RNA–Protein interactions for RNA: ENST00000374876.4

CCDC40-202, Transcript of coiled-coil domain containing 40, humanhuman

TSL 1 (best) BASIC

Gene CCDC40, Length 2,010 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-202ENST00000374876 ESDP10768 282 aa12.18□□□□□ -0.46
CCDC40-202ENST00000374876 TEX29Q8N6K0 151 aa12.18□□□□□ -0.46
CCDC40-202ENST00000374876 TMEM68Q96MH6 324 aa12.18□□□□□ -0.46
CCDC40-202ENST00000374876 MRPL27Q9P0M9 148 aaKnown RBP12.18□□□□□ -0.46
CCDC40-202ENST00000374876 NCBP2LA6PVI3 153 aaKnown RBP12.18□□□□□ -0.46
CCDC40-202ENST00000374876 TOMM40O96008 361 aa12.18□□□□□ -0.46
CCDC40-202ENST00000374876 TCRAP04437 139 aa12.18□□□□□ -0.46
CCDC40-202ENST00000374876 OTORQ9NRC9 128 aa12.18□□□□□ -0.46
CCDC40-202ENST00000374876 OOSP1A8MZH6 123 aa12.17□□□□□ -0.46
CCDC40-202ENST00000374876 LINC00310P59036 64 aa12.17□□□□□ -0.46
CCDC40-202ENST00000374876 KIAA1644Q3SXP7 199 aa12.17□□□□□ -0.46
CCDC40-202ENST00000374876 FBLN7Q53RD9 439 aa12.17□□□□□ -0.46
CCDC40-202ENST00000374876 RASL11AQ6T310 242 aa12.17□□□□□ -0.46
CCDC40-202ENST00000374876 ZNF664Q8N3J9 261 aa12.17□□□□□ -0.46
CCDC40-202ENST00000374876 ARPC1AQ92747 370 aa12.17□□□□□ -0.46
CCDC40-202ENST00000374876 GNB4Q9HAV0 340 aa12.17□□□□□ -0.46
CCDC40-202ENST00000374876 ZNF586Q9NXT0 402 aa12.17□□□□□ -0.46
CCDC40-202ENST00000374876 F2Z2F3 143 aa12.16□□□□□ -0.46
CCDC40-202ENST00000374876 APCSP02743 223 aa12.16□□□□□ -0.46
CCDC40-202ENST00000374876 MINOS1Q5TGZ0 78 aa12.16□□□□□ -0.46
CCDC40-202ENST00000374876 ZNF562Q6V9R5 426 aa12.16□□□□□ -0.46
CCDC40-202ENST00000374876 PIP4P2Q8N4L2 257 aa12.16□□□□□ -0.46
CCDC40-202ENST00000374876 NUP35Q8NFH5 326 aa12.16□□□□□ -0.46
CCDC40-202ENST00000374876 TSKUQ8WUA8 353 aa12.16□□□□□ -0.46
CCDC40-202ENST00000374876 SAMD10Q9BYL1 202 aa12.16□□□□□ -0.46
CCDC40-202ENST00000374876 MINOS1-NBL1R4GNA1 71 aa12.16□□□□□ -0.46
CCDC40-202ENST00000374876 IGHV1-69DA0A0B4J2H0 117 aa12.16□□□□□ -0.46
CCDC40-202ENST00000374876 NPIPB5A8MRT5 1133 aa12.16□□□□□ -0.46
CCDC40-202ENST00000374876 LTAP01374 205 aa12.16□□□□□ -0.46
CCDC40-202ENST00000374876 IGHV1-69P01742 117 aa12.16□□□□□ -0.46
CCDC40-202ENST00000374876 OR10J3Q5JRS4 329 aa12.16□□□□□ -0.46
CCDC40-202ENST00000374876 PRIMA1Q86XR5 153 aa12.16□□□□□ -0.46
CCDC40-202ENST00000374876 DYNAPQ8N1N2 210 aa12.16□□□□□ -0.46
CCDC40-202ENST00000374876 WIPF2Q8TF74 440 aaPredicted RBP12.16□□□□□ -0.46
CCDC40-202ENST00000374876 NOL4LQ96MY1 436 aaPredicted RBP12.16□□□□□ -0.46
CCDC40-202ENST00000374876 SHANK2-AS3Q9BTD1 123 aa12.16□□□□□ -0.46
CCDC40-202ENST00000374876 MLST8Q9BVC4 326 aa12.16□□□□□ -0.46
CCDC40-202ENST00000374876 NAGKQ9UJ70 344 aa12.16□□□□□ -0.46
CCDC40-202ENST00000374876 HIGD1CA8MV81 97 aa12.15□□□□□ -0.46
CCDC40-202ENST00000374876 GNG7O60262 68 aa12.15□□□□□ -0.46
CCDC40-202ENST00000374876 SRIP30626 198 aa12.15□□□□□ -0.46
CCDC40-202ENST00000374876 BRS3P32247 399 aa12.15□□□□□ -0.46
CCDC40-202ENST00000374876 SRSF2Q01130 221 aaKnown RBP12.15□□□□□ -0.46
CCDC40-202ENST00000374876 BPIFA4PQ86YQ2 179 aa12.15□□□□□ -0.46
CCDC40-202ENST00000374876 OR4F17Q8NGA8 305 aa12.15□□□□□ -0.46
CCDC40-202ENST00000374876 RNF125Q96EQ8 232 aa12.15□□□□□ -0.46
CCDC40-202ENST00000374876 NEU1Q99519 415 aa12.15□□□□□ -0.46
CCDC40-202ENST00000374876 RNF24Q9Y225 148 aa12.15□□□□□ -0.46
CCDC40-202ENST00000374876 C2CD3Q4AC94 2353 aa12.15□□□□□ -0.46
CCDC40-202ENST00000374876 TRAV30A0A087WSZ9 112 aa12.15□□□□□ -0.47
CCDC40-202ENST00000374876 BMPR1BO00238 502 aa12.15□□□□□ -0.47
CCDC40-202ENST00000374876 IL4P05112 153 aa12.15□□□□□ -0.47
CCDC40-202ENST00000374876 UBE2E1P51965 193 aa12.15□□□□□ -0.47
CCDC40-202ENST00000374876 EXOC3-AS1Q8N2X6 119 aa12.15□□□□□ -0.47
CCDC40-202ENST00000374876 ZNF491Q8N8L2 437 aa12.15□□□□□ -0.47
CCDC40-202ENST00000374876 HSPB9Q9BQS6 159 aa12.15□□□□□ -0.47
CCDC40-202ENST00000374876 S4R3C0 116 aa12.15□□□□□ -0.47
CCDC40-202ENST00000374876 IGLV11-55A0A075B6I3 123 aa12.14□□□□□ -0.47
CCDC40-202ENST00000374876 H3BRN7 92 aa12.14□□□□□ -0.47
CCDC40-202ENST00000374876 ZNF253O75346 499 aa12.14□□□□□ -0.47
CCDC40-202ENST00000374876 TMEM11P17152 192 aa12.14□□□□□ -0.47
CCDC40-202ENST00000374876 Q8N6K4 173 aa12.14□□□□□ -0.47
CCDC40-202ENST00000374876 C14orf144Q96I85 54 aa12.14□□□□□ -0.47
CCDC40-202ENST00000374876 ZNF48Q96MX3 618 aaPredicted RBP12.14□□□□□ -0.47
CCDC40-202ENST00000374876 RPP21Q9H633 154 aaKnown RBP12.14□□□□□ -0.47
CCDC40-202ENST00000374876 NPFFO15130 113 aa12.13□□□□□ -0.47
CCDC40-202ENST00000374876 P01737 135 aa12.13□□□□□ -0.47
CCDC40-202ENST00000374876 MFAP4P55083 255 aa12.13□□□□□ -0.47
CCDC40-202ENST00000374876 DEFB112Q30KQ8 113 aa12.13□□□□□ -0.47
CCDC40-202ENST00000374876 Q6ZWC4 215 aa12.13□□□□□ -0.47
CCDC40-202ENST00000374876 S100A7AQ86SG5 101 aa12.13□□□□□ -0.47
CCDC40-202ENST00000374876 TTC9CQ8N5M4 171 aa12.13□□□□□ -0.47
CCDC40-202ENST00000374876 SIGLECL1Q8N7X8 197 aa12.13□□□□□ -0.47
CCDC40-202ENST00000374876 DAZAP1Q96EP5 407 aaKnown RBP12.13□□□□□ -0.47
CCDC40-202ENST00000374876 FANCD2OSQ96PS1 177 aa12.13□□□□□ -0.47
CCDC40-202ENST00000374876 TRBV19A0A075B6N1 114 aa12.13□□□□□ -0.47
CCDC40-202ENST00000374876 ZNF705FA8MVS1 300 aaPredicted RBP12.13□□□□□ -0.47
CCDC40-202ENST00000374876 A8MWP6 167 aa12.13□□□□□ -0.47
CCDC40-202ENST00000374876 ZNF705DP0CH99 300 aaPredicted RBP12.13□□□□□ -0.47
CCDC40-202ENST00000374876 ZNF705BP0CI00 300 aaPredicted RBP12.13□□□□□ -0.47
CCDC40-202ENST00000374876 NDPQ00604 133 aa12.13□□□□□ -0.47
CCDC40-202ENST00000374876 SLAQ13239 276 aa12.13□□□□□ -0.47
CCDC40-202ENST00000374876 EBI3Q14213 229 aa12.13□□□□□ -0.47
CCDC40-202ENST00000374876 GOLT1AQ6ZVE7 132 aa12.13□□□□□ -0.47
CCDC40-202ENST00000374876 REC114Q7Z4M0 266 aa12.13□□□□□ -0.47
CCDC40-202ENST00000374876 Q86TA4 180 aa12.13□□□□□ -0.47
CCDC40-202ENST00000374876 TMEM190Q8WZ59 177 aa12.13□□□□□ -0.47
CCDC40-202ENST00000374876 THYN1Q9P016 225 aa12.13□□□□□ -0.47
CCDC40-202ENST00000374876 ZNF492Q9P255 531 aa12.13□□□□□ -0.47
CCDC40-202ENST00000374876 TRAV8-1A0A0A6YYK1 113 aa12.12□□□□□ -0.47
CCDC40-202ENST00000374876 WI2-2373I1.2A0A1W2PRP0 233 aa12.12□□□□□ -0.47
CCDC40-202ENST00000374876 A8MWL6 223 aa12.12□□□□□ -0.47
CCDC40-202ENST00000374876 FCGR2BP31994 310 aaPredicted RBP12.12□□□□□ -0.47
CCDC40-202ENST00000374876 SAA4P35542 130 aa12.12□□□□□ -0.47
CCDC40-202ENST00000374876 SCGB2A2Q13296 93 aa12.12□□□□□ -0.47
CCDC40-202ENST00000374876 Q56UQ5 140 aa12.12□□□□□ -0.47
CCDC40-202ENST00000374876 CT83Q5H943 113 aa12.12□□□□□ -0.47
CCDC40-202ENST00000374876 LINC00322Q6ZN03 302 aaPredicted RBP12.12□□□□□ -0.47
CCDC40-202ENST00000374876 C9orf139Q6ZV77 190 aa12.12□□□□□ -0.47
CCDC40-202ENST00000374876 ATP5L2Q7Z4Y8 100 aa12.12□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 64.4 ms