-MINDY4F8WBC2 141 aa13.12□□□□□ -0.31
PRPF40A-209ENST00000486100 SIX6O95475 246 aa13.12□□□□□ -0.31
PRPF40A-209ENST00000486100 IGLC2P0DOY2 106 aa13.12□□□□□ -0.31
PRPF40A-209ENST00000486100 NDUFAF3Q9BU61 184 aa13.12□□□□□ -0.31
PRPF40A-209ENST00000486100 NMES1Q9C002 83 aa13.12□□□□□ -0.31
PRPF40A-209ENST00000486100 TRAV12-2A0A075B6T6 113 aa13.11□□□□□ -0.31
PRPF40A-209ENST00000486100 TRAV5A0A0B4J249 113 aa13.11□□□□□ -0.31
PRPF40A-209ENST00000486100 ZNF705GA8MUZ8 300 aaPredicted RBP13.11□□□□□ -0.31
PRPF40A-209ENST00000486100 H3BQ15 152 aa13.11□□□□□ -0.31
PRPF40A-209ENST00000486100 PTTG1O95997 202 aa13.11□□□□□ -0.31
PRPF40A-209ENST00000486100 BAP18Q8IXM2 172 aa13.11□□□□□ -0.31
PRPF40A-209ENST00000486100 SAT2Q96F10 170 aaPredicted RBP13.11□□□□□ -0.31
PRPF40A-209ENST00000486100 PXMP4Q9Y6I8 212 aa13.11□□□□□ -0.31
PRPF40A-209ENST00000486100 E5RGE8 158 aa13.1□□□□□ -0.31
PRPF40A-209ENST00000486100 H3BTX0 84 aa13.1□□□□□ -0.31
PRPF40A-209ENST00000486100 MPDU1O75352 247 aa13.1□□□□□ -0.31
PRPF40A-209ENST00000486100 PRM2P04554 102 aa13.1□□□□□ -0.31
PRPF40A-209ENST00000486100 PRB4P10163 310 aaPredicted RBP13.1□□□□□ -0.31
PRPF40A-209ENST00000486100 FGF7P21781 194 aa13.1□□□□□ -0.31
PRPF40A-209ENST00000486100 CYCSP99999 105 aaKnown RBP13.1□□□□□ -0.31
PRPF40A-209ENST00000486100 NHLH2Q02577 135 aa13.1□□□□□ -0.31
PRPF40A-209ENST00000486100 GUK1Q16774 197 aa13.1□□□□□ -0.31
PRPF40A-209ENST00000486100 FAM210BQ96KR6 192 aa13.1□□□□□ -0.31
PRPF40A-209ENST00000486100 MARVELD1Q9BSK0 173 aa13.1□□□□□ -0.31
PRPF40A-209ENST00000486100 SLC25A31Q9H0C2 315 aa13.1□□□□□ -0.31
PRPF40A-209ENST00000486100 SLC17A3O00476 420 aa13.09□□□□□ -0.31
PRPF40A-209ENST00000486100 TSPOP30536 169 aa13.09□□□□□ -0.31
PRPF40A-209ENST00000486100 CDKN1BP46527 198 aa13.09□□□□□ -0.31
PRPF40A-209ENST00000486100 TMEM256Q8N2U0 113 aa13.09□□□□□ -0.31
PRPF40A-209ENST00000486100 LINC01587Q99440 93 aa13.09□□□□□ -0.31
PRPF40A-209ENST00000486100 DAD1P61803 113 aa13.08□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 82.3 ms