RNA–Protein interactions for RNA: ENST00000381753.8

LIMCH1-202, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,705 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-202ENST00000381753 C1QCP02747 245 aa7.36□□□□□ -1.23
LIMCH1-202ENST00000381753 SNRPEP62304 92 aaKnown RBP7.36□□□□□ -1.23
LIMCH1-202ENST00000381753 LINC01590Q5TEZ4 76 aa7.36□□□□□ -1.23
LIMCH1-202ENST00000381753 DEFB125Q8N687 156 aa7.36□□□□□ -1.23
LIMCH1-202ENST00000381753 GGACTQ9BVM4 153 aa7.36□□□□□ -1.23
LIMCH1-202ENST00000381753 NDUFB4O95168 129 aa7.36□□□□□ -1.23
LIMCH1-202ENST00000381753 APOHP02749 345 aaPredicted RBP7.36□□□□□ -1.23
LIMCH1-202ENST00000381753 VOPP1Q96AW1 172 aa7.36□□□□□ -1.23
LIMCH1-202ENST00000381753 SRSF8Q9BRL6 282 aaKnown RBP7.36□□□□□ -1.23
LIMCH1-202ENST00000381753 RHODO00212 210 aa7.36□□□□□ -1.23
LIMCH1-202ENST00000381753 OR10AG1Q8NH19 301 aa7.36□□□□□ -1.23
LIMCH1-202ENST00000381753 TRAV12-2A0A075B6T6 113 aa7.35□□□□□ -1.23
LIMCH1-202ENST00000381753 IGHV4OR15-8A0A075B7B6 117 aa7.35□□□□□ -1.23
LIMCH1-202ENST00000381753 A0A087WW49 117 aa7.35□□□□□ -1.23
LIMCH1-202ENST00000381753 TRBV5-3A0A0A0MS03 114 aa7.35□□□□□ -1.23
LIMCH1-202ENST00000381753 TRBV6-7A0A0A0MS04 114 aa7.35□□□□□ -1.23
LIMCH1-202ENST00000381753 ATP6V0CP27449 155 aa7.35□□□□□ -1.23
LIMCH1-202ENST00000381753 TEX36Q5VZQ5 186 aa7.35□□□□□ -1.23
LIMCH1-202ENST00000381753 RSPO3Q9BXY4 272 aaPredicted RBP7.35□□□□□ -1.23
LIMCH1-202ENST00000381753 WISP3O95389 354 aaPredicted RBP7.35□□□□□ -1.23
LIMCH1-202ENST00000381753 LEPROTL1O95214 131 aa7.35□□□□□ -1.23
LIMCH1-202ENST00000381753 SPNP16150 400 aa7.35□□□□□ -1.23
LIMCH1-202ENST00000381753 GCHFRP30047 84 aa7.35□□□□□ -1.23
LIMCH1-202ENST00000381753 CD300CQ08708 224 aa7.35□□□□□ -1.23
LIMCH1-202ENST00000381753 RHOHQ15669 191 aa7.35□□□□□ -1.23
LIMCH1-202ENST00000381753 IGFL4Q6B9Z1 124 aa7.35□□□□□ -1.23
LIMCH1-202ENST00000381753 C16orf74Q96GX8 76 aa7.35□□□□□ -1.23
LIMCH1-202ENST00000381753 HEATR5BQ9P2D3 2071 aa7.35□□□□□ -1.23
LIMCH1-202ENST00000381753 P0DMU3 169 aa7.34□□□□□ -1.23
LIMCH1-202ENST00000381753 FAM231AP0DMU4 169 aa7.34□□□□□ -1.23
LIMCH1-202ENST00000381753 FAM231CP0DMU5 169 aa7.34□□□□□ -1.23
LIMCH1-202ENST00000381753 Q6YL49 198 aa7.34□□□□□ -1.23
LIMCH1-202ENST00000381753 MBD6Q96DN6 1003 aa7.34□□□□□ -1.23
LIMCH1-202ENST00000381753 PKDREJQ9NTG1 2253 aa7.34□□□□□ -1.23
LIMCH1-202ENST00000381753 SIPA1L1O43166 1804 aa7.34□□□□□ -1.23
LIMCH1-202ENST00000381753 ARHGEF17Q96PE2 2063 aaPredicted RBP7.34□□□□□ -1.23
LIMCH1-202ENST00000381753 A0A0U1RRA0 63 aa7.34□□□□□ -1.23
LIMCH1-202ENST00000381753 PMS2P5A8MQ11 134 aa7.34□□□□□ -1.23
LIMCH1-202ENST00000381753 STAG3L3P0CL85 134 aa7.34□□□□□ -1.23
LIMCH1-202ENST00000381753 OXLD1Q5BKU9 147 aa7.34□□□□□ -1.23
LIMCH1-202ENST00000381753 BBC3Q96PG8 261 aaPredicted RBP7.34□□□□□ -1.23
LIMCH1-202ENST00000381753 TM2D1Q9BX74 207 aa7.34□□□□□ -1.23
LIMCH1-202ENST00000381753 ANAPC10Q9UM13 185 aa7.34□□□□□ -1.23
LIMCH1-202ENST00000381753 ACACBO00763 2458 aa7.34□□□□□ -1.23
LIMCH1-202ENST00000381753 H3BQ15 152 aa7.34□□□□□ -1.23
LIMCH1-202ENST00000381753 BCL2P10415 239 aa7.34□□□□□ -1.23
LIMCH1-202ENST00000381753 UBE2AP49459 152 aa7.34□□□□□ -1.23
LIMCH1-202ENST00000381753 KLF5Q13887 457 aaPredicted RBP7.34□□□□□ -1.23
LIMCH1-202ENST00000381753 CD300EQ496F6 205 aaPredicted RBP7.34□□□□□ -1.23
LIMCH1-202ENST00000381753 TOMM40O96008 361 aa7.34□□□□□ -1.23
LIMCH1-202ENST00000381753 RPP25LQ8N5L8 163 aaKnown RBP7.34□□□□□ -1.23
LIMCH1-202ENST00000381753 FAM3BP58499 235 aaPredicted RBP7.34□□□□□ -1.24
LIMCH1-202ENST00000381753 MPDZO75970 2070 aa7.33□□□□□ -1.24
LIMCH1-202ENST00000381753 C5orf24Q7Z6I8 188 aa7.33□□□□□ -1.24
LIMCH1-202ENST00000381753 TRBV5-7A0A0A0MS05 114 aa7.33□□□□□ -1.24
LIMCH1-202ENST00000381753 TRAV10A0A0B4J240 114 aa7.33□□□□□ -1.24
LIMCH1-202ENST00000381753 LINC00587B1AMM8 73 aa7.33□□□□□ -1.24
LIMCH1-202ENST00000381753 IGKV1-39P01597 117 aa7.33□□□□□ -1.24
LIMCH1-202ENST00000381753 IGKV1D-39P04432 117 aa7.33□□□□□ -1.24
LIMCH1-202ENST00000381753 GFI1BQ5VTD9 330 aa7.33□□□□□ -1.24
LIMCH1-202ENST00000381753 IGKV1-5P01602 117 aa7.33□□□□□ -1.24
LIMCH1-202ENST00000381753 KRTAP10-9P60411 292 aa7.33□□□□□ -1.24
LIMCH1-202ENST00000381753 SCRT1Q9BWW7 348 aa7.33□□□□□ -1.24
LIMCH1-202ENST00000381753 PROK2Q9HC23 129 aa7.33□□□□□ -1.24
LIMCH1-202ENST00000381753 GBF1Q92538 1859 aa7.33□□□□□ -1.24
LIMCH1-202ENST00000381753 TRAV3A0A0B4J244 114 aa7.33□□□□□ -1.24
LIMCH1-202ENST00000381753 F8VVB4 439 aa7.33□□□□□ -1.24
LIMCH1-202ENST00000381753 F8VWA3 439 aa7.33□□□□□ -1.24
LIMCH1-202ENST00000381753 CGAP01215 116 aa7.33□□□□□ -1.24
LIMCH1-202ENST00000381753 FOXI2Q6ZQN5 318 aa7.33□□□□□ -1.24
LIMCH1-202ENST00000381753 NFE4Q86UQ8 179 aa7.33□□□□□ -1.24
LIMCH1-202ENST00000381753 C10orf126Q8N4M7 172 aa7.32□□□□□ -1.24
LIMCH1-202ENST00000381753 RNF182Q8N6D2 247 aa7.32□□□□□ -1.24
LIMCH1-202ENST00000381753 OR2K2Q8NGT1 345 aa7.32□□□□□ -1.24
LIMCH1-202ENST00000381753 ZNRF2Q8NHG8 242 aa7.32□□□□□ -1.24
LIMCH1-202ENST00000381753 DEFB104AQ8WTQ1 72 aa7.32□□□□□ -1.24
LIMCH1-202ENST00000381753 TMEM243Q9BU79 118 aa7.32□□□□□ -1.24
LIMCH1-202ENST00000381753 KAAG1Q9UBP8 84 aa7.32□□□□□ -1.24
LIMCH1-202ENST00000381753 PSG8Q9UQ74 426 aa7.32□□□□□ -1.24
LIMCH1-202ENST00000381753 PTPRFP10586 1907 aa7.32□□□□□ -1.24
LIMCH1-202ENST00000381753 IGHV1OR15-1A0A075B7D0 117 aa7.32□□□□□ -1.24
LIMCH1-202ENST00000381753 A0A087X0M5 115 aa7.32□□□□□ -1.24
LIMCH1-202ENST00000381753 A0A1B0GX30 115 aa7.32□□□□□ -1.24
LIMCH1-202ENST00000381753 TIMM17AQ99595 171 aa7.32□□□□□ -1.24
LIMCH1-202ENST00000381753 LINC00114Q6XXX2 140 aa7.32□□□□□ -1.24
LIMCH1-202ENST00000381753 TMEM136Q6ZRR5 245 aa7.32□□□□□ -1.24
LIMCH1-202ENST00000381753 TP53BP1Q12888 1972 aaPredicted RBP7.32□□□□□ -1.24
LIMCH1-202ENST00000381753 A0A087WWL8 130 aa7.32□□□□□ -1.24
LIMCH1-202ENST00000381753 TRAV25A0A0B4J276 109 aa7.32□□□□□ -1.24
LIMCH1-202ENST00000381753 NPIPB5A8MRT5 1133 aa7.32□□□□□ -1.24
LIMCH1-202ENST00000381753 MIR17HGQ75NE6 70 aa7.32□□□□□ -1.24
LIMCH1-202ENST00000381753 GAGE10A6NGK3 116 aa7.32□□□□□ -1.24
LIMCH1-202ENST00000381753 PRSS29PA6NIE9 313 aa7.32□□□□□ -1.24
LIMCH1-202ENST00000381753 NHLRC4P0CG21 123 aaPredicted RBP7.32□□□□□ -1.24
LIMCH1-202ENST00000381753 TMEM160Q9NX00 188 aa7.32□□□□□ -1.24
LIMCH1-202ENST00000381753 PAM16Q9Y3D7 125 aa7.32□□□□□ -1.24
LIMCH1-202ENST00000381753 WDR81Q562E7 1941 aa7.31□□□□□ -1.24
LIMCH1-202ENST00000381753 hDV102S1A0JD36 115 aa7.31□□□□□ -1.24
LIMCH1-202ENST00000381753 HLA-DQB1P01920 261 aa7.31□□□□□ -1.24
LIMCH1-202ENST00000381753 DANCRP0C864 163 aa7.31□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 108.6 ms