RNA–Protein interactions for RNA: ENST00000333496.14

CLN3-201, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,608 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-201ENST00000333496 SMDT1Q9H4I9 107 aa11.63□□□□□ -0.55
CLN3-201ENST00000333496 CSTL1Q9H114 145 aa11.62□□□□□ -0.55
CLN3-201ENST00000333496 TP53TG1Q9Y2A0 90 aa11.62□□□□□ -0.55
CLN3-201ENST00000333496 SPRY2O43597 315 aa11.61□□□□□ -0.55
CLN3-201ENST00000333496 ORM2P19652 201 aa11.61□□□□□ -0.55
CLN3-201ENST00000333496 HBG1P69891 147 aa11.61□□□□□ -0.55
CLN3-201ENST00000333496 HBG2P69892 147 aa11.61□□□□□ -0.55
CLN3-201ENST00000333496 CASC10Q5T4H9 136 aa11.61□□□□□ -0.55
CLN3-201ENST00000333496 TMEM88Q6PEY1 159 aa11.61□□□□□ -0.55
CLN3-201ENST00000333496 CBLN2Q8IUK8 224 aa11.61□□□□□ -0.55
CLN3-201ENST00000333496 RNF183Q96D59 192 aa11.61□□□□□ -0.55
CLN3-201ENST00000333496 SLC45A2Q9UMX9 530 aa11.61□□□□□ -0.55
CLN3-201ENST00000333496 ZNF98A6NK75 572 aa11.6□□□□□ -0.55
CLN3-201ENST00000333496 KNCNA6PVL3 124 aa11.6□□□□□ -0.55
CLN3-201ENST00000333496 AGPAT2O15120 278 aa11.6□□□□□ -0.55
CLN3-201ENST00000333496 PLP1P60201 277 aa11.6□□□□□ -0.55
CLN3-201ENST00000333496 SLC38A11Q08AI6 406 aa11.6□□□□□ -0.55
CLN3-201ENST00000333496 GUK1Q16774 197 aa11.6□□□□□ -0.55
CLN3-201ENST00000333496 PSMG4Q5JS54 123 aa11.6□□□□□ -0.55
CLN3-201ENST00000333496 TEPPQ6URK8 271 aa11.6□□□□□ -0.55
CLN3-201ENST00000333496 HSD17B11Q8NBQ5 300 aa11.6□□□□□ -0.55
CLN3-201ENST00000333496 OR1B1Q8NGR6 318 aa11.6□□□□□ -0.55
CLN3-201ENST00000333496 GNPNAT1Q96EK6 184 aaPredicted RBP11.6□□□□□ -0.55
CLN3-201ENST00000333496 ATP5SQ99766 215 aa11.6□□□□□ -0.55
CLN3-201ENST00000333496 GGACTQ9BVM4 153 aa11.6□□□□□ -0.55
CLN3-201ENST00000333496 SEPSECSQ9HD40 501 aaKnown RBP11.6□□□□□ -0.55
CLN3-201ENST00000333496 TRPT1Q86TN4 253 aaKnown RBP11.6□□□□□ -0.55
CLN3-201ENST00000333496 STHQ8IWL8 128 aa11.6□□□□□ -0.55
CLN3-201ENST00000333496 OR8I2Q8N0Y5 310 aa11.6□□□□□ -0.55
CLN3-201ENST00000333496 C17orf77Q96MU5 243 aa11.6□□□□□ -0.55
CLN3-201ENST00000333496 SMCO4Q9NRQ5 59 aa11.6□□□□□ -0.55
CLN3-201ENST00000333496 DOK5Q9P104 306 aa11.6□□□□□ -0.55
CLN3-201ENST00000333496 LYSTQ99698 3801 aa11.59□□□□□ -0.55
CLN3-201ENST00000333496 SOCS3O14543 225 aa11.59□□□□□ -0.55
CLN3-201ENST00000333496 LINC00869P0C866 280 aa11.59□□□□□ -0.55
CLN3-201ENST00000333496 PPT1P50897 306 aa11.59□□□□□ -0.55
CLN3-201ENST00000333496 SELENOTP62341 195 aa11.59□□□□□ -0.55
CLN3-201ENST00000333496 DPPA3Q6W0C5 159 aa11.59□□□□□ -0.55
CLN3-201ENST00000333496 TMEM147Q9BVK8 224 aa11.59□□□□□ -0.55
CLN3-201ENST00000333496 SH3BGRL3Q9H299 93 aa11.59□□□□□ -0.55
CLN3-201ENST00000333496 SLC25A22Q9H936 323 aa11.59□□□□□ -0.55
CLN3-201ENST00000333496 GIG44P09565 113 aaPredicted RBP11.58□□□□□ -0.56
CLN3-201ENST00000333496 SNRPD3P62318 126 aaKnown RBP11.58□□□□□ -0.56
CLN3-201ENST00000333496 ACTL10Q5JWF8 245 aa11.58□□□□□ -0.56
CLN3-201ENST00000333496 C15orf54Q8N8G6 183 aa11.58□□□□□ -0.56
CLN3-201ENST00000333496 MGST2Q99735 147 aa11.58□□□□□ -0.56
CLN3-201ENST00000333496 SCRT1Q9BWW7 348 aa11.58□□□□□ -0.56
CLN3-201ENST00000333496 SLC25A39Q9BZJ4 359 aaPredicted RBP11.58□□□□□ -0.56
CLN3-201ENST00000333496 H3BRN7 92 aa11.57□□□□□ -0.56
CLN3-201ENST00000333496 CA1P00915 261 aaPredicted RBP11.57□□□□□ -0.56
CLN3-201ENST00000333496 ATP6V0CP27449 155 aa11.57□□□□□ -0.56
CLN3-201ENST00000333496 ATP6V1FQ16864 119 aa11.57□□□□□ -0.56
CLN3-201ENST00000333496 ZFAND6Q6FIF0 208 aa11.57□□□□□ -0.56
CLN3-201ENST00000333496 PATE2Q6UY27 113 aa11.57□□□□□ -0.56
CLN3-201ENST00000333496 OR2G3Q8NGZ4 309 aa11.57□□□□□ -0.56
CLN3-201ENST00000333496 FAM213BQ8TBF2 198 aa11.57□□□□□ -0.56
CLN3-201ENST00000333496 UHRF2Q96PU4 802 aa11.57□□□□□ -0.56
CLN3-201ENST00000333496 EIF5A2Q9GZV4 153 aaKnown RBP11.57□□□□□ -0.56
CLN3-201ENST00000333496 C9JQL5 133 aa11.57□□□□□ -0.56
CLN3-201ENST00000333496 HYPMO75409 117 aa11.57□□□□□ -0.56
CLN3-201ENST00000333496 IFNA5P01569 189 aa11.57□□□□□ -0.56
CLN3-201ENST00000333496 DEFB1P60022 68 aa11.57□□□□□ -0.56
CLN3-201ENST00000333496 RHEBQ15382 184 aa11.57□□□□□ -0.56
CLN3-201ENST00000333496 VWC2Q2TAL6 325 aa11.57□□□□□ -0.56
CLN3-201ENST00000333496 SHANK2-AS3Q9BTD1 123 aa11.57□□□□□ -0.56
CLN3-201ENST00000333496 SLC35B3Q9H1N7 401 aa11.57□□□□□ -0.56
CLN3-201ENST00000333496 HIGD1AQ9Y241 93 aa11.57□□□□□ -0.56
CLN3-201ENST00000333496 A0A0J9YWU9 116 aa11.56□□□□□ -0.56
CLN3-201ENST00000333496 HBE1P02100 147 aa11.56□□□□□ -0.56
CLN3-201ENST00000333496 OR5G3P0C626 314 aa11.56□□□□□ -0.56
CLN3-201ENST00000333496 RAB2AP61019 212 aa11.56□□□□□ -0.56
CLN3-201ENST00000333496 GDF5OSQ5U4N7 250 aa11.56□□□□□ -0.56
CLN3-201ENST00000333496 WDR83OSQ9Y284 106 aa11.56□□□□□ -0.56
CLN3-201ENST00000333496 GALR1P47211 349 aa11.55□□□□□ -0.56
CLN3-201ENST00000333496 PSMB3P49720 205 aa11.55□□□□□ -0.56
CLN3-201ENST00000333496 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa11.55□□□□□ -0.56
CLN3-201ENST00000333496 SCGB1C1Q8TD33 95 aa11.55□□□□□ -0.56
CLN3-201ENST00000333496 GATAD1Q8WUU5 269 aa11.55□□□□□ -0.56
CLN3-201ENST00000333496 RSG1Q9BU20 258 aa11.55□□□□□ -0.56
CLN3-201ENST00000333496 PARD6GQ9BYG4 376 aaPredicted RBP11.55□□□□□ -0.56
CLN3-201ENST00000333496 UBE2L5PA0A1B0GUS4 154 aa11.54□□□□□ -0.56
CLN3-201ENST00000333496 H3BMM0 161 aa11.54□□□□□ -0.56
CLN3-201ENST00000333496 ISLRO14498 428 aa11.54□□□□□ -0.56
CLN3-201ENST00000333496 FHITP49789 147 aa11.54□□□□□ -0.56
CLN3-201ENST00000333496 AKR1C8PQ5T2L2 129 aa11.54□□□□□ -0.56
CLN3-201ENST00000333496 RXFP4Q8TDU9 374 aa11.54□□□□□ -0.56
CLN3-201ENST00000333496 GPR82Q96P67 336 aa11.54□□□□□ -0.56
CLN3-201ENST00000333496 BIN3Q9NQY0 253 aa11.54□□□□□ -0.56
CLN3-201ENST00000333496 S100A7P31151 101 aa11.53□□□□□ -0.56
CLN3-201ENST00000333496 ID1P41134 155 aa11.53□□□□□ -0.56
CLN3-201ENST00000333496 RNF212Q495C1 297 aa11.53□□□□□ -0.56
CLN3-201ENST00000333496 MORN3Q6PF18 240 aaPredicted RBP11.53□□□□□ -0.56
CLN3-201ENST00000333496 TMEM37Q8WXS4 190 aa11.53□□□□□ -0.56
CLN3-201ENST00000333496 C20orf173Q96LM9 149 aa11.53□□□□□ -0.56
CLN3-201ENST00000333496 RARRES2Q99969 163 aa11.53□□□□□ -0.56
CLN3-201ENST00000333496 WDR61Q9GZS3 305 aaKnown RBP11.53□□□□□ -0.56
CLN3-201ENST00000333496 TENM2Q9NT68 2774 aa11.53□□□□□ -0.56
CLN3-201ENST00000333496 DYNC2H1Q8NCM8 4307 aaKnown RBP11.53□□□□□ -0.56
CLN3-201ENST00000333496 COLCA2A8K830 154 aa11.53□□□□□ -0.56
CLN3-201ENST00000333496 HLA-DRB4P13762 266 aa11.53□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 121.6 ms