RNA–Protein interactions for RNA: ENST00000636147.1

CLN3-244, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 3,832 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-244ENST00000636147 PSG8Q9UQ74 426 aa8.93□□□□□ -0.98
CLN3-244ENST00000636147 USP34Q70CQ2 3546 aa8.93□□□□□ -0.98
CLN3-244ENST00000636147 H0YJW9 148 aa8.93□□□□□ -0.98
CLN3-244ENST00000636147 F2RL2O00254 374 aa8.93□□□□□ -0.98
CLN3-244ENST00000636147 DLX1P56177 255 aa8.93□□□□□ -0.98
CLN3-244ENST00000636147 CELSR3Q9NYQ7 3312 aa8.93□□□□□ -0.98
CLN3-244ENST00000636147 SS18L1O75177 396 aaPredicted RBP8.93□□□□□ -0.98
CLN3-244ENST00000636147 LOXL3P58215 753 aa8.93□□□□□ -0.98
CLN3-244ENST00000636147 PAX2Q02962 417 aa8.93□□□□□ -0.98
CLN3-244ENST00000636147 HSD52Q0P140 79 aa8.93□□□□□ -0.98
CLN3-244ENST00000636147 A0A1B0GWB2 263 aa8.92□□□□□ -0.98
CLN3-244ENST00000636147 C2orf70A6NJV1 201 aa8.92□□□□□ -0.98
CLN3-244ENST00000636147 HBDP02042 147 aa8.92□□□□□ -0.98
CLN3-244ENST00000636147 WT1-ASQ06250 92 aa8.92□□□□□ -0.98
CLN3-244ENST00000636147 ZNF503Q96F45 646 aa8.92□□□□□ -0.98
CLN3-244ENST00000636147 ZNF502Q8TBZ5 544 aa8.92□□□□□ -0.98
CLN3-244ENST00000636147 IGKV3-7A0A075B6H7 116 aa8.92□□□□□ -0.98
CLN3-244ENST00000636147 PRRG2O14669 202 aa8.92□□□□□ -0.98
CLN3-244ENST00000636147 TOMM40O96008 361 aa8.92□□□□□ -0.98
CLN3-244ENST00000636147 C17orf58Q2M2W7 97 aa8.92□□□□□ -0.98
CLN3-244ENST00000636147 SPRNQ5BIV9 151 aa8.92□□□□□ -0.98
CLN3-244ENST00000636147 FAM231DQ6ZW35 169 aa8.92□□□□□ -0.98
CLN3-244ENST00000636147 Q8N7P7 452 aa8.92□□□□□ -0.98
CLN3-244ENST00000636147 TMEM213A2RRL7 107 aa8.91□□□□□ -0.98
CLN3-244ENST00000636147 NPIPB5A8MRT5 1133 aa8.91□□□□□ -0.98
CLN3-244ENST00000636147 TMEM238C9JI98 176 aa8.91□□□□□ -0.98
CLN3-244ENST00000636147 FAM71F2Q6NXP2 309 aa8.91□□□□□ -0.98
CLN3-244ENST00000636147 LYZL1Q6UWQ5 148 aa8.91□□□□□ -0.98
CLN3-244ENST00000636147 GTSCR1Q86UQ5 136 aa8.91□□□□□ -0.98
CLN3-244ENST00000636147 OTORQ9NRC9 128 aa8.91□□□□□ -0.98
CLN3-244ENST00000636147 LEPP41159 167 aa8.91□□□□□ -0.98
CLN3-244ENST00000636147 SPANXN1Q5VSR9 72 aa8.91□□□□□ -0.98
CLN3-244ENST00000636147 FAM169BQ8N8A8 192 aa8.91□□□□□ -0.98
CLN3-244ENST00000636147 FXYD5Q96DB9 178 aa8.91□□□□□ -0.98
CLN3-244ENST00000636147 IGHV3-49A0A0A0MS15 119 aa8.91□□□□□ -0.98
CLN3-244ENST00000636147 TGFAP01135 160 aa8.91□□□□□ -0.98
CLN3-244ENST00000636147 IGLV2-8P01709 118 aa8.91□□□□□ -0.98
CLN3-244ENST00000636147 LGALS7P47929 136 aa8.91□□□□□ -0.98
CLN3-244ENST00000636147 DIAPH2-AS1Q14236 149 aa8.91□□□□□ -0.98
CLN3-244ENST00000636147 KLF17Q5JT82 389 aaPredicted RBP8.91□□□□□ -0.98
CLN3-244ENST00000636147 LCNL1Q6ZST4 164 aa8.91□□□□□ -0.98
CLN3-244ENST00000636147 SLC25A48Q6ZT89 311 aaKnown RBP8.91□□□□□ -0.98
CLN3-244ENST00000636147 SIGMAR1Q99720 223 aa8.91□□□□□ -0.98
CLN3-244ENST00000636147 CSTL1Q9H114 145 aa8.91□□□□□ -0.98
CLN3-244ENST00000636147 NGBQ9NPG2 151 aa8.91□□□□□ -0.98
CLN3-244ENST00000636147 LINC00312Q9Y6C7 94 aa8.91□□□□□ -0.98
CLN3-244ENST00000636147 KLK10O43240 276 aa8.9□□□□□ -0.98
CLN3-244ENST00000636147 IGKV3-15P01624 115 aa8.9□□□□□ -0.98
CLN3-244ENST00000636147 COX8AP10176 69 aa8.9□□□□□ -0.98
CLN3-244ENST00000636147 RPL7P18124 248 aaKnown RBP8.9□□□□□ -0.98
CLN3-244ENST00000636147 PSG3Q16557 428 aa8.9□□□□□ -0.98
CLN3-244ENST00000636147 ZNF788Q6ZQV5 615 aa8.9□□□□□ -0.98
CLN3-244ENST00000636147 Q8N976 141 aa8.9□□□□□ -0.98
CLN3-244ENST00000636147 IGF2BP2-AS1Q96M15 143 aa8.9□□□□□ -0.98
CLN3-244ENST00000636147 TPSG1Q9NRR2 321 aa8.9□□□□□ -0.98
CLN3-244ENST00000636147 A0A1W2PPI3 338 aa8.9□□□□□ -0.98
CLN3-244ENST00000636147 IGFL4Q6B9Z1 124 aa8.9□□□□□ -0.98
CLN3-244ENST00000636147 OR4X2Q8NGF9 303 aa8.9□□□□□ -0.98
CLN3-244ENST00000636147 PTPRSQ13332 1948 aa8.9□□□□□ -0.99
CLN3-244ENST00000636147 PPIAL4CA0A0B4J2A2 164 aa8.9□□□□□ -0.99
CLN3-244ENST00000636147 IGHV3-66A0A0C4DH42 116 aa8.9□□□□□ -0.99
CLN3-244ENST00000636147 A0A1B0GV72 72 aa8.9□□□□□ -0.99
CLN3-244ENST00000636147 NDUFA3O95167 84 aa8.9□□□□□ -0.99
CLN3-244ENST00000636147 IGHV1-46P01743 117 aa8.9□□□□□ -0.99
CLN3-244ENST00000636147 PPIAL4GP0DN37 164 aa8.9□□□□□ -0.99
CLN3-244ENST00000636147 MEF2CQ06413 473 aaPredicted RBP8.89□□□□□ -0.99
CLN3-244ENST00000636147 Q1RN00 199 aa8.89□□□□□ -0.99
CLN3-244ENST00000636147 C8orf46Q8TAG6 207 aa8.89□□□□□ -0.99
CLN3-244ENST00000636147 Q8TAT8 98 aa8.89□□□□□ -0.99
CLN3-244ENST00000636147 ZNF418Q8TF45 676 aaPredicted RBP8.89□□□□□ -0.99
CLN3-244ENST00000636147 FAM167A-AS1Q96KT0 104 aa8.89□□□□□ -0.99
CLN3-244ENST00000636147 ZFHX2Q9C0A1 2572 aaPredicted RBP8.89□□□□□ -0.99
CLN3-244ENST00000636147 H7C2G1 150 aa8.89□□□□□ -0.99
CLN3-244ENST00000636147 K7EMI3 77 aa8.89□□□□□ -0.99
CLN3-244ENST00000636147 TM4SF5O14894 197 aa8.89□□□□□ -0.99
CLN3-244ENST00000636147 SMAD7O15105 426 aaKnown RBP8.89□□□□□ -0.99
CLN3-244ENST00000636147 PATE2Q6UY27 113 aa8.89□□□□□ -0.99
CLN3-244ENST00000636147 Q86TA4 180 aa8.89□□□□□ -0.99
CLN3-244ENST00000636147 OR5A1Q8NGJ0 315 aa8.89□□□□□ -0.99
CLN3-244ENST00000636147 OR4A5Q8NH83 315 aa8.89□□□□□ -0.99
CLN3-244ENST00000636147 GTSF1Q8WW33 167 aa8.89□□□□□ -0.99
CLN3-244ENST00000636147 SLC25A39Q9BZJ4 359 aaPredicted RBP8.89□□□□□ -0.99
CLN3-244ENST00000636147 NDUFA4L2Q9NRX3 87 aa8.89□□□□□ -0.99
CLN3-244ENST00000636147 C9orf118A6NHY6 69 aa8.89□□□□□ -0.99
CLN3-244ENST00000636147 C19orf67A6NJJ6 358 aa8.89□□□□□ -0.99
CLN3-244ENST00000636147 FNDC10F2Z333 226 aa8.89□□□□□ -0.99
CLN3-244ENST00000636147 KLF5Q13887 457 aaPredicted RBP8.89□□□□□ -0.99
CLN3-244ENST00000636147 RPRMLQ8N4K4 120 aa8.89□□□□□ -0.99
CLN3-244ENST00000636147 TTC9CQ8N5M4 171 aa8.89□□□□□ -0.99
CLN3-244ENST00000636147 DEFB124Q8NES8 71 aa8.89□□□□□ -0.99
CLN3-244ENST00000636147 IGKV2-40A0A087WW87 121 aaPredicted RBP8.88□□□□□ -0.99
CLN3-244ENST00000636147 SPAARA0A1B0GVQ0 90 aa8.88□□□□□ -0.99
CLN3-244ENST00000636147 IGKV2D-40P01614 121 aaPredicted RBP8.88□□□□□ -0.99
CLN3-244ENST00000636147 BMI1P35226 326 aa8.88□□□□□ -0.99
CLN3-244ENST00000636147 C1orf229Q6ZS94 237 aaPredicted RBP8.88□□□□□ -0.99
CLN3-244ENST00000636147 PCP2Q8IVA1 136 aa8.88□□□□□ -0.99
CLN3-244ENST00000636147 TMEM133Q9H2Q1 129 aa8.88□□□□□ -0.99
CLN3-244ENST00000636147 NBEAQ8NFP9 2946 aa8.88□□□□□ -0.99
CLN3-244ENST00000636147 E7EUB6 86 aa8.88□□□□□ -0.99
CLN3-244ENST00000636147 K7ERJ3 54 aa8.88□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms