RNA–Protein interactions for RNA: ENST00000395653.9

CLN3-207, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,430 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-207ENST00000395653 TMEM14CQ9P0S9 112 aa15.87■□□□□ 0.13
CLN3-207ENST00000395653 FXYD6-FXYD2A0A087WZ82 144 aa15.86■□□□□ 0.13
CLN3-207ENST00000395653 G3V3Q6 166 aa15.86■□□□□ 0.13
CLN3-207ENST00000395653 GUK1Q16774 197 aa15.86■□□□□ 0.13
CLN3-207ENST00000395653 RNF182Q8N6D2 247 aa15.86■□□□□ 0.13
CLN3-207ENST00000395653 MRPL32Q9BYC8 188 aaKnown RBP15.86■□□□□ 0.13
CLN3-207ENST00000395653 ZNF331Q9NQX6 463 aaPredicted RBP15.86■□□□□ 0.13
CLN3-207ENST00000395653 TNFSF18Q9UNG2 199 aa15.86■□□□□ 0.13
CLN3-207ENST00000395653 F6UB75 175 aa15.85■□□□□ 0.13
CLN3-207ENST00000395653 MUC7Q8TAX7 377 aa15.85■□□□□ 0.13
CLN3-207ENST00000395653 C1QTNF4Q9BXJ3 329 aa15.85■□□□□ 0.13
CLN3-207ENST00000395653 RNF222A6NCQ9 220 aa15.85■□□□□ 0.13
CLN3-207ENST00000395653 H3BQ15 152 aa15.85■□□□□ 0.13
CLN3-207ENST00000395653 PSG3Q16557 428 aa15.85■□□□□ 0.13
CLN3-207ENST00000395653 FFAR4Q5NUL3 377 aa15.85■□□□□ 0.13
CLN3-207ENST00000395653 OR4B1Q8NGF8 309 aa15.85■□□□□ 0.13
CLN3-207ENST00000395653 SAT2Q96F10 170 aaPredicted RBP15.85■□□□□ 0.13
CLN3-207ENST00000395653 RARRES2Q99969 163 aa15.85■□□□□ 0.13
CLN3-207ENST00000395653 TIMM9Q9Y5J7 89 aa15.85■□□□□ 0.13
CLN3-207ENST00000395653 C3orf84H3BNL1 204 aa15.84■□□□□ 0.13
CLN3-207ENST00000395653 SLC17A3O00476 420 aa15.84■□□□□ 0.13
CLN3-207ENST00000395653 SNRPCP09234 159 aaKnown RBP15.84■□□□□ 0.13
CLN3-207ENST00000395653 ZNF738Q8NE65 137 aa15.84■□□□□ 0.13
CLN3-207ENST00000395653 SLC25A2Q9BXI2 301 aa15.84■□□□□ 0.13
CLN3-207ENST00000395653 CLEC5AQ9NY25 188 aa15.84■□□□□ 0.13
CLN3-207ENST00000395653 FUT9Q9Y231 359 aa15.84■□□□□ 0.13
CLN3-207ENST00000395653 DNAH7Q8WXX0 4024 aa15.83■□□□□ 0.13
CLN3-207ENST00000395653 A8MTW9 85 aa15.83■□□□□ 0.12
CLN3-207ENST00000395653 ZNF253O75346 499 aa15.83■□□□□ 0.12
CLN3-207ENST00000395653 IGKV3-20P01619 116 aa15.83■□□□□ 0.12
CLN3-207ENST00000395653 HLA-DMBP28068 263 aa15.83■□□□□ 0.12
CLN3-207ENST00000395653 MIR17HGQ75NE6 70 aa15.83■□□□□ 0.12
CLN3-207ENST00000395653 CSNK1G2-AS1Q8NCQ2 148 aa15.83■□□□□ 0.12
CLN3-207ENST00000395653 OR11H2Q8NH07 326 aa15.83■□□□□ 0.12
CLN3-207ENST00000395653 FAM167A-AS1Q96KT0 104 aa15.83■□□□□ 0.12
CLN3-207ENST00000395653 ZNF586Q9NXT0 402 aa15.83■□□□□ 0.12
CLN3-207ENST00000395653 H3BTX0 84 aa15.82■□□□□ 0.12
CLN3-207ENST00000395653 DUSP14O95147 198 aaKnown RBP15.82■□□□□ 0.12
CLN3-207ENST00000395653 HIST1H1EP10412 219 aaKnown RBP15.82■□□□□ 0.12
CLN3-207ENST00000395653 PSG9Q00887 426 aa15.81■□□□□ 0.12
CLN3-207ENST00000395653 XCL2Q9UBD3 114 aa15.81■□□□□ 0.12
CLN3-207ENST00000395653 TRBV19A0A075B6N1 114 aa15.8■□□□□ 0.12
CLN3-207ENST00000395653 A0A0J9YWU9 116 aa15.8■□□□□ 0.12
CLN3-207ENST00000395653 PYYP10082 97 aa15.8■□□□□ 0.12
CLN3-207ENST00000395653 CNN1P51911 297 aaKnown RBP15.8■□□□□ 0.12
CLN3-207ENST00000395653 RHOBP62745 196 aa15.8■□□□□ 0.12
CLN3-207ENST00000395653 PDE6HQ13956 83 aa15.8■□□□□ 0.12
CLN3-207ENST00000395653 OR8A1Q8NGG7 326 aa15.8■□□□□ 0.12
CLN3-207ENST00000395653 RPUSD4Q96CM3 377 aaKnown RBP15.8■□□□□ 0.12
CLN3-207ENST00000395653 RFNGQ9Y644 331 aa15.8■□□□□ 0.12
CLN3-207ENST00000395653 ZNF705EA8MWA4 302 aaPredicted RBP15.79■□□□□ 0.12
CLN3-207ENST00000395653 ACOT6Q3I5F7 207 aaPredicted RBP15.79■□□□□ 0.12
CLN3-207ENST00000395653 AMTNQ6UX39 209 aa15.79■□□□□ 0.12
CLN3-207ENST00000395653 HSD17B11Q8NBQ5 300 aa15.79■□□□□ 0.12
CLN3-207ENST00000395653 IL17DQ8TAD2 202 aa15.79■□□□□ 0.12
CLN3-207ENST00000395653 PSMG3Q9BT73 122 aaPredicted RBP15.79■□□□□ 0.12
CLN3-207ENST00000395653 SLC35B3Q9H1N7 401 aa15.79■□□□□ 0.12
CLN3-207ENST00000395653 OR51M1Q9H341 326 aa15.79■□□□□ 0.12
CLN3-207ENST00000395653 ARPC5O15511 151 aa15.78■□□□□ 0.12
CLN3-207ENST00000395653 M6PRP20645 277 aa15.78■□□□□ 0.12
CLN3-207ENST00000395653 OR2G3Q8NGZ4 309 aa15.78■□□□□ 0.12
CLN3-207ENST00000395653 MFFQ9GZY8 342 aa15.78■□□□□ 0.12
CLN3-207ENST00000395653 SMLR1H3BR10 107 aa15.77■□□□□ 0.12
CLN3-207ENST00000395653 ZNF705DP0CH99 300 aaPredicted RBP15.77■□□□□ 0.12
CLN3-207ENST00000395653 ZNF705BP0CI00 300 aaPredicted RBP15.77■□□□□ 0.12
CLN3-207ENST00000395653 ATP6V0CP27449 155 aa15.77■□□□□ 0.12
CLN3-207ENST00000395653 FXYD7P58549 80 aa15.77■□□□□ 0.12
CLN3-207ENST00000395653 HIST1H1AQ02539 215 aaPredicted RBP15.77■□□□□ 0.12
CLN3-207ENST00000395653 PAXXQ9BUH6 204 aa15.77■□□□□ 0.12
CLN3-207ENST00000395653 C11orf68Q9H3H3 251 aaKnown RBP15.77■□□□□ 0.12
CLN3-207ENST00000395653 NDUFB4O95168 129 aa15.77■□□□□ 0.11
CLN3-207ENST00000395653 TAS2R45P59539 299 aa15.77■□□□□ 0.11
CLN3-207ENST00000395653 KHDC3LQ587J8 217 aa15.77■□□□□ 0.11
CLN3-207ENST00000395653 BORCS7-ASMTA0A0B4J1R7 106 aa15.76■□□□□ 0.11
CLN3-207ENST00000395653 ZNF705FA8MVS1 300 aaPredicted RBP15.76■□□□□ 0.11
CLN3-207ENST00000395653 TAAR5O14804 337 aa15.76■□□□□ 0.11
CLN3-207ENST00000395653 OR7C2O60412 319 aa15.76■□□□□ 0.11
CLN3-207ENST00000395653 NBEAP1P0C6P0 100 aa15.76■□□□□ 0.11
CLN3-207ENST00000395653 MIFP14174 115 aa15.76■□□□□ 0.11
CLN3-207ENST00000395653 RPL7L1Q6DKI1 246 aaKnown RBP15.76■□□□□ 0.11
CLN3-207ENST00000395653 Q6ZNX1 250 aa15.76■□□□□ 0.11
CLN3-207ENST00000395653 BLNKQ8WV28 456 aa15.76■□□□□ 0.11
CLN3-207ENST00000395653 RNF141Q8WVD5 230 aa15.76■□□□□ 0.11
CLN3-207ENST00000395653 FXYD5Q96DB9 178 aa15.76■□□□□ 0.11
CLN3-207ENST00000395653 MRPL53Q96EL3 112 aaKnown RBP15.76■□□□□ 0.11
CLN3-207ENST00000395653 X6R8D5 127 aa15.76■□□□□ 0.11
CLN3-207ENST00000395653 AMBPP02760 352 aa15.75■□□□□ 0.11
CLN3-207ENST00000395653 RAB2AP61019 212 aa15.75■□□□□ 0.11
CLN3-207ENST00000395653 SERF2P84101 59 aa15.75■□□□□ 0.11
CLN3-207ENST00000395653 CASC10Q5T4H9 136 aa15.75■□□□□ 0.11
CLN3-207ENST00000395653 Q8NAQ8 132 aa15.75■□□□□ 0.11
CLN3-207ENST00000395653 GNPNAT1Q96EK6 184 aaPredicted RBP15.75■□□□□ 0.11
CLN3-207ENST00000395653 ZNF503Q96F45 646 aa15.75■□□□□ 0.11
CLN3-207ENST00000395653 PRELID1Q9Y255 219 aa15.75■□□□□ 0.11
CLN3-207ENST00000395653 OR10J4P0C629 311 aa15.74■□□□□ 0.11
CLN3-207ENST00000395653 ZNF345Q14585 488 aa15.74■□□□□ 0.11
CLN3-207ENST00000395653 ZNF705AQ6ZN79 300 aaPredicted RBP15.74■□□□□ 0.11
CLN3-207ENST00000395653 OR10G4Q8NGN3 311 aa15.74■□□□□ 0.11
CLN3-207ENST00000395653 OR10G9Q8NGN4 311 aa15.74■□□□□ 0.11
CLN3-207ENST00000395653 OR10G7Q8NGN6 311 aa15.74■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 45.9 ms