RNA–Protein interactions for RNA: ENST00000463487.1

COL9A3-204, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 760 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-204ENST00000463487 KHDC3LQ587J8 217 aa14.63□□□□□ -0.07
COL9A3-204ENST00000463487 FOXI2Q6ZQN5 318 aa14.63□□□□□ -0.07
COL9A3-204ENST00000463487 OR11H4Q8NGC9 324 aa14.63□□□□□ -0.07
COL9A3-204ENST00000463487 TM2D3Q9BRN9 247 aa14.63□□□□□ -0.07
COL9A3-204ENST00000463487 PRKDCP78527 4128 aaKnown RBP14.63□□□□□ -0.07
COL9A3-204ENST00000463487 KNCNA6PVL3 124 aa14.62□□□□□ -0.07
COL9A3-204ENST00000463487 OR7C2O60412 319 aa14.62□□□□□ -0.07
COL9A3-204ENST00000463487 IGLC2P0DOY2 106 aa14.62□□□□□ -0.07
COL9A3-204ENST00000463487 HIST1H1EP10412 219 aaKnown RBP14.62□□□□□ -0.07
COL9A3-204ENST00000463487 SPP1P10451 314 aa14.62□□□□□ -0.07
COL9A3-204ENST00000463487 TMEM41BQ5BJD5 291 aa14.62□□□□□ -0.07
COL9A3-204ENST00000463487 MORN3Q6PF18 240 aaPredicted RBP14.62□□□□□ -0.07
COL9A3-204ENST00000463487 MIR17HGQ75NE6 70 aa14.62□□□□□ -0.07
COL9A3-204ENST00000463487 ZNF738Q8NE65 137 aa14.62□□□□□ -0.07
COL9A3-204ENST00000463487 OR10G4Q8NGN3 311 aa14.62□□□□□ -0.07
COL9A3-204ENST00000463487 OR10G9Q8NGN4 311 aa14.62□□□□□ -0.07
COL9A3-204ENST00000463487 OR10G7Q8NGN6 311 aa14.62□□□□□ -0.07
COL9A3-204ENST00000463487 SLC25A2Q9BXI2 301 aa14.62□□□□□ -0.07
COL9A3-204ENST00000463487 CSTL1Q9H114 145 aa14.62□□□□□ -0.07
COL9A3-204ENST00000463487 SAV1Q9H4B6 383 aaPredicted RBP14.62□□□□□ -0.07
COL9A3-204ENST00000463487 ZNF253O75346 499 aa14.61□□□□□ -0.07
COL9A3-204ENST00000463487 C1QBP02746 253 aa14.61□□□□□ -0.07
COL9A3-204ENST00000463487 PDE6HQ13956 83 aa14.61□□□□□ -0.07
COL9A3-204ENST00000463487 TRPT1Q86TN4 253 aaKnown RBP14.61□□□□□ -0.07
COL9A3-204ENST00000463487 HYLS1Q96M11 299 aa14.61□□□□□ -0.07
COL9A3-204ENST00000463487 PAXXQ9BUH6 204 aa14.61□□□□□ -0.07
COL9A3-204ENST00000463487 OR51M1Q9H341 326 aa14.61□□□□□ -0.07
COL9A3-204ENST00000463487 ZNF331Q9NQX6 463 aaPredicted RBP14.61□□□□□ -0.07
COL9A3-204ENST00000463487 HLA-DRB4P13762 266 aa14.6□□□□□ -0.07
COL9A3-204ENST00000463487 PSG9Q00887 426 aa14.6□□□□□ -0.07
COL9A3-204ENST00000463487 Q6ZWC4 215 aa14.6□□□□□ -0.07
COL9A3-204ENST00000463487 C17orf77Q96MU5 243 aa14.6□□□□□ -0.07
COL9A3-204ENST00000463487 U3KQK5 164 aa14.6□□□□□ -0.07
COL9A3-204ENST00000463487 HLA-DRB4X5D2U9 266 aa14.6□□□□□ -0.07
COL9A3-204ENST00000463487 H3BQ15 152 aa14.59□□□□□ -0.07
COL9A3-204ENST00000463487 BCL2L11O43521 198 aa14.59□□□□□ -0.07
COL9A3-204ENST00000463487 CDC34P49427 236 aaPredicted RBP14.59□□□□□ -0.07
COL9A3-204ENST00000463487 RAB2AP61019 212 aa14.59□□□□□ -0.07
COL9A3-204ENST00000463487 PSG3Q16557 428 aa14.59□□□□□ -0.07
COL9A3-204ENST00000463487 FAM122CQ6P4D5 195 aa14.59□□□□□ -0.07
COL9A3-204ENST00000463487 PQLC2Q6ZP29 291 aa14.59□□□□□ -0.07
COL9A3-204ENST00000463487 FAM167A-AS1Q96KT0 104 aa14.59□□□□□ -0.07
COL9A3-204ENST00000463487 ZNF471Q9BX82 626 aaPredicted RBP14.59□□□□□ -0.07
COL9A3-204ENST00000463487 SH3BGRL3Q9H299 93 aa14.59□□□□□ -0.07
COL9A3-204ENST00000463487 AAMDCQ9H7C9 122 aa14.59□□□□□ -0.07
COL9A3-204ENST00000463487 TRBV19A0A075B6N1 114 aa14.58□□□□□ -0.08
COL9A3-204ENST00000463487 TRAV8-2A0A0B4J237 113 aa14.58□□□□□ -0.08
COL9A3-204ENST00000463487 H3BMM0 161 aa14.58□□□□□ -0.08
COL9A3-204ENST00000463487 CA1P00915 261 aaPredicted RBP14.58□□□□□ -0.08
COL9A3-204ENST00000463487 SNRPCP09234 159 aaKnown RBP14.58□□□□□ -0.08
COL9A3-204ENST00000463487 PYYP10082 97 aa14.58□□□□□ -0.08
COL9A3-204ENST00000463487 C4BPBP20851 252 aa14.58□□□□□ -0.08
COL9A3-204ENST00000463487 UBE2L3P68036 154 aaKnown RBP14.58□□□□□ -0.08
COL9A3-204ENST00000463487 AKR1C8PQ5T2L2 129 aa14.58□□□□□ -0.08
COL9A3-204ENST00000463487 RNF182Q8N6D2 247 aa14.58□□□□□ -0.08
COL9A3-204ENST00000463487 RNF141Q8WVD5 230 aa14.58□□□□□ -0.08
COL9A3-204ENST00000463487 RCHY1Q96PM5 261 aa14.58□□□□□ -0.08
COL9A3-204ENST00000463487 ZNF586Q9NXT0 402 aa14.58□□□□□ -0.08
COL9A3-204ENST00000463487 TP53TG1Q9Y2A0 90 aa14.58□□□□□ -0.08
COL9A3-204ENST00000463487 RFNGQ9Y644 331 aa14.58□□□□□ -0.08
COL9A3-204ENST00000463487 A0A0J9YX75 114 aa14.57□□□□□ -0.08
COL9A3-204ENST00000463487 DUSP14O95147 198 aaKnown RBP14.57□□□□□ -0.08
COL9A3-204ENST00000463487 NBEAP1P0C6P0 100 aa14.57□□□□□ -0.08
COL9A3-204ENST00000463487 IGFL4Q6B9Z1 124 aa14.57□□□□□ -0.08
COL9A3-204ENST00000463487 TMUB2Q71RG4 321 aa14.57□□□□□ -0.08
COL9A3-204ENST00000463487 OR4B1Q8NGF8 309 aa14.57□□□□□ -0.08
COL9A3-204ENST00000463487 BLNKQ8WV28 456 aa14.57□□□□□ -0.08
COL9A3-204ENST00000463487 SAT2Q96F10 170 aaPredicted RBP14.57□□□□□ -0.08
COL9A3-204ENST00000463487 C20orf173Q96LM9 149 aa14.57□□□□□ -0.08
COL9A3-204ENST00000463487 CLUHP3Q96NS8 147 aa14.57□□□□□ -0.08
COL9A3-204ENST00000463487 C1QTNF4Q9BXJ3 329 aa14.57□□□□□ -0.08
COL9A3-204ENST00000463487 ACTR3CQ9C0K3 210 aaPredicted RBP14.57□□□□□ -0.08
COL9A3-204ENST00000463487 CYTL1Q9NRR1 136 aa14.57□□□□□ -0.08
COL9A3-204ENST00000463487 PRELID1Q9Y255 219 aa14.57□□□□□ -0.08
COL9A3-204ENST00000463487 H3BTX0 84 aa14.56□□□□□ -0.08
COL9A3-204ENST00000463487 OR10J4P0C629 311 aa14.56□□□□□ -0.08
COL9A3-204ENST00000463487 ZFP69Q49AA0 526 aa14.56□□□□□ -0.08
COL9A3-204ENST00000463487 RPUSD4Q96CM3 377 aaKnown RBP14.56□□□□□ -0.08
COL9A3-204ENST00000463487 SLC17A3O00476 420 aa14.55□□□□□ -0.08
COL9A3-204ENST00000463487 TPT1P13693 172 aaKnown RBP14.55□□□□□ -0.08
COL9A3-204ENST00000463487 DEFB135Q30KP9 77 aa14.55□□□□□ -0.08
COL9A3-204ENST00000463487 MRPL53Q96EL3 112 aaKnown RBP14.55□□□□□ -0.08
COL9A3-204ENST00000463487 A0A1B0GVG6 124 aa14.54□□□□□ -0.08
COL9A3-204ENST00000463487 SPRY2O43597 315 aa14.54□□□□□ -0.08
COL9A3-204ENST00000463487 IGKV3-20P01619 116 aa14.54□□□□□ -0.08
COL9A3-204ENST00000463487 GDF5OSQ5U4N7 250 aa14.54□□□□□ -0.08
COL9A3-204ENST00000463487 RPP25LQ8N5L8 163 aaKnown RBP14.54□□□□□ -0.08
COL9A3-204ENST00000463487 OR10J6PQ8NGY7 276 aa14.54□□□□□ -0.08
COL9A3-204ENST00000463487 RAB24Q969Q5 203 aa14.54□□□□□ -0.08
COL9A3-204ENST00000463487 FXYD5Q96DB9 178 aa14.54□□□□□ -0.08
COL9A3-204ENST00000463487 PPP1R14DQ9NXH3 145 aa14.54□□□□□ -0.08
COL9A3-204ENST00000463487 F6UB75 175 aa14.53□□□□□ -0.08
COL9A3-204ENST00000463487 SEC11BP0C7V7 166 aa14.53□□□□□ -0.08
COL9A3-204ENST00000463487 HLA-DMBP28068 263 aa14.53□□□□□ -0.08
COL9A3-204ENST00000463487 EIF5AL1Q6IS14 154 aaKnown RBP14.53□□□□□ -0.08
COL9A3-204ENST00000463487 LYPD1Q8N2G4 141 aa14.53□□□□□ -0.08
COL9A3-204ENST00000463487 OR8A1Q8NGG7 326 aa14.53□□□□□ -0.08
COL9A3-204ENST00000463487 UMAD1C9J7I0 102 aa14.52□□□□□ -0.09
COL9A3-204ENST00000463487 STAG3L2P0CL84 134 aa14.52□□□□□ -0.09
COL9A3-204ENST00000463487 STAG3L3P0CL85 134 aa14.52□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 62.5 ms