RNA–Protein interactions for RNA: ENST00000485412.1

SQSTM1-208, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 656 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-208ENST00000485412 LINC01587Q99440 93 aa9.63□□□□□ -0.87
SQSTM1-208ENST00000485412 DMBT1Q9UGM3 2413 aaPredicted RBP9.62□□□□□ -0.87
SQSTM1-208ENST00000485412 MRPS12O15235 138 aaKnown RBP9.62□□□□□ -0.87
SQSTM1-208ENST00000485412 IL5P05113 134 aa9.62□□□□□ -0.87
SQSTM1-208ENST00000485412 ATP5G1P05496 136 aa9.62□□□□□ -0.87
SQSTM1-208ENST00000485412 LINC00869P0C866 280 aa9.62□□□□□ -0.87
SQSTM1-208ENST00000485412 ATP5G3P48201 142 aa9.62□□□□□ -0.87
SQSTM1-208ENST00000485412 RRAS2P62070 204 aaPredicted RBP9.62□□□□□ -0.87
SQSTM1-208ENST00000485412 RHOBP62745 196 aa9.62□□□□□ -0.87
SQSTM1-208ENST00000485412 PYDC2Q56P42 97 aa9.62□□□□□ -0.87
SQSTM1-208ENST00000485412 TTC32Q5I0X7 151 aa9.62□□□□□ -0.87
SQSTM1-208ENST00000485412 SSX7Q7RTT5 188 aa9.62□□□□□ -0.87
SQSTM1-208ENST00000485412 TOMM5Q8N4H5 51 aa9.62□□□□□ -0.87
SQSTM1-208ENST00000485412 HIGD1AQ9Y241 93 aa9.62□□□□□ -0.87
SQSTM1-208ENST00000485412 STRAPQ9Y3F4 350 aaKnown RBP9.62□□□□□ -0.87
SQSTM1-208ENST00000485412 A0A087X0K7 114 aa9.61□□□□□ -0.87
SQSTM1-208ENST00000485412 CBY3A6NI87 242 aa9.61□□□□□ -0.87
SQSTM1-208ENST00000485412 H3BTX0 84 aa9.61□□□□□ -0.87
SQSTM1-208ENST00000485412 OR5G3P0C626 314 aa9.61□□□□□ -0.87
SQSTM1-208ENST00000485412 FAUP35544 74 aaKnown RBP9.61□□□□□ -0.87
SQSTM1-208ENST00000485412 TAS2R60P59551 318 aa9.61□□□□□ -0.87
SQSTM1-208ENST00000485412 KRTAP10-2P60368 255 aa9.61□□□□□ -0.87
SQSTM1-208ENST00000485412 SLC38A11Q08AI6 406 aa9.61□□□□□ -0.87
SQSTM1-208ENST00000485412 PSG3Q16557 428 aa9.61□□□□□ -0.87
SQSTM1-208ENST00000485412 SPANXN2Q5MJ10 180 aa9.61□□□□□ -0.87
SQSTM1-208ENST00000485412 RNASE8Q8TDE3 154 aaKnown RBP9.61□□□□□ -0.87
SQSTM1-208ENST00000485412 Q9H8V8 135 aa9.61□□□□□ -0.87
SQSTM1-208ENST00000485412 NOP10Q9NPE3 64 aaKnown RBP9.61□□□□□ -0.87
SQSTM1-208ENST00000485412 PRAC2D3DTV9 90 aa9.6□□□□□ -0.87
SQSTM1-208ENST00000485412 SLC17A3O00476 420 aa9.6□□□□□ -0.87
SQSTM1-208ENST00000485412 SSSCA1O60232 199 aa9.6□□□□□ -0.87
SQSTM1-208ENST00000485412 HYPMO75409 117 aa9.6□□□□□ -0.87
SQSTM1-208ENST00000485412 METTL15P1P0C7V9 234 aa9.6□□□□□ -0.87
SQSTM1-208ENST00000485412 INAFM2P0DMQ5 153 aa9.6□□□□□ -0.87
SQSTM1-208ENST00000485412 RPL7P18124 248 aaKnown RBP9.6□□□□□ -0.87
SQSTM1-208ENST00000485412 HOXA5P20719 270 aa9.6□□□□□ -0.87
SQSTM1-208ENST00000485412 PLP1P60201 277 aa9.6□□□□□ -0.87
SQSTM1-208ENST00000485412 RAP2BP61225 183 aa9.6□□□□□ -0.87
SQSTM1-208ENST00000485412 B2MP61769 119 aa9.6□□□□□ -0.87
SQSTM1-208ENST00000485412 RPP30P78346 268 aaKnown RBP9.6□□□□□ -0.87
SQSTM1-208ENST00000485412 ID3Q02535 119 aa9.6□□□□□ -0.87
SQSTM1-208ENST00000485412 MORN5Q5VZ52 161 aa9.6□□□□□ -0.87
SQSTM1-208ENST00000485412 RPUSD4Q96CM3 377 aaKnown RBP9.6□□□□□ -0.87
SQSTM1-208ENST00000485412 ARL6Q9H0F7 186 aa9.6□□□□□ -0.87
SQSTM1-208ENST00000485412 PSENENQ9NZ42 101 aa9.6□□□□□ -0.87
SQSTM1-208ENST00000485412 FLVCR2Q9UPI3 526 aa9.6□□□□□ -0.87
SQSTM1-208ENST00000485412 A0A0J9YY99 117 aa9.59□□□□□ -0.87
SQSTM1-208ENST00000485412 C9orf170A2RU37 121 aa9.59□□□□□ -0.87
SQSTM1-208ENST00000485412 ARL16Q0P5N6 197 aa9.59□□□□□ -0.87
SQSTM1-208ENST00000485412 ZBTB8BQ8NAP8 495 aaPredicted RBP9.59□□□□□ -0.87
SQSTM1-208ENST00000485412 C16orf74Q96GX8 76 aa9.59□□□□□ -0.87
SQSTM1-208ENST00000485412 SLC25A21Q9BQT8 299 aaPredicted RBP9.59□□□□□ -0.87
SQSTM1-208ENST00000485412 TIMM8BQ9Y5J9 83 aaPredicted RBP9.59□□□□□ -0.87
SQSTM1-208ENST00000485412 TRAV26-1A0A087WT03 109 aa9.58□□□□□ -0.88
SQSTM1-208ENST00000485412 LINC00854A0A1B0GVQ3 168 aa9.58□□□□□ -0.88
SQSTM1-208ENST00000485412 AP3S2P59780 193 aa9.58□□□□□ -0.88
SQSTM1-208ENST00000485412 DLK1P80370 383 aa9.58□□□□□ -0.88
SQSTM1-208ENST00000485412 OR5I1Q13606 314 aa9.58□□□□□ -0.88
SQSTM1-208ENST00000485412 GFI1BQ5VTD9 330 aa9.58□□□□□ -0.88
SQSTM1-208ENST00000485412 TMEM256Q8N2U0 113 aa9.58□□□□□ -0.88
SQSTM1-208ENST00000485412 LINC00612Q8N6U2 182 aa9.58□□□□□ -0.88
SQSTM1-208ENST00000485412 TMEM263Q8WUH6 116 aaKnown RBP9.58□□□□□ -0.88
SQSTM1-208ENST00000485412 CCDC32Q9BV29 185 aa9.58□□□□□ -0.88
SQSTM1-208ENST00000485412 ARV1Q9H2C2 271 aa9.58□□□□□ -0.88
SQSTM1-208ENST00000485412 PIGBOS1A0A0B4J2F0 54 aa9.57□□□□□ -0.88
SQSTM1-208ENST00000485412 J3KRW8 73 aa9.57□□□□□ -0.88
SQSTM1-208ENST00000485412 BTF3P20290 206 aaKnown RBP9.57□□□□□ -0.88
SQSTM1-208ENST00000485412 CDKN1BP46527 198 aa9.57□□□□□ -0.88
SQSTM1-208ENST00000485412 TMEM14EPQ6UXP3 125 aa9.57□□□□□ -0.88
SQSTM1-208ENST00000485412 Q6ZNX1 250 aa9.57□□□□□ -0.88
SQSTM1-208ENST00000485412 Q9H3A6 140 aa9.57□□□□□ -0.88
SQSTM1-208ENST00000485412 ZNF331Q9NQX6 463 aaPredicted RBP9.57□□□□□ -0.88
SQSTM1-208ENST00000485412 PPP1R14DQ9NXH3 145 aa9.57□□□□□ -0.88
SQSTM1-208ENST00000485412 hCG_2014768A0A024R1R8 64 aa9.56□□□□□ -0.88
SQSTM1-208ENST00000485412 GAGE12BA1L429 117 aa9.56□□□□□ -0.88
SQSTM1-208ENST00000485412 UPK1BO75841 260 aa9.56□□□□□ -0.88
SQSTM1-208ENST00000485412 GAGE7O76087 117 aa9.56□□□□□ -0.88
SQSTM1-208ENST00000485412 GAGE12FP0CL80 117 aa9.56□□□□□ -0.88
SQSTM1-208ENST00000485412 GAGE12GP0CL81 117 aa9.56□□□□□ -0.88
SQSTM1-208ENST00000485412 GAGE12IP0CL82 117 aa9.56□□□□□ -0.88
SQSTM1-208ENST00000485412 FUSP35637 526 aaKnown RBP eCLIP9.56□□□□□ -0.888e-7■■■■□ 23.3
SQSTM1-208ENST00000485412 UBE2MP61081 183 aaKnown RBP9.56□□□□□ -0.88
SQSTM1-208ENST00000485412 ESRGQ1W209 222 aa9.56□□□□□ -0.88
SQSTM1-208ENST00000485412 LRRC20Q8TCA0 184 aa9.56□□□□□ -0.88
SQSTM1-208ENST00000485412 GNPNAT1Q96EK6 184 aaPredicted RBP9.56□□□□□ -0.88
SQSTM1-208ENST00000485412 SMIM8Q96KF7 97 aa9.56□□□□□ -0.88
SQSTM1-208ENST00000485412 SDHCQ99643 169 aaPredicted RBP9.56□□□□□ -0.88
SQSTM1-208ENST00000485412 SRRQ9GZT4 340 aa9.56□□□□□ -0.88
SQSTM1-208ENST00000485412 RCL1Q9Y2P8 373 aaKnown RBP9.56□□□□□ -0.88
SQSTM1-208ENST00000485412 H3BQ15 152 aa9.55□□□□□ -0.88
SQSTM1-208ENST00000485412 H7BYZ3 331 aa9.55□□□□□ -0.88
SQSTM1-208ENST00000485412 K7EPK0 472 aa9.55□□□□□ -0.88
SQSTM1-208ENST00000485412 SCGB1D2O95969 90 aa9.55□□□□□ -0.88
SQSTM1-208ENST00000485412 ANXA7P20073 488 aaKnown RBP9.55□□□□□ -0.88
SQSTM1-208ENST00000485412 SELENOTP62341 195 aa9.55□□□□□ -0.88
SQSTM1-208ENST00000485412 IFITM3Q01628 133 aa9.55□□□□□ -0.88
SQSTM1-208ENST00000485412 ZNF493Q6ZR52 646 aa9.55□□□□□ -0.88
SQSTM1-208ENST00000485412 LINC00305Q7Z4B0 112 aa9.55□□□□□ -0.88
SQSTM1-208ENST00000485412 RXFP4Q8TDU9 374 aa9.55□□□□□ -0.88
SQSTM1-208ENST00000485412 TMEM37Q8WXS4 190 aa9.55□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 116.7 ms