RNA–Protein interactions for RNA: ENST00000359947.8

PTPRF-201, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best) BASIC

Gene PTPRF, Length 7,727 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-201ENST00000359947 CEACAM8P31997 349 aaPredicted RBP12.63□□□□□ -0.39
PTPRF-201ENST00000359947 ATP5L2Q7Z4Y8 100 aa12.63□□□□□ -0.39
PTPRF-201ENST00000359947 TSKUQ8WUA8 353 aa12.63□□□□□ -0.39
PTPRF-201ENST00000359947 SLC25A2Q9BXI2 301 aa12.63□□□□□ -0.39
PTPRF-201ENST00000359947 MORN3Q6PF18 240 aaPredicted RBP12.62□□□□□ -0.39
PTPRF-201ENST00000359947 GHRHP01286 108 aa12.62□□□□□ -0.39
PTPRF-201ENST00000359947 LAMTOR3Q9UHA4 124 aa12.62□□□□□ -0.39
PTPRF-201ENST00000359947 SMKR1H3BMG3 65 aa12.62□□□□□ -0.39
PTPRF-201ENST00000359947 IGKV1-5P01602 117 aa12.62□□□□□ -0.39
PTPRF-201ENST00000359947 OR2K2Q8NGT1 345 aa12.62□□□□□ -0.39
PTPRF-201ENST00000359947 OSTCQ9NRP0 149 aa12.62□□□□□ -0.39
PTPRF-201ENST00000359947 GAGE12JA6NER3 117 aa12.62□□□□□ -0.39
PTPRF-201ENST00000359947 PPBPP02775 128 aa12.62□□□□□ -0.39
PTPRF-201ENST00000359947 GAGE1Q13065 139 aa12.62□□□□□ -0.39
PTPRF-201ENST00000359947 GAGE4Q13068 117 aa12.62□□□□□ -0.39
PTPRF-201ENST00000359947 GAGE5Q13069 117 aa12.62□□□□□ -0.39
PTPRF-201ENST00000359947 GAGE13Q4V321 117 aa12.62□□□□□ -0.39
PTPRF-201ENST00000359947 FNDC4Q9H6D8 234 aaPredicted RBP12.62□□□□□ -0.39
PTPRF-201ENST00000359947 ZMAT4Q9H898 229 aa12.62□□□□□ -0.39
PTPRF-201ENST00000359947 PLCE1Q9P212 2302 aa12.62□□□□□ -0.39
PTPRF-201ENST00000359947 IGHV2-70DA0A0C4DH43 119 aa12.62□□□□□ -0.39
PTPRF-201ENST00000359947 SS18Q15532 418 aa12.62□□□□□ -0.39
PTPRF-201ENST00000359947 MEGF9Q9H1U4 602 aa12.62□□□□□ -0.39
PTPRF-201ENST00000359947 NTF4P34130 210 aa12.61□□□□□ -0.39
PTPRF-201ENST00000359947 M0R2P5 195 aa12.61□□□□□ -0.39
PTPRF-201ENST00000359947 TOMM40O96008 361 aa12.61□□□□□ -0.39
PTPRF-201ENST00000359947 H3BUT2 72 aa12.61□□□□□ -0.39
PTPRF-201ENST00000359947 BTCP35070 178 aa12.61□□□□□ -0.39
PTPRF-201ENST00000359947 GAGE12BA1L429 117 aa12.61□□□□□ -0.39
PTPRF-201ENST00000359947 GAGE7O76087 117 aa12.61□□□□□ -0.39
PTPRF-201ENST00000359947 GAGE12FP0CL80 117 aa12.61□□□□□ -0.39
PTPRF-201ENST00000359947 GAGE12GP0CL81 117 aa12.61□□□□□ -0.39
PTPRF-201ENST00000359947 GAGE12IP0CL82 117 aa12.61□□□□□ -0.39
PTPRF-201ENST00000359947 PAX9P55771 341 aa12.61□□□□□ -0.39
PTPRF-201ENST00000359947 TRAV12-2A0A075B6T6 113 aa12.61□□□□□ -0.39
PTPRF-201ENST00000359947 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP12.61□□□□□ -0.39
PTPRF-201ENST00000359947 PSG3Q16557 428 aa12.61□□□□□ -0.39
PTPRF-201ENST00000359947 LY6G6FQ5SQ64 297 aa12.61□□□□□ -0.39
PTPRF-201ENST00000359947 IFI27L1Q96BM0 104 aa12.61□□□□□ -0.39
PTPRF-201ENST00000359947 FBLN5Q9UBX5 448 aa12.6□□□□□ -0.39
PTPRF-201ENST00000359947 TCTEX1D4Q5JR98 221 aa12.6□□□□□ -0.39
PTPRF-201ENST00000359947 HS3ST6Q96QI5 342 aa12.6□□□□□ -0.39
PTPRF-201ENST00000359947 CITED2Q99967 270 aaPredicted RBP12.6□□□□□ -0.39
PTPRF-201ENST00000359947 NACAE9PAV3 2078 aa12.6□□□□□ -0.39
PTPRF-201ENST00000359947 ATRXP46100 2492 aa12.59□□□□□ -0.39
PTPRF-201ENST00000359947 GRNP28799 593 aaKnown RBP12.59□□□□□ -0.39
PTPRF-201ENST00000359947 F8WEM9 126 aa12.59□□□□□ -0.39
PTPRF-201ENST00000359947 ZNF561-AS1K7EIQ3 104 aa12.59□□□□□ -0.39
PTPRF-201ENST00000359947 ZNF625Q96I27 306 aaPredicted RBP12.59□□□□□ -0.39
PTPRF-201ENST00000359947 SPXQ9BT56 116 aa12.59□□□□□ -0.39
PTPRF-201ENST00000359947 LY6G6EA0A0G2JKS1 128 aa12.59□□□□□ -0.39
PTPRF-201ENST00000359947 AGMATQ9BSE5 352 aa12.59□□□□□ -0.39
PTPRF-201ENST00000359947 U3KQA8 63 aa12.59□□□□□ -0.39
PTPRF-201ENST00000359947 CFHR2P36980 270 aa12.59□□□□□ -0.39
PTPRF-201ENST00000359947 PLA2G2CQ5R387 149 aa12.59□□□□□ -0.39
PTPRF-201ENST00000359947 MYLKQ15746 1914 aa12.59□□□□□ -0.39
PTPRF-201ENST00000359947 NDUFS7O75251 213 aa12.59□□□□□ -0.39
PTPRF-201ENST00000359947 TCF15Q12870 199 aa12.59□□□□□ -0.39
PTPRF-201ENST00000359947 MST1LQ2TV78 715 aa12.58□□□□□ -0.4
PTPRF-201ENST00000359947 MED13LQ71F56 2210 aa12.58□□□□□ -0.4
PTPRF-201ENST00000359947 TRAV9-1A0A075B6T8 112 aa12.58□□□□□ -0.4
PTPRF-201ENST00000359947 A0A1W2PPI3 338 aa12.58□□□□□ -0.4
PTPRF-201ENST00000359947 GSN-AS1Q9NRJ2 163 aa12.58□□□□□ -0.4
PTPRF-201ENST00000359947 A8MXK9 166 aa12.58□□□□□ -0.4
PTPRF-201ENST00000359947 NDUFB8O95169 186 aa12.58□□□□□ -0.4
PTPRF-201ENST00000359947 NBL1P41271 181 aa12.58□□□□□ -0.4
PTPRF-201ENST00000359947 APOC4P55056 127 aa12.58□□□□□ -0.4
PTPRF-201ENST00000359947 AZU1P20160 251 aa12.58□□□□□ -0.4
PTPRF-201ENST00000359947 FAM120AOSQ5T036 256 aa12.58□□□□□ -0.4
PTPRF-201ENST00000359947 VCYO14598 125 aa12.57□□□□□ -0.4
PTPRF-201ENST00000359947 EREGO14944 169 aa12.57□□□□□ -0.4
PTPRF-201ENST00000359947 SUPT4H1P63272 117 aaKnown RBP12.57□□□□□ -0.4
PTPRF-201ENST00000359947 NRGNQ92686 78 aa12.57□□□□□ -0.4
PTPRF-201ENST00000359947 KIAA1671Q9BY89 1806 aa12.57□□□□□ -0.4
PTPRF-201ENST00000359947 GLRX5Q86SX6 157 aa12.57□□□□□ -0.4
PTPRF-201ENST00000359947 A0A087WWC5 75 aa12.56□□□□□ -0.4
PTPRF-201ENST00000359947 ATRAIDQ6UW56 229 aa12.56□□□□□ -0.4
PTPRF-201ENST00000359947 IGHV3-38A0A0C4DH36 116 aa12.56□□□□□ -0.4
PTPRF-201ENST00000359947 RASL10AQ92737 203 aa12.56□□□□□ -0.4
PTPRF-201ENST00000359947 IGFBPL1Q8WX77 278 aa12.56□□□□□ -0.4
PTPRF-201ENST00000359947 LHBP01229 141 aa12.56□□□□□ -0.4
PTPRF-201ENST00000359947 K7EM74 188 aa12.56□□□□□ -0.4
PTPRF-201ENST00000359947 RNASE2P10153 161 aaKnown RBP12.56□□□□□ -0.4
PTPRF-201ENST00000359947 CLPSL2Q6UWE3 100 aa12.56□□□□□ -0.4
PTPRF-201ENST00000359947 ZNF562Q6V9R5 426 aa12.56□□□□□ -0.4
PTPRF-201ENST00000359947 ANAPC13Q9BS18 74 aa12.56□□□□□ -0.4
PTPRF-201ENST00000359947 GNB1LQ9BYB4 327 aa12.56□□□□□ -0.4
PTPRF-201ENST00000359947 SHANK1Q9Y566 2161 aa12.55□□□□□ -0.4
PTPRF-201ENST00000359947 IGFL3Q6UXB1 125 aa12.55□□□□□ -0.4
PTPRF-201ENST00000359947 CARHSP1Q9Y2V2 147 aaKnown RBP12.55□□□□□ -0.4
PTPRF-201ENST00000359947 HEATR5AQ86XA9 2040 aa12.55□□□□□ -0.4
PTPRF-201ENST00000359947 LINC00479Q96M42 142 aa12.55□□□□□ -0.4
PTPRF-201ENST00000359947 IGLV2-23P01705 113 aa12.55□□□□□ -0.4
PTPRF-201ENST00000359947 C8orf49Q96NF6 230 aa12.54□□□□□ -0.4
PTPRF-201ENST00000359947 MS4A6AQ9H2W1 248 aa12.54□□□□□ -0.4
PTPRF-201ENST00000359947 ARMS2P0C7Q2 107 aa12.54□□□□□ -0.4
PTPRF-201ENST00000359947 RPP25LQ8N5L8 163 aaKnown RBP12.54□□□□□ -0.4
PTPRF-201ENST00000359947 DLX4Q92988 240 aaPredicted RBP12.54□□□□□ -0.4
PTPRF-201ENST00000359947 LIME1Q9H400 295 aa12.54□□□□□ -0.4
PTPRF-201ENST00000359947 ZFHX2Q9C0A1 2572 aaPredicted RBP12.54□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 123.9 ms