RNA–Protein interactions for RNA: ENST00000323668.11

TCOF1-201, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene TCOF1, Length 4,832 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-201ENST00000323668 WIPF2Q8TF74 440 aaPredicted RBP11.83□□□□□ -0.52
TCOF1-201ENST00000323668 ZFHX2Q9C0A1 2572 aaPredicted RBP11.83□□□□□ -0.52
TCOF1-201ENST00000323668 E7EQL1 145 aa11.83□□□□□ -0.52
TCOF1-201ENST00000323668 SH2D1AO60880 128 aa11.83□□□□□ -0.52
TCOF1-201ENST00000323668 A0A1W2PNU3 283 aaPredicted RBP11.83□□□□□ -0.52
TCOF1-201ENST00000323668 DGAT2L7PQ6IED9 249 aa11.83□□□□□ -0.52
TCOF1-201ENST00000323668 IGFL3Q6UXB1 125 aa11.83□□□□□ -0.52
TCOF1-201ENST00000323668 DPM2O94777 84 aa11.83□□□□□ -0.52
TCOF1-201ENST00000323668 EVI2AP22794 236 aa11.83□□□□□ -0.52
TCOF1-201ENST00000323668 SSBP2P81877 361 aaPredicted RBP11.83□□□□□ -0.52
TCOF1-201ENST00000323668 CD5LO43866 347 aa11.82□□□□□ -0.52
TCOF1-201ENST00000323668 IFI27P40305 119 aaPredicted RBP11.82□□□□□ -0.52
TCOF1-201ENST00000323668 FXYD7P58549 80 aa11.82□□□□□ -0.52
TCOF1-201ENST00000323668 Q8TAT8 98 aa11.82□□□□□ -0.52
TCOF1-201ENST00000323668 TECTAO75443 2155 aa11.82□□□□□ -0.52
TCOF1-201ENST00000323668 PDE6HQ13956 83 aa11.82□□□□□ -0.52
TCOF1-201ENST00000323668 KIR2DL4Q99706 377 aa11.82□□□□□ -0.52
TCOF1-201ENST00000323668 TRBV19A0A075B6N1 114 aa11.82□□□□□ -0.52
TCOF1-201ENST00000323668 H3BVH4 76 aa11.82□□□□□ -0.52
TCOF1-201ENST00000323668 COL8A2P25067 703 aa11.82□□□□□ -0.52
TCOF1-201ENST00000323668 ASIPP42127 132 aa11.82□□□□□ -0.52
TCOF1-201ENST00000323668 DAZAP2Q15038 168 aaPredicted RBP11.82□□□□□ -0.52
TCOF1-201ENST00000323668 DKK4Q9UBT3 224 aa11.82□□□□□ -0.52
TCOF1-201ENST00000323668 KLRB1Q12918 225 aa11.81□□□□□ -0.52
TCOF1-201ENST00000323668 NHP2Q9NX24 153 aaKnown RBP11.81□□□□□ -0.52
TCOF1-201ENST00000323668 IGHV3OR16-10A0A075B7F0 116 aa11.81□□□□□ -0.52
TCOF1-201ENST00000323668 IGHV1-24A0A0C4DH33 117 aa11.81□□□□□ -0.52
TCOF1-201ENST00000323668 PPP1R17O96001 155 aa11.81□□□□□ -0.52
TCOF1-201ENST00000323668 KLRD1Q13241 179 aa11.81□□□□□ -0.52
TCOF1-201ENST00000323668 LY6EQ16553 131 aa11.81□□□□□ -0.52
TCOF1-201ENST00000323668 IGKV1OR2-108A0A075B7D4 117 aa11.81□□□□□ -0.52
TCOF1-201ENST00000323668 FAM106AQ4KMX7 169 aa11.81□□□□□ -0.52
TCOF1-201ENST00000323668 FAM159AQ6UWV7 190 aa11.81□□□□□ -0.52
TCOF1-201ENST00000323668 LRP4O75096 1905 aa11.81□□□□□ -0.52
TCOF1-201ENST00000323668 NOTCH3Q9UM47 2321 aa11.81□□□□□ -0.52
TCOF1-201ENST00000323668 EBLN2Q6P2I7 272 aa11.81□□□□□ -0.52
TCOF1-201ENST00000323668 FRMD6-AS1P0C7T7 363 aa11.8□□□□□ -0.52
TCOF1-201ENST00000323668 C15orf32Q32M92 178 aa11.8□□□□□ -0.52
TCOF1-201ENST00000323668 MORN5Q5VZ52 161 aa11.8□□□□□ -0.52
TCOF1-201ENST00000323668 TMEM75Q8N9X5 138 aa11.8□□□□□ -0.52
TCOF1-201ENST00000323668 NDUFA3O95167 84 aa11.8□□□□□ -0.52
TCOF1-201ENST00000323668 SFTPCP11686 197 aa11.8□□□□□ -0.52
TCOF1-201ENST00000323668 CR1LQ2VPA4 569 aa11.8□□□□□ -0.52
TCOF1-201ENST00000323668 KMT2EQ8IZD2 1858 aa11.8□□□□□ -0.52
TCOF1-201ENST00000323668 HAX1O00165 279 aa11.8□□□□□ -0.52
TCOF1-201ENST00000323668 IGKCP01834 107 aa11.8□□□□□ -0.52
TCOF1-201ENST00000323668 SRSF1Q07955 248 aaKnown RBP eCLIP11.8□□□□□ -0.52
TCOF1-201ENST00000323668 CLEC2AQ6UVW9 174 aa11.8□□□□□ -0.52
TCOF1-201ENST00000323668 IGLC1P0CG04 106 aa11.8□□□□□ -0.52
TCOF1-201ENST00000323668 MAJINQ3KP22 176 aa11.8□□□□□ -0.52
TCOF1-201ENST00000323668 SYT8Q8NBV8 401 aa11.8□□□□□ -0.52
TCOF1-201ENST00000323668 TMEM14CQ9P0S9 112 aa11.8□□□□□ -0.52
TCOF1-201ENST00000323668 THBDP07204 575 aa11.79□□□□□ -0.52
TCOF1-201ENST00000323668 ESDP10768 282 aa11.79□□□□□ -0.52
TCOF1-201ENST00000323668 LINC01559Q495D7 138 aa11.79□□□□□ -0.52
TCOF1-201ENST00000323668 DPF1Q92782 380 aa11.79□□□□□ -0.52
TCOF1-201ENST00000323668 NAA38Q9BRA0 125 aaKnown RBP11.79□□□□□ -0.52
TCOF1-201ENST00000323668 BDP1A6H8Y1 2624 aa11.79□□□□□ -0.52
TCOF1-201ENST00000323668 KLF5Q13887 457 aaPredicted RBP11.79□□□□□ -0.52
TCOF1-201ENST00000323668 IGFL2Q6UWQ7 119 aa11.79□□□□□ -0.52
TCOF1-201ENST00000323668 VMO1Q7Z5L0 202 aa11.79□□□□□ -0.52
TCOF1-201ENST00000323668 OR5A1Q8NGJ0 315 aa11.79□□□□□ -0.52
TCOF1-201ENST00000323668 FAM167A-AS1Q96KT0 104 aa11.79□□□□□ -0.52
TCOF1-201ENST00000323668 IGLC7A0M8Q6 106 aa11.79□□□□□ -0.52
TCOF1-201ENST00000323668 OOSP1A8MZH6 123 aa11.79□□□□□ -0.52
TCOF1-201ENST00000323668 RPL13AP40429 203 aaKnown RBP11.79□□□□□ -0.52
TCOF1-201ENST00000323668 SMPXQ9UHP9 88 aa11.79□□□□□ -0.52
TCOF1-201ENST00000323668 BPTFQ12830 3046 aa11.79□□□□□ -0.52
TCOF1-201ENST00000323668 WT1P19544 449 aaPredicted RBP11.78□□□□□ -0.52
TCOF1-201ENST00000323668 IGFL4Q6B9Z1 124 aa11.78□□□□□ -0.52
TCOF1-201ENST00000323668 RAXQ9Y2V3 346 aa11.78□□□□□ -0.52
TCOF1-201ENST00000323668 A0A0G2JLM5 398 aa11.78□□□□□ -0.52
TCOF1-201ENST00000323668 TMEM213A2RRL7 107 aa11.78□□□□□ -0.52
TCOF1-201ENST00000323668 SMKR1H3BMG3 65 aa11.78□□□□□ -0.52
TCOF1-201ENST00000323668 FAM74A4Q5TZK3 123 aa11.78□□□□□ -0.52
TCOF1-201ENST00000323668 PATE2Q6UY27 113 aa11.78□□□□□ -0.52
TCOF1-201ENST00000323668 EIF4EBP1Q13541 118 aaPredicted RBP11.78□□□□□ -0.52
TCOF1-201ENST00000323668 ARFGEF3Q5TH69 2177 aa11.78□□□□□ -0.52
TCOF1-201ENST00000323668 FAM104BQ5XKR9 115 aa11.77□□□□□ -0.52
TCOF1-201ENST00000323668 ZNF562Q6V9R5 426 aa11.77□□□□□ -0.52
TCOF1-201ENST00000323668 IGF2BP2-AS1Q96M15 143 aa11.77□□□□□ -0.52
TCOF1-201ENST00000323668 SELENOKQ9Y6D0 94 aa11.77□□□□□ -0.52
TCOF1-201ENST00000323668 LTAP01374 205 aa11.77□□□□□ -0.52
TCOF1-201ENST00000323668 MEGF9Q9H1U4 602 aa11.77□□□□□ -0.52
TCOF1-201ENST00000323668 KAAG1Q9UBP8 84 aa11.77□□□□□ -0.52
TCOF1-201ENST00000323668 GAGE12BA1L429 117 aa11.77□□□□□ -0.53
TCOF1-201ENST00000323668 M0R1W7 72 aa11.77□□□□□ -0.53
TCOF1-201ENST00000323668 LY6HO94772 140 aa11.77□□□□□ -0.53
TCOF1-201ENST00000323668 MSMPQ1L6U9 139 aa11.77□□□□□ -0.53
TCOF1-201ENST00000323668 MINOS1Q5TGZ0 78 aa11.77□□□□□ -0.53
TCOF1-201ENST00000323668 BCL6BQ8N143 479 aaPredicted RBP11.77□□□□□ -0.53
TCOF1-201ENST00000323668 MRPL16Q9NX20 251 aaKnown RBP11.77□□□□□ -0.53
TCOF1-201ENST00000323668 MINOS1-NBL1R4GNA1 71 aa11.77□□□□□ -0.53
TCOF1-201ENST00000323668 ANKHD1Q8IWZ3 2542 aaKnown RBP11.77□□□□□ -0.53
TCOF1-201ENST00000323668 WISP2O76076 250 aa11.76□□□□□ -0.53
TCOF1-201ENST00000323668 PRTN3P24158 256 aa11.76□□□□□ -0.53
TCOF1-201ENST00000323668 TMEM170BQ5T4T1 132 aa11.76□□□□□ -0.53
TCOF1-201ENST00000323668 C8orf31Q8N9H6 132 aa11.76□□□□□ -0.53
TCOF1-201ENST00000323668 LGALS3P17931 250 aaKnown RBP11.76□□□□□ -0.53
TCOF1-201ENST00000323668 SAMD5Q5TGI4 173 aa11.76□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 79.1 ms