RNA–Protein interactions for RNA: ENST00000011700.10

VPS13D-201, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 10,969 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-201ENST00000011700 TNRC6BQ9UPQ9 1833 aaKnown RBP5.02□□□□□ -1.61
VPS13D-201ENST00000011700 APELAP0DMC3 54 aa5.02□□□□□ -1.61
VPS13D-201ENST00000011700 LCN12Q6JVE5 192 aa5.02□□□□□ -1.61
VPS13D-201ENST00000011700 MESP1Q9BRJ9 268 aa5.02□□□□□ -1.61
VPS13D-201ENST00000011700 RSPO3Q9BXY4 272 aaPredicted RBP5.02□□□□□ -1.61
VPS13D-201ENST00000011700 FNDC4Q9H6D8 234 aaPredicted RBP5.02□□□□□ -1.61
VPS13D-201ENST00000011700 B4DSR2 109 aa5.02□□□□□ -1.61
VPS13D-201ENST00000011700 J3QLI3 93 aa5.02□□□□□ -1.61
VPS13D-201ENST00000011700 ADMP35318 185 aa5.02□□□□□ -1.61
VPS13D-201ENST00000011700 C8orf31Q8N9H6 132 aa5.02□□□□□ -1.61
VPS13D-201ENST00000011700 IMMP1LQ96LU5 166 aa5.02□□□□□ -1.61
VPS13D-201ENST00000011700 CRLF1O75462 422 aa5.01□□□□□ -1.61
VPS13D-201ENST00000011700 TREML4Q6UXN2 200 aa5.01□□□□□ -1.61
VPS13D-201ENST00000011700 RNASE7Q9H1E1 156 aaKnown RBP5.01□□□□□ -1.61
VPS13D-201ENST00000011700 IGHV3OR16-12A0A075B7B8 117 aa5.01□□□□□ -1.61
VPS13D-201ENST00000011700 PRSS46E5RG02 174 aa5.01□□□□□ -1.61
VPS13D-201ENST00000011700 ATOX1O00244 68 aa5.01□□□□□ -1.61
VPS13D-201ENST00000011700 GATA4P43694 442 aa5.01□□□□□ -1.61
VPS13D-201ENST00000011700 TRBV25-1A0A075B6N4 114 aa5.01□□□□□ -1.61
VPS13D-201ENST00000011700 H0YGX0 51 aa5.01□□□□□ -1.61
VPS13D-201ENST00000011700 FOXG1P55316 489 aaPredicted RBP5.01□□□□□ -1.61
VPS13D-201ENST00000011700 SLC22A18ASQ8N1D0 253 aa5.01□□□□□ -1.61
VPS13D-201ENST00000011700 RNF126Q9BV68 326 aa5.01□□□□□ -1.61
VPS13D-201ENST00000011700 KIR3DS1Q14943 382 aa5.01□□□□□ -1.61
VPS13D-201ENST00000011700 HRKO00198 91 aa5.01□□□□□ -1.61
VPS13D-201ENST00000011700 SMAD7O15105 426 aaKnown RBP5.01□□□□□ -1.61
VPS13D-201ENST00000011700 YPEL3P61236 119 aaPredicted RBP5.01□□□□□ -1.61
VPS13D-201ENST00000011700 ZNRF1Q8ND25 227 aa5.01□□□□□ -1.61
VPS13D-201ENST00000011700 TRAV41A0A0B4J266 112 aa5.01□□□□□ -1.61
VPS13D-201ENST00000011700 PFN1P07737 140 aaKnown RBP5.01□□□□□ -1.61
VPS13D-201ENST00000011700 CCL4P13236 92 aa5.01□□□□□ -1.61
VPS13D-201ENST00000011700 ZNF493Q6ZR52 646 aa5.01□□□□□ -1.61
VPS13D-201ENST00000011700 C7orf69Q9H7B7 122 aa5.01□□□□□ -1.61
VPS13D-201ENST00000011700 C9orf118A6NHY6 69 aa5.01□□□□□ -1.61
VPS13D-201ENST00000011700 D6R8Y8 96 aa5.01□□□□□ -1.61
VPS13D-201ENST00000011700 OCIAD2Q56VL3 154 aa5.01□□□□□ -1.61
VPS13D-201ENST00000011700 PRIMA1Q86XR5 153 aa5.01□□□□□ -1.61
VPS13D-201ENST00000011700 PRO1854Q9UHT4 67 aa5.01□□□□□ -1.61
VPS13D-201ENST00000011700 HOXB3P14651 431 aaPredicted RBP5.01□□□□□ -1.61
VPS13D-201ENST00000011700 CD300EQ496F6 205 aaPredicted RBP5.01□□□□□ -1.61
VPS13D-201ENST00000011700 C11orf44Q8N8P7 122 aa5.01□□□□□ -1.61
VPS13D-201ENST00000011700 LOC105371267A0A1B0GV96 52 aa5□□□□□ -1.61
VPS13D-201ENST00000011700 ZNF561-AS1K7EIQ3 104 aa5□□□□□ -1.61
VPS13D-201ENST00000011700 NKAPP1Q8N9T2 125 aa5□□□□□ -1.61
VPS13D-201ENST00000011700 TCRAP04437 139 aa5□□□□□ -1.61
VPS13D-201ENST00000011700 NMSQ5H8A3 153 aa5□□□□□ -1.61
VPS13D-201ENST00000011700 ZNF474Q6S9Z5 364 aaPredicted RBP5□□□□□ -1.61
VPS13D-201ENST00000011700 A8MWP6 167 aa5□□□□□ -1.61
VPS13D-201ENST00000011700 C5orf64Q2M2E5 130 aa5□□□□□ -1.61
VPS13D-201ENST00000011700 FAM19A2Q8N3H0 131 aa5□□□□□ -1.61
VPS13D-201ENST00000011700 NUP35Q8NFH5 326 aa5□□□□□ -1.61
VPS13D-201ENST00000011700 RCHY1Q96PM5 261 aa5□□□□□ -1.61
VPS13D-201ENST00000011700 F8VRH5 84 aa5□□□□□ -1.61
VPS13D-201ENST00000011700 PIN1P1O15428 100 aa5□□□□□ -1.61
VPS13D-201ENST00000011700 RPL39P5Q59GN2 51 aa5□□□□□ -1.61
VPS13D-201ENST00000011700 PSCAO43653 123 aa5□□□□□ -1.61
VPS13D-201ENST00000011700 IGKV3-15P01624 115 aa5□□□□□ -1.61
VPS13D-201ENST00000011700 WIPF2Q8TF74 440 aaPredicted RBP5□□□□□ -1.61
VPS13D-201ENST00000011700 TMEM14BQ9NUH8 114 aa5□□□□□ -1.61
VPS13D-201ENST00000011700 EVI2AP22794 236 aa5□□□□□ -1.61
VPS13D-201ENST00000011700 PSG7Q13046 419 aa5□□□□□ -1.61
VPS13D-201ENST00000011700 LGALS9BQ3B8N2 356 aa5□□□□□ -1.61
VPS13D-201ENST00000011700 LGALS9CQ6DKI2 356 aa5□□□□□ -1.61
VPS13D-201ENST00000011700 AMN1Q8IY45 258 aa5□□□□□ -1.61
VPS13D-201ENST00000011700 WBP1Q96G27 269 aa5□□□□□ -1.61
VPS13D-201ENST00000011700 KLF2Q9Y5W3 355 aaPredicted RBP5□□□□□ -1.61
VPS13D-201ENST00000011700 LTBP2Q14767 1821 aa5□□□□□ -1.61
VPS13D-201ENST00000011700 CXCL5P42830 114 aa5□□□□□ -1.61
VPS13D-201ENST00000011700 TGIF1Q15583 401 aa5□□□□□ -1.61
VPS13D-201ENST00000011700 SUMO4Q6EEV6 95 aa5□□□□□ -1.61
VPS13D-201ENST00000011700 CLEC19AQ6UXS0 136 aa5□□□□□ -1.61
VPS13D-201ENST00000011700 SLC25A45Q8N413 288 aa5□□□□□ -1.61
VPS13D-201ENST00000011700 GATD1Q8NB37 220 aa5□□□□□ -1.61
VPS13D-201ENST00000011700 COLCA2A8K830 154 aa4.99□□□□□ -1.61
VPS13D-201ENST00000011700 EFNA4P52798 201 aa4.99□□□□□ -1.61
VPS13D-201ENST00000011700 IGHV1-69DA0A0B4J2H0 117 aa4.99□□□□□ -1.61
VPS13D-201ENST00000011700 RAMP3O60896 148 aa4.99□□□□□ -1.61
VPS13D-201ENST00000011700 MRPL53Q96EL3 112 aaKnown RBP4.99□□□□□ -1.61
VPS13D-201ENST00000011700 CITED2Q99967 270 aaPredicted RBP4.99□□□□□ -1.61
VPS13D-201ENST00000011700 PLA2G2FQ9BZM2 168 aa4.99□□□□□ -1.61
VPS13D-201ENST00000011700 JMJD7-PLA2G4BH0Y9G9 81 aa4.99□□□□□ -1.61
VPS13D-201ENST00000011700 TFPI2P48307 235 aa4.99□□□□□ -1.61
VPS13D-201ENST00000011700 NPC2P61916 151 aa4.99□□□□□ -1.61
VPS13D-201ENST00000011700 TFF3Q07654 80 aa4.99□□□□□ -1.61
VPS13D-201ENST00000011700 C1orf122Q6ZSJ8 110 aa4.99□□□□□ -1.61
VPS13D-201ENST00000011700 ZAR1Q86SH2 424 aa4.99□□□□□ -1.61
VPS13D-201ENST00000011700 GLRX5Q86SX6 157 aa4.99□□□□□ -1.61
VPS13D-201ENST00000011700 OCC1Q8TAD7 63 aa4.99□□□□□ -1.61
VPS13D-201ENST00000011700 DMRTC1Q5HYR2 192 aa4.99□□□□□ -1.61
VPS13D-201ENST00000011700 LY6G6FQ5SQ64 297 aa4.99□□□□□ -1.61
VPS13D-201ENST00000011700 COLCA1Q6ZS62 124 aa4.99□□□□□ -1.61
VPS13D-201ENST00000011700 ZCCHC24Q8N2G6 241 aaKnown RBP4.99□□□□□ -1.61
VPS13D-201ENST00000011700 SRXN1Q9BYN0 137 aa4.99□□□□□ -1.61
VPS13D-201ENST00000011700 C17orf98A8MV24 154 aa4.99□□□□□ -1.61
VPS13D-201ENST00000011700 SRRM4A7MD48 611 aaKnown RBP4.99□□□□□ -1.61
VPS13D-201ENST00000011700 MP68P56378 58 aa4.99□□□□□ -1.61
VPS13D-201ENST00000011700 COX8AP10176 69 aa4.99□□□□□ -1.61
VPS13D-201ENST00000011700 MIR17HGQ75NE6 70 aa4.99□□□□□ -1.61
VPS13D-201ENST00000011700 PRR13Q9NZ81 148 aa4.99□□□□□ -1.61
VPS13D-201ENST00000011700 IGHV2-26A0A0B4J1V2 119 aa4.98□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 66.4 ms