RNA–Protein interactions for RNA: ENST00000357857.14

CLN3-204, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,720 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-204ENST00000357857 A0A087X0K7 114 aa14.25□□□□□ -0.13
CLN3-204ENST00000357857 ZNF785A8K8V0 405 aa14.25□□□□□ -0.13
CLN3-204ENST00000357857 LINC01619G3V211 115 aa14.25□□□□□ -0.13
CLN3-204ENST00000357857 SLC17A3O00476 420 aa14.25□□□□□ -0.13
CLN3-204ENST00000357857 HIST2H2BDQ6DRA6 164 aa14.25□□□□□ -0.13
CLN3-204ENST00000357857 ATRAIDQ6UW56 229 aa14.25□□□□□ -0.13
CLN3-204ENST00000357857 SIGLEC15Q6ZMC9 328 aa14.25□□□□□ -0.13
CLN3-204ENST00000357857 GLMPQ8WWB7 406 aa14.25□□□□□ -0.13
CLN3-204ENST00000357857 TVP23CQ96ET8 276 aa14.25□□□□□ -0.13
CLN3-204ENST00000357857 M0R036 132 aa14.24□□□□□ -0.13
CLN3-204ENST00000357857 LGALS9O00182 355 aa14.24□□□□□ -0.13
CLN3-204ENST00000357857 SYNJ2BPP57105 145 aa14.24□□□□□ -0.13
CLN3-204ENST00000357857 C1QL4Q86Z23 238 aa14.24□□□□□ -0.13
CLN3-204ENST00000357857 EXOC3-AS1Q8N2X6 119 aa14.24□□□□□ -0.13
CLN3-204ENST00000357857 C5orf17Q8NAS9 161 aa14.24□□□□□ -0.13
CLN3-204ENST00000357857 OR11H1Q8NG94 326 aa14.24□□□□□ -0.13
CLN3-204ENST00000357857 OR1N2Q8NGR9 330 aa14.24□□□□□ -0.13
CLN3-204ENST00000357857 DPF1Q92782 380 aa14.24□□□□□ -0.13
CLN3-204ENST00000357857 NAT8Q9UHE5 227 aa14.24□□□□□ -0.13
CLN3-204ENST00000357857 EPDR1Q9UM22 224 aa14.24□□□□□ -0.13
CLN3-204ENST00000357857 PEX7O00628 323 aa14.24□□□□□ -0.13
CLN3-204ENST00000357857 PSG9Q00887 426 aa14.24□□□□□ -0.13
CLN3-204ENST00000357857 TMEM241Q24JQ0 296 aa14.24□□□□□ -0.13
CLN3-204ENST00000357857 C2CD4CQ8TF44 421 aa14.24□□□□□ -0.13
CLN3-204ENST00000357857 HIST1H2BAQ96A08 127 aa14.24□□□□□ -0.13
CLN3-204ENST00000357857 CITED2Q99967 270 aaPredicted RBP14.24□□□□□ -0.13
CLN3-204ENST00000357857 SMPXQ9UHP9 88 aa14.24□□□□□ -0.13
CLN3-204ENST00000357857 TSSC4Q9Y5U2 329 aaPredicted RBP14.24□□□□□ -0.13
CLN3-204ENST00000357857 A8MWP6 167 aa14.23□□□□□ -0.13
CLN3-204ENST00000357857 ZNF253O75346 499 aa14.23□□□□□ -0.13
CLN3-204ENST00000357857 SCO1O75880 301 aa14.23□□□□□ -0.13
CLN3-204ENST00000357857 SLURP1P55000 103 aa14.23□□□□□ -0.13
CLN3-204ENST00000357857 GNG5P63218 68 aa14.23□□□□□ -0.13
CLN3-204ENST00000357857 AWAT1Q58HT5 328 aa14.23□□□□□ -0.13
CLN3-204ENST00000357857 C8orf86Q6ZUL3 223 aa14.23□□□□□ -0.13
CLN3-204ENST00000357857 RHPN1-AS1Q9BWJ2 59 aa14.23□□□□□ -0.13
CLN3-204ENST00000357857 AAMDCQ9H7C9 122 aa14.23□□□□□ -0.13
CLN3-204ENST00000357857 SDF2L1Q9HCN8 221 aa14.23□□□□□ -0.13
CLN3-204ENST00000357857 TMEM213A2RRL7 107 aa14.22□□□□□ -0.13
CLN3-204ENST00000357857 AKR1C3P42330 323 aa14.22□□□□□ -0.13
CLN3-204ENST00000357857 RPL35P42766 123 aaKnown RBP14.22□□□□□ -0.13
CLN3-204ENST00000357857 KLF5Q13887 457 aaPredicted RBP14.22□□□□□ -0.13
CLN3-204ENST00000357857 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa14.22□□□□□ -0.13
CLN3-204ENST00000357857 CMTM2Q8TAZ6 248 aa14.22□□□□□ -0.13
CLN3-204ENST00000357857 RPH3ALQ9UNE2 315 aa14.22□□□□□ -0.13
CLN3-204ENST00000357857 A0A1W2PRX2 142 aa14.21□□□□□ -0.13
CLN3-204ENST00000357857 HELTA6NFD8 242 aa14.21□□□□□ -0.13
CLN3-204ENST00000357857 CHEK1O14757 476 aa14.21□□□□□ -0.13
CLN3-204ENST00000357857 BMI1P35226 326 aa14.21□□□□□ -0.13
CLN3-204ENST00000357857 MEOX2P50222 304 aa14.21□□□□□ -0.13
CLN3-204ENST00000357857 PNRC1Q12796 327 aaPredicted RBP14.21□□□□□ -0.13
CLN3-204ENST00000357857 DUX3Q96PT4 197 aa14.21□□□□□ -0.13
CLN3-204ENST00000357857 EDN2P20800 178 aa14.21□□□□□ -0.14
CLN3-204ENST00000357857 CNN1P51911 297 aaKnown RBP14.21□□□□□ -0.14
CLN3-204ENST00000357857 ATG101Q9BSB4 218 aa14.21□□□□□ -0.14
CLN3-204ENST00000357857 A0A1B0GUS0 222 aa14.2□□□□□ -0.14
CLN3-204ENST00000357857 TCRAP04437 139 aa14.2□□□□□ -0.14
CLN3-204ENST00000357857 SLC50A1Q9BRV3 221 aa14.2□□□□□ -0.14
CLN3-204ENST00000357857 ZNF331Q9NQX6 463 aaPredicted RBP14.2□□□□□ -0.14
CLN3-204ENST00000357857 C9JCJ5 164 aa14.19□□□□□ -0.14
CLN3-204ENST00000357857 RPL23P62829 140 aaKnown RBP14.19□□□□□ -0.14
CLN3-204ENST00000357857 RHEBQ15382 184 aa14.19□□□□□ -0.14
CLN3-204ENST00000357857 ADIRFQ15847 76 aa14.19□□□□□ -0.14
CLN3-204ENST00000357857 RAX2Q96IS3 184 aa14.19□□□□□ -0.14
CLN3-204ENST00000357857 C2CD3Q4AC94 2353 aa14.19□□□□□ -0.14
CLN3-204ENST00000357857 TRBV20OR9-2A0A075B6H5 130 aa14.18□□□□□ -0.14
CLN3-204ENST00000357857 C7orf77A4D0Y5 90 aa14.18□□□□□ -0.14
CLN3-204ENST00000357857 LINC00479Q96M42 142 aa14.18□□□□□ -0.14
CLN3-204ENST00000357857 TEP1Q99973 2627 aaKnown RBP14.18□□□□□ -0.14
CLN3-204ENST00000357857 C2orf70A6NJV1 201 aa14.18□□□□□ -0.14
CLN3-204ENST00000357857 TAS2R60P59551 318 aa14.18□□□□□ -0.14
CLN3-204ENST00000357857 CENPWQ5EE01 88 aa14.18□□□□□ -0.14
CLN3-204ENST00000357857 RPS10P5Q9NQ39 176 aa14.18□□□□□ -0.14
CLN3-204ENST00000357857 SETD2Q9BYW2 2564 aaPredicted RBP14.17□□□□□ -0.14
CLN3-204ENST00000357857 TRAV34A0A0B4J273 112 aa14.17□□□□□ -0.14
CLN3-204ENST00000357857 M0R3E3 92 aa14.17□□□□□ -0.14
CLN3-204ENST00000357857 CCL24O00175 119 aa14.17□□□□□ -0.14
CLN3-204ENST00000357857 CSN1S1P47710 185 aa14.17□□□□□ -0.14
CLN3-204ENST00000357857 GNG4P50150 75 aa14.17□□□□□ -0.14
CLN3-204ENST00000357857 PEMTQ9UBM1 199 aa14.17□□□□□ -0.14
CLN3-204ENST00000357857 PGPEP1LA6NFU8 196 aa14.16□□□□□ -0.14
CLN3-204ENST00000357857 B4DEV8 164 aa14.16□□□□□ -0.14
CLN3-204ENST00000357857 S100A9P06702 114 aaKnown RBP14.16□□□□□ -0.14
CLN3-204ENST00000357857 CBLN1P23435 193 aa14.16□□□□□ -0.14
CLN3-204ENST00000357857 UBE2G1P62253 170 aa14.16□□□□□ -0.14
CLN3-204ENST00000357857 RPL11P62913 178 aaKnown RBP14.16□□□□□ -0.14
CLN3-204ENST00000357857 FHL3Q13643 280 aa14.16□□□□□ -0.14
CLN3-204ENST00000357857 TMEM183BQ1AE95 376 aa14.16□□□□□ -0.14
CLN3-204ENST00000357857 IGFL4Q6B9Z1 124 aa14.16□□□□□ -0.14
CLN3-204ENST00000357857 GOLT1AQ6ZVE7 132 aa14.16□□□□□ -0.14
CLN3-204ENST00000357857 TCF24Q7RTU0 167 aa14.16□□□□□ -0.14
CLN3-204ENST00000357857 LINC01551Q86U37 167 aa14.16□□□□□ -0.14
CLN3-204ENST00000357857 ARL6IP6Q8N6S5 226 aa14.16□□□□□ -0.14
CLN3-204ENST00000357857 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP14.16□□□□□ -0.14
CLN3-204ENST00000357857 DLX4Q92988 240 aaPredicted RBP14.16□□□□□ -0.14
CLN3-204ENST00000357857 IGF2BP2-AS1Q96M15 143 aa14.16□□□□□ -0.14
CLN3-204ENST00000357857 KLF12Q9Y4X4 402 aa14.16□□□□□ -0.14
CLN3-204ENST00000357857 LY96Q9Y6Y9 160 aa14.16□□□□□ -0.14
CLN3-204ENST00000357857 DIRC3C9JPN6 131 aa14.15□□□□□ -0.14
CLN3-204ENST00000357857 M0QZ24 198 aa14.15□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 59.3 ms