RNA–Protein interactions for RNA: ENST00000397053.6

UPF2-203, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 5 BASIC

Gene UPF2, Length 5,369 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-203ENST00000397053 LINC00114Q6XXX2 140 aa5.84□□□□□ -1.47
UPF2-203ENST00000397053 ZNRF2Q8NHG8 242 aa5.84□□□□□ -1.47
UPF2-203ENST00000397053 ANAPC13Q9BS18 74 aa5.84□□□□□ -1.47
UPF2-203ENST00000397053 FBLN5Q9UBX5 448 aa5.84□□□□□ -1.47
UPF2-203ENST00000397053 CD5LO43866 347 aa5.84□□□□□ -1.47
UPF2-203ENST00000397053 HSD52Q0P140 79 aa5.84□□□□□ -1.47
UPF2-203ENST00000397053 LYPD1Q8N2G4 141 aa5.84□□□□□ -1.47
UPF2-203ENST00000397053 TMEM158Q8WZ71 300 aa5.84□□□□□ -1.47
UPF2-203ENST00000397053 DOCK3Q8IZD9 2030 aa5.84□□□□□ -1.47
UPF2-203ENST00000397053 IGHG3P01860 377 aa5.84□□□□□ -1.47
UPF2-203ENST00000397053 NHLRC3Q5JS37 347 aa5.84□□□□□ -1.47
UPF2-203ENST00000397053 PKIGQ9Y2B9 76 aa5.84□□□□□ -1.47
UPF2-203ENST00000397053 IGKV1-12A0A0C4DH73 117 aa5.84□□□□□ -1.47
UPF2-203ENST00000397053 IGKV1D-12P01611 117 aa5.84□□□□□ -1.47
UPF2-203ENST00000397053 ADMP35318 185 aa5.84□□□□□ -1.47
UPF2-203ENST00000397053 CCL18P55774 89 aa5.84□□□□□ -1.47
UPF2-203ENST00000397053 C18orf12Q96KH6 178 aa5.84□□□□□ -1.47
UPF2-203ENST00000397053 MED13Q9UHV7 2174 aa5.84□□□□□ -1.47
UPF2-203ENST00000397053 TNRC6CQ9HCJ0 1690 aaKnown RBP5.84□□□□□ -1.48
UPF2-203ENST00000397053 A0A087WWC5 75 aa5.84□□□□□ -1.48
UPF2-203ENST00000397053 C4orf48Q5BLP8 95 aa5.84□□□□□ -1.48
UPF2-203ENST00000397053 GAGE2AQ6NT46 116 aa5.84□□□□□ -1.48
UPF2-203ENST00000397053 TET1Q8NFU7 2136 aa5.83□□□□□ -1.48
UPF2-203ENST00000397053 PKD1L3Q7Z443 1732 aa5.83□□□□□ -1.48
UPF2-203ENST00000397053 G3V318 75 aa5.83□□□□□ -1.48
UPF2-203ENST00000397053 RPP25LQ8N5L8 163 aaKnown RBP5.83□□□□□ -1.48
UPF2-203ENST00000397053 GNB1LQ9BYB4 327 aa5.83□□□□□ -1.48
UPF2-203ENST00000397053 KLK9Q9UKQ9 250 aa5.83□□□□□ -1.48
UPF2-203ENST00000397053 CRLF1O75462 422 aa5.83□□□□□ -1.48
UPF2-203ENST00000397053 HAMPP81172 84 aa5.83□□□□□ -1.48
UPF2-203ENST00000397053 ZC2HC1BQ5TFG8 222 aa5.83□□□□□ -1.48
UPF2-203ENST00000397053 C1orf43Q9BWL3 253 aa5.83□□□□□ -1.48
UPF2-203ENST00000397053 AKAP11Q9UKA4 1901 aa5.83□□□□□ -1.48
UPF2-203ENST00000397053 SCN7AQ01118 1682 aa5.83□□□□□ -1.48
UPF2-203ENST00000397053 THADAQ6YHU6 1953 aa5.83□□□□□ -1.48
UPF2-203ENST00000397053 PCP4P48539 62 aa5.83□□□□□ -1.48
UPF2-203ENST00000397053 BCL6BQ8N143 479 aaPredicted RBP5.83□□□□□ -1.48
UPF2-203ENST00000397053 NACAE9PAV3 2078 aa5.83□□□□□ -1.48
UPF2-203ENST00000397053 ALS2Q96Q42 1657 aa5.83□□□□□ -1.48
UPF2-203ENST00000397053 TRAV3A0A0B4J244 114 aa5.83□□□□□ -1.48
UPF2-203ENST00000397053 SHISA3A0PJX4 238 aa5.83□□□□□ -1.48
UPF2-203ENST00000397053 IGLV2-23P01705 113 aa5.83□□□□□ -1.48
UPF2-203ENST00000397053 SAMD5Q5TGI4 173 aa5.83□□□□□ -1.48
UPF2-203ENST00000397053 SPATA31B1PQ5VZV4 182 aa5.83□□□□□ -1.48
UPF2-203ENST00000397053 C1QL4Q86Z23 238 aa5.83□□□□□ -1.48
UPF2-203ENST00000397053 TMEM170AQ8WVE7 144 aa5.83□□□□□ -1.48
UPF2-203ENST00000397053 SCRT2Q9NQ03 307 aa5.83□□□□□ -1.48
UPF2-203ENST00000397053 POLR2AP24928 1970 aaKnown RBP5.82□□□□□ -1.48
UPF2-203ENST00000397053 OTOFQ9HC10 1997 aa5.82□□□□□ -1.48
UPF2-203ENST00000397053 IGHV1OR15-1A0A075B7D0 117 aa5.82□□□□□ -1.48
UPF2-203ENST00000397053 SOCS3O14543 225 aa5.82□□□□□ -1.48
UPF2-203ENST00000397053 ELANEP08246 267 aa5.82□□□□□ -1.48
UPF2-203ENST00000397053 PIFOQ8TCI5 191 aa5.82□□□□□ -1.48
UPF2-203ENST00000397053 A0A0J9YY99 117 aa5.82□□□□□ -1.48
UPF2-203ENST00000397053 DMRTC2Q8IXT2 367 aaPredicted RBP5.82□□□□□ -1.48
UPF2-203ENST00000397053 SRSF8Q9BRL6 282 aaKnown RBP5.82□□□□□ -1.48
UPF2-203ENST00000397053 AGMATQ9BSE5 352 aa5.82□□□□□ -1.48
UPF2-203ENST00000397053 ITGB4P16144 1822 aa5.82□□□□□ -1.48
UPF2-203ENST00000397053 IGHV2-70DA0A0C4DH43 119 aa5.82□□□□□ -1.48
UPF2-203ENST00000397053 hADV29S1A0JD25 119 aa5.82□□□□□ -1.48
UPF2-203ENST00000397053 EFNA2O43921 213 aa5.82□□□□□ -1.48
UPF2-203ENST00000397053 CFHR2P36980 270 aa5.82□□□□□ -1.48
UPF2-203ENST00000397053 ECM29Q5VYK3 1845 aa5.82□□□□□ -1.48
UPF2-203ENST00000397053 IGKV1D-17A0A075B6S4 117 aa5.82□□□□□ -1.48
UPF2-203ENST00000397053 CDKN1BP46527 198 aa5.82□□□□□ -1.48
UPF2-203ENST00000397053 C2CD3Q4AC94 2353 aa5.82□□□□□ -1.48
UPF2-203ENST00000397053 PRR31Q5SQ13 230 aa5.81□□□□□ -1.48
UPF2-203ENST00000397053 MRPL27Q9P0M9 148 aaKnown RBP5.81□□□□□ -1.48
UPF2-203ENST00000397053 IGKV1D-8A0A087WSZ0 117 aa5.81□□□□□ -1.48
UPF2-203ENST00000397053 RNF222A6NCQ9 220 aa5.81□□□□□ -1.48
UPF2-203ENST00000397053 NEGR1Q7Z3B1 354 aa5.81□□□□□ -1.48
UPF2-203ENST00000397053 RPRMLQ8N4K4 120 aa5.81□□□□□ -1.48
UPF2-203ENST00000397053 CARHSP1Q9Y2V2 147 aaKnown RBP5.81□□□□□ -1.48
UPF2-203ENST00000397053 IGHV3-38A0A0C4DH36 116 aa5.81□□□□□ -1.48
UPF2-203ENST00000397053 NDUFB8O95169 186 aa5.81□□□□□ -1.48
UPF2-203ENST00000397053 INAFM2P0DMQ5 153 aa5.81□□□□□ -1.48
UPF2-203ENST00000397053 PDE6HQ13956 83 aa5.81□□□□□ -1.48
UPF2-203ENST00000397053 TIMM17AQ99595 171 aa5.81□□□□□ -1.48
UPF2-203ENST00000397053 NDUFAF3Q9BU61 184 aa5.81□□□□□ -1.48
UPF2-203ENST00000397053 UBL5Q9BZL1 73 aa5.81□□□□□ -1.48
UPF2-203ENST00000397053 A0A1B0GUS0 222 aa5.81□□□□□ -1.48
UPF2-203ENST00000397053 AMN1Q8IY45 258 aa5.81□□□□□ -1.48
UPF2-203ENST00000397053 CHAC1Q9BUX1 264 aa5.81□□□□□ -1.48
UPF2-203ENST00000397053 TSSC4Q9Y5U2 329 aaPredicted RBP5.81□□□□□ -1.48
UPF2-203ENST00000397053 HGFACQ04756 655 aa5.8□□□□□ -1.48
UPF2-203ENST00000397053 CLPSL2Q6UWE3 100 aa5.8□□□□□ -1.48
UPF2-203ENST00000397053 SHANK2-AS3Q9BTD1 123 aa5.8□□□□□ -1.48
UPF2-203ENST00000397053 CHD8Q9HCK8 2581 aa5.8□□□□□ -1.48
UPF2-203ENST00000397053 SMKR1H3BMG3 65 aa5.8□□□□□ -1.48
UPF2-203ENST00000397053 IGKV1-39P01597 117 aa5.8□□□□□ -1.48
UPF2-203ENST00000397053 IGKV1D-39P04432 117 aa5.8□□□□□ -1.48
UPF2-203ENST00000397053 NAA38Q9BRA0 125 aaKnown RBP5.8□□□□□ -1.48
UPF2-203ENST00000397053 TRAV12-2A0A075B6T6 113 aa5.8□□□□□ -1.48
UPF2-203ENST00000397053 GUSBP1Q15486 140 aa5.8□□□□□ -1.48
UPF2-203ENST00000397053 ZNF503Q96F45 646 aa5.8□□□□□ -1.48
UPF2-203ENST00000397053 TP53TG1Q9Y2A0 90 aa5.8□□□□□ -1.48
UPF2-203ENST00000397053 LRP5O75197 1615 aa5.8□□□□□ -1.48
UPF2-203ENST00000397053 IGKV1-16P04430 117 aa5.8□□□□□ -1.48
UPF2-203ENST00000397053 PFN1P07737 140 aaKnown RBP5.8□□□□□ -1.48
UPF2-203ENST00000397053 VSIRQ9H7M9 311 aa5.8□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 48.1 ms