RNA–Protein interactions for RNA: ENST00000287008.7

PCDH1-201, Transcript of protocadherin 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene PCDH1, Length 4,793 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1-201ENST00000287008 TRAV8-1A0A0A6YYK1 113 aa14.94□□□□□ -0.02
PCDH1-201ENST00000287008 SNAI2O43623 268 aa14.94□□□□□ -0.02
PCDH1-201ENST00000287008 PLP1P60201 277 aa14.94□□□□□ -0.02
PCDH1-201ENST00000287008 TMEM170AQ8WVE7 144 aa14.94□□□□□ -0.02
PCDH1-201ENST00000287008 MRPL16Q9NX20 251 aaKnown RBP14.94□□□□□ -0.02
PCDH1-201ENST00000287008 ABCA2Q9BZC7 2435 aa14.94□□□□□ -0.02
PCDH1-201ENST00000287008 LINC01619G3V211 115 aa14.94□□□□□ -0.02
PCDH1-201ENST00000287008 SHANK2-AS3Q9BTD1 123 aa14.94□□□□□ -0.02
PCDH1-201ENST00000287008 KAAG1Q9UBP8 84 aa14.94□□□□□ -0.02
PCDH1-201ENST00000287008 SMIM13P0DJ93 91 aa14.94□□□□□ -0.02
PCDH1-201ENST00000287008 GRNP28799 593 aaKnown RBP14.94□□□□□ -0.02
PCDH1-201ENST00000287008 GNB1LQ9BYB4 327 aa14.94□□□□□ -0.02
PCDH1-201ENST00000287008 IGHV3-73A0A0B4J1V6 119 aa14.93□□□□□ -0.02
PCDH1-201ENST00000287008 PDE6HQ13956 83 aa14.93□□□□□ -0.02
PCDH1-201ENST00000287008 TMEM249Q2WGJ8 235 aa14.93□□□□□ -0.02
PCDH1-201ENST00000287008 ATRAIDQ6UW56 229 aa14.93□□□□□ -0.02
PCDH1-201ENST00000287008 C1QL4Q86Z23 238 aa14.93□□□□□ -0.02
PCDH1-201ENST00000287008 DMRTC2Q8IXT2 367 aaPredicted RBP14.93□□□□□ -0.02
PCDH1-201ENST00000287008 CYTL1Q9NRR1 136 aa14.93□□□□□ -0.02
PCDH1-201ENST00000287008 RBMY1BA6NDE4 496 aaKnown RBP14.93□□□□□ -0.02
PCDH1-201ENST00000287008 RBMY1EA6NEQ0 496 aaKnown RBP14.93□□□□□ -0.02
PCDH1-201ENST00000287008 TCF21O43680 179 aa14.93□□□□□ -0.02
PCDH1-201ENST00000287008 APOMO95445 188 aa14.93□□□□□ -0.02
PCDH1-201ENST00000287008 RBMY1DP0C7P1 496 aaKnown RBP14.93□□□□□ -0.02
PCDH1-201ENST00000287008 RBMY1A1P0DJD3 496 aaKnown RBP14.93□□□□□ -0.02
PCDH1-201ENST00000287008 RBMY1CP0DJD4 496 aa14.93□□□□□ -0.02
PCDH1-201ENST00000287008 SRSF3P84103 164 aaKnown RBP14.93□□□□□ -0.02
PCDH1-201ENST00000287008 HELZP42694 1942 aaKnown RBP14.93□□□□□ -0.02
PCDH1-201ENST00000287008 RSPO1Q2MKA7 263 aaPredicted RBP14.93□□□□□ -0.02
PCDH1-201ENST00000287008 NLRC5Q86WI3 1866 aa14.93□□□□□ -0.02
PCDH1-201ENST00000287008 IGF2RP11717 2491 aa14.93□□□□□ -0.02
PCDH1-201ENST00000287008 PLXNA4Q9HCM2 1894 aa14.93□□□□□ -0.02
PCDH1-201ENST00000287008 DEFB130BP0DP73 79 aa14.93□□□□□ -0.02
PCDH1-201ENST00000287008 DEFB130AP0DP74 79 aa14.93□□□□□ -0.02
PCDH1-201ENST00000287008 C17orf58Q2M2W7 97 aa14.93□□□□□ -0.02
PCDH1-201ENST00000287008 CFPP27918 469 aa14.92□□□□□ -0.02
PCDH1-201ENST00000287008 YPEL3P61236 119 aaPredicted RBP14.92□□□□□ -0.02
PCDH1-201ENST00000287008 RNF182Q8N6D2 247 aa14.92□□□□□ -0.02
PCDH1-201ENST00000287008 C1orf147Q96MC9 270 aaPredicted RBP14.92□□□□□ -0.02
PCDH1-201ENST00000287008 ZNF833PQ6ZTB9 187 aa14.92□□□□□ -0.02
PCDH1-201ENST00000287008 LYZL1Q6UWQ5 148 aa14.92□□□□□ -0.02
PCDH1-201ENST00000287008 TMEM14BQ9NUH8 114 aa14.92□□□□□ -0.02
PCDH1-201ENST00000287008 ADMP35318 185 aa14.92□□□□□ -0.02
PCDH1-201ENST00000287008 LINC00469Q8N7U9 141 aa14.92□□□□□ -0.02
PCDH1-201ENST00000287008 DPH3P1Q9H4G8 78 aa14.92□□□□□ -0.02
PCDH1-201ENST00000287008 DPM2O94777 84 aa14.91□□□□□ -0.02
PCDH1-201ENST00000287008 PRB1P04280 392 aa14.91□□□□□ -0.02
PCDH1-201ENST00000287008 LINC01551Q86U37 167 aa14.91□□□□□ -0.02
PCDH1-201ENST00000287008 VOPP1Q96AW1 172 aa14.91□□□□□ -0.02
PCDH1-201ENST00000287008 NDUFA4L2Q9NRX3 87 aa14.91□□□□□ -0.02
PCDH1-201ENST00000287008 HIVEP3Q5T1R4 2406 aa14.91□□□□□ -0.02
PCDH1-201ENST00000287008 IFI27L1Q96BM0 104 aa14.91□□□□□ -0.02
PCDH1-201ENST00000287008 GHRHP01286 108 aa14.9□□□□□ -0.02
PCDH1-201ENST00000287008 RSPO3Q9BXY4 272 aaPredicted RBP14.9□□□□□ -0.02
PCDH1-201ENST00000287008 DERL1Q9BUN8 251 aa14.9□□□□□ -0.02
PCDH1-201ENST00000287008 TSC2P49815 1807 aa14.9□□□□□ -0.02
PCDH1-201ENST00000287008 SH2D1AO60880 128 aa14.9□□□□□ -0.02
PCDH1-201ENST00000287008 C1orf122Q6ZSJ8 110 aa14.9□□□□□ -0.02
PCDH1-201ENST00000287008 ST6GALNAC6Q969X2 333 aa14.9□□□□□ -0.02
PCDH1-201ENST00000287008 AMBPP02760 352 aa14.9□□□□□ -0.02
PCDH1-201ENST00000287008 NCR2O95944 276 aa14.89□□□□□ -0.03
PCDH1-201ENST00000287008 SHISA9B4DS77 424 aa14.89□□□□□ -0.03
PCDH1-201ENST00000287008 PLNP26678 52 aa14.89□□□□□ -0.03
PCDH1-201ENST00000287008 TMEM86BQ8N661 226 aa14.89□□□□□ -0.03
PCDH1-201ENST00000287008 XCL2Q9UBD3 114 aa14.89□□□□□ -0.03
PCDH1-201ENST00000287008 SLC25A20O43772 301 aa14.89□□□□□ -0.03
PCDH1-201ENST00000287008 CTAG1AP78358 180 aa14.89□□□□□ -0.03
PCDH1-201ENST00000287008 OR5A1Q8NGJ0 315 aa14.89□□□□□ -0.03
PCDH1-201ENST00000287008 TCTEX1D4Q5JR98 221 aa14.88□□□□□ -0.03
PCDH1-201ENST00000287008 C14orf178Q8N769 122 aaPredicted RBP14.88□□□□□ -0.03
PCDH1-201ENST00000287008 C22orf46C9J442 243 aa14.88□□□□□ -0.03
PCDH1-201ENST00000287008 MMP23AO75900 390 aa14.88□□□□□ -0.03
PCDH1-201ENST00000287008 ELANEP08246 267 aa14.88□□□□□ -0.03
PCDH1-201ENST00000287008 MST1LQ2TV78 715 aa14.88□□□□□ -0.03
PCDH1-201ENST00000287008 IL17RELQ6ZVW7 336 aa14.88□□□□□ -0.03
PCDH1-201ENST00000287008 TMEM242Q9NWH2 141 aa14.88□□□□□ -0.03
PCDH1-201ENST00000287008 TRBV24-1A0A075B6N3 115 aa14.87□□□□□ -0.03
PCDH1-201ENST00000287008 VCYO14598 125 aa14.87□□□□□ -0.03
PCDH1-201ENST00000287008 DMRT1Q9Y5R6 373 aa14.87□□□□□ -0.03
PCDH1-201ENST00000287008 PSCAO43653 123 aa14.87□□□□□ -0.03
PCDH1-201ENST00000287008 IGHV2-5P01817 119 aa14.87□□□□□ -0.03
PCDH1-201ENST00000287008 MCRIP2Q9BUT9 160 aaKnown RBP14.87□□□□□ -0.03
PCDH1-201ENST00000287008 LY96Q9Y6Y9 160 aa14.87□□□□□ -0.03
PCDH1-201ENST00000287008 SORL1Q92673 2214 aa14.87□□□□□ -0.03
PCDH1-201ENST00000287008 CKS1BP61024 79 aa14.87□□□□□ -0.03
PCDH1-201ENST00000287008 CHTOPQ9Y3Y2 248 aaKnown RBP14.87□□□□□ -0.03
PCDH1-201ENST00000287008 FOXL1Q12952 345 aa14.86□□□□□ -0.03
PCDH1-201ENST00000287008 LAGE3Q14657 143 aa14.86□□□□□ -0.03
PCDH1-201ENST00000287008 NIT1Q86X76 327 aa14.86□□□□□ -0.03
PCDH1-201ENST00000287008 CHCHD1Q96BP2 118 aaKnown RBP14.86□□□□□ -0.03
PCDH1-201ENST00000287008 A0A0U1RRA0 63 aa14.86□□□□□ -0.03
PCDH1-201ENST00000287008 D6R8Y8 96 aa14.86□□□□□ -0.03
PCDH1-201ENST00000287008 SEC11AP67812 179 aa14.86□□□□□ -0.03
PCDH1-201ENST00000287008 DEFB113Q30KQ7 82 aa14.86□□□□□ -0.03
PCDH1-201ENST00000287008 PARD6GQ9BYG4 376 aaPredicted RBP14.86□□□□□ -0.03
PCDH1-201ENST00000287008 C1orf159Q96HA4 380 aa14.86□□□□□ -0.03
PCDH1-201ENST00000287008 KLF2Q9Y5W3 355 aaPredicted RBP14.86□□□□□ -0.03
PCDH1-201ENST00000287008 C15orf65H3BRN8 121 aa14.85□□□□□ -0.03
PCDH1-201ENST00000287008 HOXA3O43365 443 aaPredicted RBP14.85□□□□□ -0.03
PCDH1-201ENST00000287008 LINC01559Q495D7 138 aa14.85□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 69 ms