RNA–Protein interactions for RNA: ENST00000339162.11

PDLIM2-203, Transcript of PDZ and LIM domain 2, humanhuman

TSL 1 (best) BASIC

Gene PDLIM2, Length 2,226 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM2-203ENST00000339162 PRR27Q6MZM9 219 aa17.31■□□□□ 0.36
PDLIM2-203ENST00000339162 C10orf99Q6UWK7 81 aa17.31■□□□□ 0.36
PDLIM2-203ENST00000339162 GOLT1AQ6ZVE7 132 aa17.31■□□□□ 0.36
PDLIM2-203ENST00000339162 SMAD5-AS1Q9Y6J3 95 aa17.31■□□□□ 0.36
PDLIM2-203ENST00000339162 V9GYV3 84 aa17.31■□□□□ 0.36
PDLIM2-203ENST00000339162 GGCTO75223 188 aaKnown RBP17.31■□□□□ 0.36
PDLIM2-203ENST00000339162 ARL3P36405 182 aa17.31■□□□□ 0.36
PDLIM2-203ENST00000339162 RNF24Q9Y225 148 aa17.31■□□□□ 0.36
PDLIM2-203ENST00000339162 KLF12Q9Y4X4 402 aa17.31■□□□□ 0.36
PDLIM2-203ENST00000339162 IGLV1-40P01703 118 aa17.3■□□□□ 0.36
PDLIM2-203ENST00000339162 RPL7P18124 248 aaKnown RBP17.3■□□□□ 0.36
PDLIM2-203ENST00000339162 Q71RC1 249 aaPredicted RBP17.3■□□□□ 0.36
PDLIM2-203ENST00000339162 CFHR3Q02985 330 aa17.29■□□□□ 0.36
PDLIM2-203ENST00000339162 IBA57Q5T440 356 aaKnown RBP17.29■□□□□ 0.36
PDLIM2-203ENST00000339162 IGFL4Q6B9Z1 124 aa17.29■□□□□ 0.36
PDLIM2-203ENST00000339162 ASCL2Q99929 193 aa17.29■□□□□ 0.36
PDLIM2-203ENST00000339162 RAB9AP51151 201 aa17.29■□□□□ 0.36
PDLIM2-203ENST00000339162 RELQ04864 619 aaPredicted RBP17.29■□□□□ 0.36
PDLIM2-203ENST00000339162 SERTAD4Q9NUC0 356 aa17.29■□□□□ 0.36
PDLIM2-203ENST00000339162 H3BUA1 57 aa17.28■□□□□ 0.36
PDLIM2-203ENST00000339162 BUB3O43684 328 aa17.28■□□□□ 0.36
PDLIM2-203ENST00000339162 FOXL1Q12952 345 aa17.28■□□□□ 0.36
PDLIM2-203ENST00000339162 ACANP16112 2415 aa17.28■□□□□ 0.36
PDLIM2-203ENST00000339162 ZNF320A2RRD8 509 aa17.28■□□□□ 0.36
PDLIM2-203ENST00000339162 CA1P00915 261 aaPredicted RBP17.28■□□□□ 0.36
PDLIM2-203ENST00000339162 USMG5Q96IX5 58 aa17.28■□□□□ 0.36
PDLIM2-203ENST00000339162 IL36BQ9NZH7 164 aa17.28■□□□□ 0.36
PDLIM2-203ENST00000339162 OR4X2Q8NGF9 303 aa17.27■□□□□ 0.36
PDLIM2-203ENST00000339162 FRZBQ92765 325 aa17.27■□□□□ 0.36
PDLIM2-203ENST00000339162 FMC1Q96HJ9 113 aa17.27■□□□□ 0.36
PDLIM2-203ENST00000339162 GPR82Q96P67 336 aa17.27■□□□□ 0.36
PDLIM2-203ENST00000339162 IMMP2LQ96T52 175 aa17.27■□□□□ 0.36
PDLIM2-203ENST00000339162 SRD5A3Q9H8P0 318 aa17.27■□□□□ 0.36
PDLIM2-203ENST00000339162 GSN-AS1Q9NRJ2 163 aa17.27■□□□□ 0.36
PDLIM2-203ENST00000339162 OSTCQ9NRP0 149 aa17.27■□□□□ 0.36
PDLIM2-203ENST00000339162 FASNP49327 2511 aaKnown RBP17.27■□□□□ 0.35
PDLIM2-203ENST00000339162 UNQ9165/PRO28630Q6UXU0 137 aa17.27■□□□□ 0.35
PDLIM2-203ENST00000339162 NIT2Q9NQR4 276 aa17.27■□□□□ 0.35
PDLIM2-203ENST00000339162 IGLV2-11P01706 119 aa17.26■□□□□ 0.35
PDLIM2-203ENST00000339162 PRNTQ86SH4 94 aa17.26■□□□□ 0.35
PDLIM2-203ENST00000339162 LYPD1Q8N2G4 141 aa17.26■□□□□ 0.35
PDLIM2-203ENST00000339162 BRI3O95415 125 aa17.25■□□□□ 0.35
PDLIM2-203ENST00000339162 LTAP01374 205 aa17.25■□□□□ 0.35
PDLIM2-203ENST00000339162 TCL1AP56279 114 aa17.25■□□□□ 0.35
PDLIM2-203ENST00000339162 PDE6HQ13956 83 aa17.25■□□□□ 0.35
PDLIM2-203ENST00000339162 SIGLECL1Q8N7X8 197 aa17.25■□□□□ 0.35
PDLIM2-203ENST00000339162 METTL26Q96S19 204 aa17.25■□□□□ 0.35
PDLIM2-203ENST00000339162 AAMDCQ9H7C9 122 aa17.25■□□□□ 0.35
PDLIM2-203ENST00000339162 ZNF705GA8MUZ8 300 aaPredicted RBP17.25■□□□□ 0.35
PDLIM2-203ENST00000339162 HIST1H2BKO60814 126 aa17.25■□□□□ 0.35
PDLIM2-203ENST00000339162 HIST1H2BJP06899 126 aa17.25■□□□□ 0.35
PDLIM2-203ENST00000339162 HIST1H2BOP23527 126 aa17.25■□□□□ 0.35
PDLIM2-203ENST00000339162 HLA-DMBP28068 263 aa17.25■□□□□ 0.35
PDLIM2-203ENST00000339162 HIST1H2BBP33778 126 aa17.25■□□□□ 0.35
PDLIM2-203ENST00000339162 HIST1H2BDP58876 126 aa17.25■□□□□ 0.35
PDLIM2-203ENST00000339162 HIST1H2BCP62807 126 aa17.25■□□□□ 0.35
PDLIM2-203ENST00000339162 HIST2H2BEQ16778 126 aa17.25■□□□□ 0.35
PDLIM2-203ENST00000339162 RPEL1Q2QD12 228 aa17.25■□□□□ 0.35
PDLIM2-203ENST00000339162 HIST2H2BFQ5QNW6 126 aaPredicted RBP17.25■□□□□ 0.35
PDLIM2-203ENST00000339162 HIST1H2BHQ93079 126 aa17.25■□□□□ 0.35
PDLIM2-203ENST00000339162 HIST1H2BNQ99877 126 aa17.25■□□□□ 0.35
PDLIM2-203ENST00000339162 HIST1H2BMQ99879 126 aa17.25■□□□□ 0.35
PDLIM2-203ENST00000339162 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP17.24■□□□□ 0.35
PDLIM2-203ENST00000339162 LINC00322Q6ZN03 302 aaPredicted RBP17.24■□□□□ 0.35
PDLIM2-203ENST00000339162 MLST8Q9BVC4 326 aa17.24■□□□□ 0.35
PDLIM2-203ENST00000339162 ZNF785A8K8V0 405 aa17.24■□□□□ 0.35
PDLIM2-203ENST00000339162 PHOX2AO14813 284 aa17.24■□□□□ 0.35
PDLIM2-203ENST00000339162 SPINK4O60575 86 aa17.24■□□□□ 0.35
PDLIM2-203ENST00000339162 TRGC1P0CF51 173 aa17.24■□□□□ 0.35
PDLIM2-203ENST00000339162 Q86TA4 180 aa17.24■□□□□ 0.35
PDLIM2-203ENST00000339162 NUDT10Q8NFP7 164 aa17.24■□□□□ 0.35
PDLIM2-203ENST00000339162 NUDT11Q96G61 164 aa17.24■□□□□ 0.35
PDLIM2-203ENST00000339162 ATP6V0BQ99437 205 aa17.24■□□□□ 0.35
PDLIM2-203ENST00000339162 DIRC3C9JPN6 131 aa17.23■□□□□ 0.35
PDLIM2-203ENST00000339162 HOXA5P20719 270 aa17.23■□□□□ 0.35
PDLIM2-203ENST00000339162 SLC35B1P78383 322 aa17.23■□□□□ 0.35
PDLIM2-203ENST00000339162 LINC00587B1AMM8 73 aa17.23■□□□□ 0.35
PDLIM2-203ENST00000339162 FRMD6-AS1P0C7T7 363 aa17.23■□□□□ 0.35
PDLIM2-203ENST00000339162 PSMB8P28062 276 aa17.23■□□□□ 0.35
PDLIM2-203ENST00000339162 PRSS22Q9GZN4 317 aa17.23■□□□□ 0.35
PDLIM2-203ENST00000339162 ZNF702PQ9H963 129 aa17.23■□□□□ 0.35
PDLIM2-203ENST00000339162 A0A0G2JLM5 398 aa17.22■□□□□ 0.35
PDLIM2-203ENST00000339162 IGHG4P01861 327 aa17.22■□□□□ 0.35
PDLIM2-203ENST00000339162 S100A7P31151 101 aa17.22■□□□□ 0.35
PDLIM2-203ENST00000339162 PSG9Q00887 426 aa17.22■□□□□ 0.35
PDLIM2-203ENST00000339162 PRDM13Q9H4Q3 707 aa17.22■□□□□ 0.35
PDLIM2-203ENST00000339162 AKAP9Q99996 3911 aa17.22■□□□□ 0.35
PDLIM2-203ENST00000339162 TYMSP04818 313 aa17.21■□□□□ 0.35
PDLIM2-203ENST00000339162 NDUFA6P56556 154 aa17.21■□□□□ 0.35
PDLIM2-203ENST00000339162 ZNF705FA8MVS1 300 aaPredicted RBP17.21■□□□□ 0.35
PDLIM2-203ENST00000339162 NPFFR1Q9GZQ6 430 aa17.21■□□□□ 0.35
PDLIM2-203ENST00000339162 LURAP1LQ8IV03 231 aa17.2■□□□□ 0.34
PDLIM2-203ENST00000339162 FOXC2Q99958 501 aa17.2■□□□□ 0.34
PDLIM2-203ENST00000339162 IGKV2-40A0A087WW87 121 aaPredicted RBP17.2■□□□□ 0.34
PDLIM2-203ENST00000339162 GATCO43716 136 aaKnown RBP17.2■□□□□ 0.34
PDLIM2-203ENST00000339162 IGKV2D-40P01614 121 aaPredicted RBP17.2■□□□□ 0.34
PDLIM2-203ENST00000339162 ZNF331Q9NQX6 463 aaPredicted RBP17.2■□□□□ 0.34
PDLIM2-203ENST00000339162 ZNF580Q9UK33 172 aa17.2■□□□□ 0.34
PDLIM2-203ENST00000339162 PSG8Q9UQ74 426 aa17.2■□□□□ 0.34
PDLIM2-203ENST00000339162 U3KQE9 123 aa17.2■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms