RNA–Protein interactions for RNA: ENST00000474643.5

VARS-223, Transcript of valyl-tRNA synthetase, humanhuman

TSL 5

Gene VARS, Length 885 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-223ENST00000474643 PLECQ15149 4684 aaKnown RBP11.05□□□□□ -0.64
VARS-223ENST00000474643 KANTRA0A1W2PQU2 76 aa11.05□□□□□ -0.64
VARS-223ENST00000474643 KNCNA6PVL3 124 aa11.05□□□□□ -0.64
VARS-223ENST00000474643 C17orf112F2Z3M2 114 aa11.05□□□□□ -0.64
VARS-223ENST00000474643 RPL7P18124 248 aaKnown RBP11.05□□□□□ -0.64
VARS-223ENST00000474643 CXCL2P19875 107 aa11.05□□□□□ -0.64
VARS-223ENST00000474643 CD300CQ08708 224 aa11.05□□□□□ -0.64
VARS-223ENST00000474643 SAMD13Q5VXD3 122 aa11.05□□□□□ -0.64
VARS-223ENST00000474643 C10orf113Q5VZT2 155 aa11.05□□□□□ -0.64
VARS-223ENST00000474643 MIC13Q5XKP0 118 aa11.05□□□□□ -0.64
VARS-223ENST00000474643 LINC00305Q7Z4B0 112 aa11.05□□□□□ -0.64
VARS-223ENST00000474643 ZNF709Q8N972 641 aa11.05□□□□□ -0.64
VARS-223ENST00000474643 OR1L4Q8NGR5 311 aa11.05□□□□□ -0.64
VARS-223ENST00000474643 GNPNAT1Q96EK6 184 aaPredicted RBP11.05□□□□□ -0.64
VARS-223ENST00000474643 NPCDR1Q9BY65 106 aa11.05□□□□□ -0.64
VARS-223ENST00000474643 ELOA3CA0A087WX78 387 aaPredicted RBP11.04□□□□□ -0.64
VARS-223ENST00000474643 BCL2L11O43521 198 aa11.04□□□□□ -0.64
VARS-223ENST00000474643 B2MP61769 119 aa11.04□□□□□ -0.64
VARS-223ENST00000474643 PRR20EP86478 221 aa11.04□□□□□ -0.64
VARS-223ENST00000474643 PRR20CP86479 221 aa11.04□□□□□ -0.64
VARS-223ENST00000474643 PRR20DP86480 221 aa11.04□□□□□ -0.64
VARS-223ENST00000474643 PRR20BP86481 221 aa11.04□□□□□ -0.64
VARS-223ENST00000474643 PRR20AP86496 221 aa11.04□□□□□ -0.64
VARS-223ENST00000474643 OPCMLQ14982 345 aa11.04□□□□□ -0.64
VARS-223ENST00000474643 LGALSLQ3ZCW2 172 aaPredicted RBP11.04□□□□□ -0.64
VARS-223ENST00000474643 TMUB2Q71RG4 321 aa11.04□□□□□ -0.64
VARS-223ENST00000474643 LRRC20Q8TCA0 184 aa11.04□□□□□ -0.64
VARS-223ENST00000474643 C2CD4CQ8TF44 421 aa11.04□□□□□ -0.64
VARS-223ENST00000474643 PFDN5Q99471 154 aa11.04□□□□□ -0.64
VARS-223ENST00000474643 PSMG3Q9BT73 122 aaPredicted RBP11.04□□□□□ -0.64
VARS-223ENST00000474643 WFDC1Q9HC57 220 aa11.04□□□□□ -0.64
VARS-223ENST00000474643 SEPSECSQ9HD40 501 aaKnown RBP11.04□□□□□ -0.64
VARS-223ENST00000474643 PSMB3P49720 205 aa11.03□□□□□ -0.64
VARS-223ENST00000474643 SERF2P84101 59 aa11.03□□□□□ -0.64
VARS-223ENST00000474643 PATE2Q6UY27 113 aa11.03□□□□□ -0.64
VARS-223ENST00000474643 TRPT1Q86TN4 253 aaKnown RBP11.03□□□□□ -0.64
VARS-223ENST00000474643 C9orf62Q8N4C0 152 aa11.03□□□□□ -0.64
VARS-223ENST00000474643 OR2G3Q8NGZ4 309 aa11.03□□□□□ -0.64
VARS-223ENST00000474643 SMIM3Q9BZL3 60 aa11.03□□□□□ -0.64
VARS-223ENST00000474643 DNAJC4Q9NNZ3 241 aa11.03□□□□□ -0.64
VARS-223ENST00000474643 CYTL1Q9NRR1 136 aa11.03□□□□□ -0.64
VARS-223ENST00000474643 SLC39A9Q9NUM3 307 aa11.03□□□□□ -0.64
VARS-223ENST00000474643 PXMP4Q9Y6I8 212 aa11.03□□□□□ -0.64
VARS-223ENST00000474643 HYDINQ4G0P3 5121 aa11.03□□□□□ -0.64
VARS-223ENST00000474643 ISLRO14498 428 aa11.02□□□□□ -0.65
VARS-223ENST00000474643 MIFP14174 115 aa11.02□□□□□ -0.65
VARS-223ENST00000474643 STOML3Q8TAV4 291 aa11.02□□□□□ -0.65
VARS-223ENST00000474643 C1QTNF4Q9BXJ3 329 aa11.02□□□□□ -0.65
VARS-223ENST00000474643 IGHV4-28A0A0C4DH34 117 aa11.01□□□□□ -0.65
VARS-223ENST00000474643 IGLL5B9A064 214 aa11.01□□□□□ -0.65
VARS-223ENST00000474643 C11orf94C9JXX5 98 aa11.01□□□□□ -0.65
VARS-223ENST00000474643 RPL7L1Q6DKI1 246 aaKnown RBP11.01□□□□□ -0.65
VARS-223ENST00000474643 EBLN2Q6P2I7 272 aa11.01□□□□□ -0.65
VARS-223ENST00000474643 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa11.01□□□□□ -0.65
VARS-223ENST00000474643 SLC51BQ86UW2 128 aa11.01□□□□□ -0.65
VARS-223ENST00000474643 BPIFA4PQ86YQ2 179 aa11.01□□□□□ -0.65
VARS-223ENST00000474643 TMEM37Q8WXS4 190 aa11.01□□□□□ -0.65
VARS-223ENST00000474643 RPRMQ9NS64 109 aa11.01□□□□□ -0.65
VARS-223ENST00000474643 CLEC5AQ9NY25 188 aa11.01□□□□□ -0.65
VARS-223ENST00000474643 EPPK1P58107 5090 aaKnown RBP11.01□□□□□ -0.65
VARS-223ENST00000474643 MBP02144 154 aa11□□□□□ -0.65
VARS-223ENST00000474643 LGALS9CQ6DKI2 356 aa11□□□□□ -0.65
VARS-223ENST00000474643 EIF5AL1Q6IS14 154 aaKnown RBP11□□□□□ -0.65
VARS-223ENST00000474643 SOCS3O14543 225 aa10.99□□□□□ -0.65
VARS-223ENST00000474643 IGKV3-20P01619 116 aa10.99□□□□□ -0.65
VARS-223ENST00000474643 SEC11BP0C7V7 166 aa10.99□□□□□ -0.65
VARS-223ENST00000474643 TPT1P13693 172 aaKnown RBP10.99□□□□□ -0.65
VARS-223ENST00000474643 ATP6V0CP27449 155 aa10.99□□□□□ -0.65
VARS-223ENST00000474643 TCTAP57738 103 aa10.99□□□□□ -0.65
VARS-223ENST00000474643 BAP18Q8IXM2 172 aa10.99□□□□□ -0.65
VARS-223ENST00000474643 Q8NAQ8 132 aa10.99□□□□□ -0.65
VARS-223ENST00000474643 OR4B1Q8NGF8 309 aa10.99□□□□□ -0.65
VARS-223ENST00000474643 ZNF471Q9BX82 626 aaPredicted RBP10.99□□□□□ -0.65
VARS-223ENST00000474643 XCL2Q9UBD3 114 aa10.99□□□□□ -0.65
VARS-223ENST00000474643 SNRPCP09234 159 aaKnown RBP10.98□□□□□ -0.65
VARS-223ENST00000474643 HLA-DMBP28068 263 aa10.98□□□□□ -0.65
VARS-223ENST00000474643 DEFB1P60022 68 aa10.98□□□□□ -0.65
VARS-223ENST00000474643 IGFL4Q6B9Z1 124 aa10.98□□□□□ -0.65
VARS-223ENST00000474643 FOXI2Q6ZQN5 318 aa10.98□□□□□ -0.65
VARS-223ENST00000474643 RPP25LQ8N5L8 163 aaKnown RBP10.98□□□□□ -0.65
VARS-223ENST00000474643 ZNF738Q8NE65 137 aa10.98□□□□□ -0.65
VARS-223ENST00000474643 PHYHIPLQ96FC7 376 aa10.98□□□□□ -0.65
VARS-223ENST00000474643 HRH4Q9H3N8 390 aa10.98□□□□□ -0.65
VARS-223ENST00000474643 SAV1Q9H4B6 383 aaPredicted RBP10.98□□□□□ -0.65
VARS-223ENST00000474643 A0A087X0K7 114 aa10.97□□□□□ -0.65
VARS-223ENST00000474643 TRAV10A0A0B4J240 114 aa10.97□□□□□ -0.65
VARS-223ENST00000474643 TRAV5A0A0B4J249 113 aa10.97□□□□□ -0.65
VARS-223ENST00000474643 UMAD1C9J7I0 102 aa10.97□□□□□ -0.65
VARS-223ENST00000474643 H3BMM0 161 aa10.97□□□□□ -0.65
VARS-223ENST00000474643 HLA-DRB4P13762 266 aa10.97□□□□□ -0.65
VARS-223ENST00000474643 M6PRP20645 277 aa10.97□□□□□ -0.65
VARS-223ENST00000474643 FAM78BQ5VT40 261 aa10.97□□□□□ -0.65
VARS-223ENST00000474643 MORN5Q5VZ52 161 aa10.97□□□□□ -0.65
VARS-223ENST00000474643 LCN15Q6UWW0 184 aa10.97□□□□□ -0.65
VARS-223ENST00000474643 RNF182Q8N6D2 247 aa10.97□□□□□ -0.65
VARS-223ENST00000474643 HSD17B11Q8NBQ5 300 aa10.97□□□□□ -0.65
VARS-223ENST00000474643 HLA-DRB4X5D2U9 266 aa10.97□□□□□ -0.65
VARS-223ENST00000474643 IGHV3OR16-12A0A075B7B8 117 aa10.96□□□□□ -0.65
VARS-223ENST00000474643 ZNF705EA8MWA4 302 aaPredicted RBP10.96□□□□□ -0.65
VARS-223ENST00000474643 F6UB75 175 aa10.96□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 118.7 ms