RNA–Protein interactions for RNA: ENST00000296581.10

LSM6-201, Transcript of LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM6, Length 2,259 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM6-201ENST00000296581 IMMP2LQ96T52 175 aa12.12□□□□□ -0.47
LSM6-201ENST00000296581 MRPL27Q9P0M9 148 aaKnown RBP12.12□□□□□ -0.47
LSM6-201ENST00000296581 COX11Q9Y6N1 276 aa12.12□□□□□ -0.47
LSM6-201ENST00000296581 BRI3O95415 125 aa12.12□□□□□ -0.47
LSM6-201ENST00000296581 LYZP61626 148 aa12.12□□□□□ -0.47
LSM6-201ENST00000296581 ZNF580Q9UK33 172 aa12.12□□□□□ -0.47
LSM6-201ENST00000296581 HIGD1AQ9Y241 93 aa12.12□□□□□ -0.47
LSM6-201ENST00000296581 CSMD1Q96PZ7 3565 aa12.11□□□□□ -0.47
LSM6-201ENST00000296581 WI2-2373I1.2A0A1W2PRP0 233 aa12.11□□□□□ -0.47
LSM6-201ENST00000296581 F6UZH7 168 aa12.11□□□□□ -0.47
LSM6-201ENST00000296581 SMAD7O15105 426 aaKnown RBP12.11□□□□□ -0.47
LSM6-201ENST00000296581 NPPCP23582 126 aa12.11□□□□□ -0.47
LSM6-201ENST00000296581 TMEM256Q8N2U0 113 aa12.11□□□□□ -0.47
LSM6-201ENST00000296581 ZNF491Q8N8L2 437 aa12.11□□□□□ -0.47
LSM6-201ENST00000296581 ZNF738Q8NE65 137 aa12.11□□□□□ -0.47
LSM6-201ENST00000296581 CLUHP3Q96NS8 147 aa12.11□□□□□ -0.47
LSM6-201ENST00000296581 SCGB2A1O75556 95 aa12.11□□□□□ -0.47
LSM6-201ENST00000296581 IGHV3-23P01764 117 aa12.11□□□□□ -0.47
LSM6-201ENST00000296581 CTSGP08311 255 aa12.11□□□□□ -0.47
LSM6-201ENST00000296581 OR10J4P0C629 311 aa12.11□□□□□ -0.47
LSM6-201ENST00000296581 CD33P20138 364 aa12.11□□□□□ -0.47
LSM6-201ENST00000296581 PPIFP30405 207 aaKnown RBP12.11□□□□□ -0.47
LSM6-201ENST00000296581 GALR1P47211 349 aa12.11□□□□□ -0.47
LSM6-201ENST00000296581 Q6ZS46 218 aa12.11□□□□□ -0.47
LSM6-201ENST00000296581 Q6ZVH6 145 aa12.11□□□□□ -0.47
LSM6-201ENST00000296581 TEX29Q8N6K0 151 aa12.11□□□□□ -0.47
LSM6-201ENST00000296581 STXBP6Q8NFX7 210 aa12.11□□□□□ -0.47
LSM6-201ENST00000296581 PAXXQ9BUH6 204 aa12.11□□□□□ -0.47
LSM6-201ENST00000296581 LINC00527Q9UJ94 153 aa12.11□□□□□ -0.47
LSM6-201ENST00000296581 RNF24Q9Y225 148 aa12.11□□□□□ -0.47
LSM6-201ENST00000296581 CCDC168Q8NDH2 2452 aa12.1□□□□□ -0.47
LSM6-201ENST00000296581 NUPR1O60356 82 aa12.1□□□□□ -0.47
LSM6-201ENST00000296581 UBE2L3P68036 154 aaKnown RBP12.1□□□□□ -0.47
LSM6-201ENST00000296581 OCIAD2Q56VL3 154 aa12.1□□□□□ -0.47
LSM6-201ENST00000296581 Q6ZWC4 215 aa12.1□□□□□ -0.47
LSM6-201ENST00000296581 RNF125Q96EQ8 232 aa12.1□□□□□ -0.47
LSM6-201ENST00000296581 PARLQ9H300 379 aa12.1□□□□□ -0.47
LSM6-201ENST00000296581 VPREB3Q9UKI3 123 aa12.1□□□□□ -0.47
LSM6-201ENST00000296581 A0A1B0GUS0 222 aa12.09□□□□□ -0.47
LSM6-201ENST00000296581 OR2T8A6NH00 312 aa12.09□□□□□ -0.47
LSM6-201ENST00000296581 H3BUA1 57 aa12.09□□□□□ -0.47
LSM6-201ENST00000296581 FXYD5Q96DB9 178 aa12.09□□□□□ -0.47
LSM6-201ENST00000296581 OR5B12Q96R08 314 aa12.09□□□□□ -0.47
LSM6-201ENST00000296581 ZFHX3Q15911 3703 aa12.09□□□□□ -0.47
LSM6-201ENST00000296581 TEX15Q9BXT5 2789 aa12.09□□□□□ -0.47
LSM6-201ENST00000296581 A0A1W2PRE2 83 aa12.09□□□□□ -0.47
LSM6-201ENST00000296581 FAM223BA6NKX1 122 aa12.09□□□□□ -0.47
LSM6-201ENST00000296581 PYYP10082 97 aa12.09□□□□□ -0.47
LSM6-201ENST00000296581 ADMP35318 185 aa12.09□□□□□ -0.47
LSM6-201ENST00000296581 KRTAP1-1Q07627 177 aa12.09□□□□□ -0.47
LSM6-201ENST00000296581 FAM223AQ8IWN6 122 aa12.09□□□□□ -0.47
LSM6-201ENST00000296581 EEF1AKMT3Q96AZ1 226 aa12.09□□□□□ -0.47
LSM6-201ENST00000296581 RPUSD4Q96CM3 377 aaKnown RBP12.09□□□□□ -0.47
LSM6-201ENST00000296581 ATP6V0BQ99437 205 aa12.09□□□□□ -0.47
LSM6-201ENST00000296581 SMIM7Q9BQ49 75 aa12.09□□□□□ -0.47
LSM6-201ENST00000296581 SLC25A39Q9BZJ4 359 aaPredicted RBP12.09□□□□□ -0.47
LSM6-201ENST00000296581 LAMTOR2Q9Y2Q5 125 aa12.09□□□□□ -0.47
LSM6-201ENST00000296581 ITPR2Q14571 2701 aa12.09□□□□□ -0.47
LSM6-201ENST00000296581 IL4P05112 153 aa12.08□□□□□ -0.48
LSM6-201ENST00000296581 ADIRFQ15847 76 aa12.08□□□□□ -0.48
LSM6-201ENST00000296581 C11orf52Q96A22 123 aa12.08□□□□□ -0.48
LSM6-201ENST00000296581 CCDC140Q96MF4 163 aa12.08□□□□□ -0.48
LSM6-201ENST00000296581 CHRDL1Q9BU40 450 aa12.08□□□□□ -0.48
LSM6-201ENST00000296581 CST9LQ9H4G1 147 aa12.08□□□□□ -0.48
LSM6-201ENST00000296581 TRBV7-1A0A0A6YYK4 115 aa12.08□□□□□ -0.48
LSM6-201ENST00000296581 TYMSP04818 313 aa12.08□□□□□ -0.48
LSM6-201ENST00000296581 GP9P14770 177 aa12.08□□□□□ -0.48
LSM6-201ENST00000296581 ZNF414Q96IQ9 312 aa12.08□□□□□ -0.48
LSM6-201ENST00000296581 SHANK2-AS3Q9BTD1 123 aa12.08□□□□□ -0.48
LSM6-201ENST00000296581 NAT8Q9UHE5 227 aa12.08□□□□□ -0.48
LSM6-201ENST00000296581 H3BRN7 92 aa12.07□□□□□ -0.48
LSM6-201ENST00000296581 H7BYZ3 331 aa12.07□□□□□ -0.48
LSM6-201ENST00000296581 NBEAP1P0C6P0 100 aa12.07□□□□□ -0.48
LSM6-201ENST00000296581 CFHR3Q02985 330 aa12.07□□□□□ -0.48
LSM6-201ENST00000296581 ATP5G2Q06055 141 aa12.07□□□□□ -0.48
LSM6-201ENST00000296581 TMEM14CQ9P0S9 112 aa12.07□□□□□ -0.48
LSM6-201ENST00000296581 ZNF320A2RRD8 509 aa12.07□□□□□ -0.48
LSM6-201ENST00000296581 CD5LO43866 347 aa12.07□□□□□ -0.48
LSM6-201ENST00000296581 GPR183P32249 361 aa12.07□□□□□ -0.48
LSM6-201ENST00000296581 CMTM2Q8TAZ6 248 aa12.07□□□□□ -0.48
LSM6-201ENST00000296581 SCO2A0A1W2PP80 73 aa12.06□□□□□ -0.48
LSM6-201ENST00000296581 GGTLC3B5MD39 225 aa12.06□□□□□ -0.48
LSM6-201ENST00000296581 HOXA3O43365 443 aaPredicted RBP12.06□□□□□ -0.48
LSM6-201ENST00000296581 NDUFB4O95168 129 aa12.06□□□□□ -0.48
LSM6-201ENST00000296581 TRGV3P03979 118 aa12.06□□□□□ -0.48
LSM6-201ENST00000296581 CLEC3BP05452 202 aa12.06□□□□□ -0.48
LSM6-201ENST00000296581 OR4B1Q8NGF8 309 aa12.06□□□□□ -0.48
LSM6-201ENST00000296581 SMIM12Q96EX1 92 aa12.06□□□□□ -0.48
LSM6-201ENST00000296581 ZNF469Q96JG9 3925 aaPredicted RBP12.06□□□□□ -0.48
LSM6-201ENST00000296581 IGLV1-40P01703 118 aa12.06□□□□□ -0.48
LSM6-201ENST00000296581 UQCR10Q9UDW1 63 aa12.06□□□□□ -0.48
LSM6-201ENST00000296581 FLNAP21333 2647 aaKnown RBP12.05□□□□□ -0.48
LSM6-201ENST00000296581 HNRNPA3P51991 378 aaKnown RBP12.05□□□□□ -0.48
LSM6-201ENST00000296581 CLEC19AQ6UXS0 136 aa12.05□□□□□ -0.48
LSM6-201ENST00000296581 S100A7AQ86SG5 101 aa12.05□□□□□ -0.48
LSM6-201ENST00000296581 FASNP49327 2511 aaKnown RBP12.04□□□□□ -0.48
LSM6-201ENST00000296581 CTRLP40313 264 aa12.04□□□□□ -0.48
LSM6-201ENST00000296581 TPPP2P59282 170 aa12.04□□□□□ -0.48
LSM6-201ENST00000296581 RPS20P60866 119 aaKnown RBP12.04□□□□□ -0.48
LSM6-201ENST00000296581 USMG5Q96IX5 58 aa12.04□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 52.9 ms