RNA–Protein interactions for RNA: ENST00000405805.5

HMGB1-206, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 4,199 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-206ENST00000405805 FCGR2BP31994 310 aaPredicted RBP9.69□□□□□ -0.86
HMGB1-206ENST00000405805 Q0VG73 95 aa9.69□□□□□ -0.86
HMGB1-206ENST00000405805 DIAPH2-AS1Q14236 149 aa9.69□□□□□ -0.86
HMGB1-206ENST00000405805 MEIG1Q5JSS6 88 aa9.69□□□□□ -0.86
HMGB1-206ENST00000405805 MORN5Q5VZ52 161 aa9.69□□□□□ -0.86
HMGB1-206ENST00000405805 OR11H1Q8NG94 326 aa9.69□□□□□ -0.86
HMGB1-206ENST00000405805 OR11H2Q8NH07 326 aa9.69□□□□□ -0.86
HMGB1-206ENST00000405805 HCFC1P51610 2035 aa9.69□□□□□ -0.86
HMGB1-206ENST00000405805 RPL11P62913 178 aaKnown RBP9.69□□□□□ -0.86
HMGB1-206ENST00000405805 CX3CL1P78423 397 aa9.69□□□□□ -0.86
HMGB1-206ENST00000405805 C18orf32Q8TCD1 76 aa9.69□□□□□ -0.86
HMGB1-206ENST00000405805 NEUROG1Q92886 237 aa9.69□□□□□ -0.86
HMGB1-206ENST00000405805 NPFFR1Q9GZQ6 430 aa9.69□□□□□ -0.86
HMGB1-206ENST00000405805 MS4A6AQ9H2W1 248 aa9.69□□□□□ -0.86
HMGB1-206ENST00000405805 AREGP15514 252 aa9.69□□□□□ -0.86
HMGB1-206ENST00000405805 SSBP2P81877 361 aaPredicted RBP9.69□□□□□ -0.86
HMGB1-206ENST00000405805 CCDC144NLQ6NUI1 221 aa9.69□□□□□ -0.86
HMGB1-206ENST00000405805 GTSCR1Q86UQ5 136 aa9.69□□□□□ -0.86
HMGB1-206ENST00000405805 EXOC3-AS1Q8N2X6 119 aa9.69□□□□□ -0.86
HMGB1-206ENST00000405805 NUP35Q8NFH5 326 aa9.69□□□□□ -0.86
HMGB1-206ENST00000405805 OSTCQ9NRP0 149 aa9.69□□□□□ -0.86
HMGB1-206ENST00000405805 DSCAML1Q8TD84 2053 aa9.68□□□□□ -0.86
HMGB1-206ENST00000405805 C15orf65H3BRN8 121 aa9.68□□□□□ -0.86
HMGB1-206ENST00000405805 PRCDQ00LT1 54 aa9.68□□□□□ -0.86
HMGB1-206ENST00000405805 IGFBPL1Q8WX77 278 aa9.68□□□□□ -0.86
HMGB1-206ENST00000405805 RAB1CQ92928 201 aa9.68□□□□□ -0.86
HMGB1-206ENST00000405805 V9GYV3 84 aa9.68□□□□□ -0.86
HMGB1-206ENST00000405805 PSMB11A5LHX3 300 aa9.68□□□□□ -0.86
HMGB1-206ENST00000405805 C16orf97H3BN30 126 aa9.68□□□□□ -0.86
HMGB1-206ENST00000405805 TWIST1Q15672 202 aa9.68□□□□□ -0.86
HMGB1-206ENST00000405805 C2orf83Q53S99 150 aa9.68□□□□□ -0.86
HMGB1-206ENST00000405805 CIARTQ8N365 385 aaPredicted RBP9.68□□□□□ -0.86
HMGB1-206ENST00000405805 HIGD1AQ9Y241 93 aa9.68□□□□□ -0.86
HMGB1-206ENST00000405805 ANKRD11Q6UB99 2663 aaPredicted RBP9.68□□□□□ -0.86
HMGB1-206ENST00000405805 TMEM262E9PQX1 116 aa9.68□□□□□ -0.86
HMGB1-206ENST00000405805 NDUFA3O95167 84 aa9.68□□□□□ -0.86
HMGB1-206ENST00000405805 PLA2G2CQ5R387 149 aa9.68□□□□□ -0.86
HMGB1-206ENST00000405805 TRAV9-1A0A075B6T8 112 aa9.67□□□□□ -0.86
HMGB1-206ENST00000405805 IGHV1-46P01743 117 aa9.67□□□□□ -0.86
HMGB1-206ENST00000405805 IGHV3-49A0A0A0MS15 119 aa9.67□□□□□ -0.86
HMGB1-206ENST00000405805 VCX2Q9H322 139 aa9.67□□□□□ -0.86
HMGB1-206ENST00000405805 AAMDCQ9H7C9 122 aa9.67□□□□□ -0.86
HMGB1-206ENST00000405805 FAM208BQ5VWN6 2430 aa9.67□□□□□ -0.86
HMGB1-206ENST00000405805 CPAMD8Q8IZJ3 1885 aa9.67□□□□□ -0.86
HMGB1-206ENST00000405805 TRBV7-9A0A0J9YWB2 115 aa9.67□□□□□ -0.86
HMGB1-206ENST00000405805 PRSS29PA6NIE9 313 aa9.67□□□□□ -0.86
HMGB1-206ENST00000405805 IGKV3-15P01624 115 aa9.67□□□□□ -0.86
HMGB1-206ENST00000405805 IGHV4-39P01824 125 aa9.67□□□□□ -0.86
HMGB1-206ENST00000405805 WNT2P09544 360 aa9.67□□□□□ -0.86
HMGB1-206ENST00000405805 KLF17Q5JT82 389 aaPredicted RBP9.67□□□□□ -0.86
HMGB1-206ENST00000405805 TEX45Q8NA69 505 aa9.67□□□□□ -0.86
HMGB1-206ENST00000405805 NGBQ9NPG2 151 aa9.67□□□□□ -0.86
HMGB1-206ENST00000405805 SPTBN4Q9H254 2564 aa9.67□□□□□ -0.86
HMGB1-206ENST00000405805 C3orf36Q3SXR2 165 aa9.67□□□□□ -0.86
HMGB1-206ENST00000405805 PTPRQQ9UMZ3 2332 aa9.66□□□□□ -0.86
HMGB1-206ENST00000405805 C9orf153Q5TBE3 101 aa9.66□□□□□ -0.86
HMGB1-206ENST00000405805 SFXN3Q9BWM7 321 aa9.66□□□□□ -0.86
HMGB1-206ENST00000405805 MGAQ8IWI9 3026 aa9.66□□□□□ -0.86
HMGB1-206ENST00000405805 ZNF785A8K8V0 405 aa9.66□□□□□ -0.86
HMGB1-206ENST00000405805 HOXA3O43365 443 aaPredicted RBP9.66□□□□□ -0.86
HMGB1-206ENST00000405805 YPEL3P61236 119 aaPredicted RBP9.66□□□□□ -0.86
HMGB1-206ENST00000405805 EBLN2Q6P2I7 272 aa9.66□□□□□ -0.86
HMGB1-206ENST00000405805 SPRY4Q9C004 299 aa9.66□□□□□ -0.86
HMGB1-206ENST00000405805 MAP1LC3AQ9H492 121 aa9.66□□□□□ -0.86
HMGB1-206ENST00000405805 EDA2RQ9HAV5 297 aa9.66□□□□□ -0.86
HMGB1-206ENST00000405805 PTPN13Q12923 2485 aa9.66□□□□□ -0.86
HMGB1-206ENST00000405805 PDLIM4P50479 330 aa9.66□□□□□ -0.86
HMGB1-206ENST00000405805 SHISA2Q6UWI4 295 aa9.66□□□□□ -0.86
HMGB1-206ENST00000405805 CENPVQ7Z7K6 275 aaPredicted RBP9.66□□□□□ -0.86
HMGB1-206ENST00000405805 OR13C6PQ8NH95 151 aa9.66□□□□□ -0.86
HMGB1-206ENST00000405805 PRR7Q8TB68 274 aa9.66□□□□□ -0.86
HMGB1-206ENST00000405805 Q9H3A6 140 aa9.66□□□□□ -0.86
HMGB1-206ENST00000405805 CHD8Q9HCK8 2581 aa9.66□□□□□ -0.86
HMGB1-206ENST00000405805 RPUSD1Q9UJJ7 312 aaKnown RBP9.66□□□□□ -0.86
HMGB1-206ENST00000405805 EPDR1Q9UM22 224 aa9.66□□□□□ -0.86
HMGB1-206ENST00000405805 KIAA1549Q9HCM3 1950 aa9.65□□□□□ -0.86
HMGB1-206ENST00000405805 LOXL3P58215 753 aa9.65□□□□□ -0.86
HMGB1-206ENST00000405805 ZNF474Q6S9Z5 364 aaPredicted RBP9.65□□□□□ -0.86
HMGB1-206ENST00000405805 GRAMD2BQ96HH9 432 aa9.65□□□□□ -0.86
HMGB1-206ENST00000405805 GPR82Q96P67 336 aa9.65□□□□□ -0.86
HMGB1-206ENST00000405805 VGLL1Q99990 258 aa9.65□□□□□ -0.86
HMGB1-206ENST00000405805 TPSG1Q9NRR2 321 aa9.65□□□□□ -0.86
HMGB1-206ENST00000405805 FOXA2Q9Y261 457 aaPredicted RBP9.65□□□□□ -0.86
HMGB1-206ENST00000405805 IGHV3-66A0A0C4DH42 116 aa9.65□□□□□ -0.86
HMGB1-206ENST00000405805 C9JCJ5 164 aa9.65□□□□□ -0.86
HMGB1-206ENST00000405805 RNASE2P10153 161 aaKnown RBP9.65□□□□□ -0.86
HMGB1-206ENST00000405805 MSMPQ1L6U9 139 aa9.65□□□□□ -0.86
HMGB1-206ENST00000405805 OR9G4Q8NGQ1 327 aa9.65□□□□□ -0.86
HMGB1-206ENST00000405805 C1QTNF4Q9BXJ3 329 aa9.65□□□□□ -0.86
HMGB1-206ENST00000405805 ACACBO00763 2458 aa9.65□□□□□ -0.86
HMGB1-206ENST00000405805 IGKV1OR2-108A0A075B7D4 117 aa9.65□□□□□ -0.87
HMGB1-206ENST00000405805 SMIM17P0DL12 118 aa9.65□□□□□ -0.87
HMGB1-206ENST00000405805 PRELID3AQ96N28 172 aa9.65□□□□□ -0.87
HMGB1-206ENST00000405805 VKORC1Q9BQB6 163 aa9.65□□□□□ -0.87
HMGB1-206ENST00000405805 C1orf43Q9BWL3 253 aa9.65□□□□□ -0.87
HMGB1-206ENST00000405805 PGPEP1Q9NXJ5 209 aa9.65□□□□□ -0.87
HMGB1-206ENST00000405805 S100A4P26447 101 aaKnown RBP9.64□□□□□ -0.87
HMGB1-206ENST00000405805 BSPH1Q075Z2 132 aa9.64□□□□□ -0.87
HMGB1-206ENST00000405805 C17orf58Q2M2W7 97 aa9.64□□□□□ -0.87
HMGB1-206ENST00000405805 LYPD2Q6UXB3 125 aa9.64□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 85 ms