RNA–Protein interactions for RNA: ENST00000631023.2

CLN3-240, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-240ENST00000631023 UHRF2Q96PU4 802 aa15.28■□□□□ 0.04
CLN3-240ENST00000631023 RSG1Q9BU20 258 aa15.28■□□□□ 0.04
CLN3-240ENST00000631023 RETNQ9HD89 108 aa15.28■□□□□ 0.04
CLN3-240ENST00000631023 COX7A2P2O60397 106 aa15.27■□□□□ 0.03
CLN3-240ENST00000631023 RPL29P47914 159 aaKnown RBP15.27■□□□□ 0.03
CLN3-240ENST00000631023 PSMB3P49720 205 aa15.27■□□□□ 0.03
CLN3-240ENST00000631023 PATE2Q6UY27 113 aa15.27■□□□□ 0.03
CLN3-240ENST00000631023 OR11H7Q8NGC8 314 aa15.27■□□□□ 0.03
CLN3-240ENST00000631023 MBD2Q9UBB5 411 aa15.27■□□□□ 0.03
CLN3-240ENST00000631023 ISLRO14498 428 aa15.26■□□□□ 0.03
CLN3-240ENST00000631023 CLINT1Q14677 625 aa15.26■□□□□ 0.03
CLN3-240ENST00000631023 MIC13Q5XKP0 118 aa15.26■□□□□ 0.03
CLN3-240ENST00000631023 LINC00305Q7Z4B0 112 aa15.26■□□□□ 0.03
CLN3-240ENST00000631023 ASB13Q8WXK3 278 aa15.26■□□□□ 0.03
CLN3-240ENST00000631023 DNAJC4Q9NNZ3 241 aa15.26■□□□□ 0.03
CLN3-240ENST00000631023 TP53TG1Q9Y2A0 90 aa15.26■□□□□ 0.03
CLN3-240ENST00000631023 ATF4P18848 351 aaPredicted RBP15.25■□□□□ 0.03
CLN3-240ENST00000631023 RPL12P30050 165 aaKnown RBP15.25■□□□□ 0.03
CLN3-240ENST00000631023 PRR20EP86478 221 aa15.25■□□□□ 0.03
CLN3-240ENST00000631023 PRR20CP86479 221 aa15.25■□□□□ 0.03
CLN3-240ENST00000631023 PRR20DP86480 221 aa15.25■□□□□ 0.03
CLN3-240ENST00000631023 PRR20BP86481 221 aa15.25■□□□□ 0.03
CLN3-240ENST00000631023 PRR20AP86496 221 aa15.25■□□□□ 0.03
CLN3-240ENST00000631023 OPCMLQ14982 345 aa15.25■□□□□ 0.03
CLN3-240ENST00000631023 ACTL10Q5JWF8 245 aa15.25■□□□□ 0.03
CLN3-240ENST00000631023 C10orf113Q5VZT2 155 aa15.25■□□□□ 0.03
CLN3-240ENST00000631023 OR1L4Q8NGR5 311 aa15.25■□□□□ 0.03
CLN3-240ENST00000631023 C16orf92Q96LL3 132 aa15.25■□□□□ 0.03
CLN3-240ENST00000631023 LINC00052Q96N35 136 aa15.25■□□□□ 0.03
CLN3-240ENST00000631023 PFDN5Q99471 154 aa15.25■□□□□ 0.03
CLN3-240ENST00000631023 OVOL2Q9BRP0 275 aa15.25■□□□□ 0.03
CLN3-240ENST00000631023 KNCNA6PVL3 124 aa15.24■□□□□ 0.03
CLN3-240ENST00000631023 B2MP61769 119 aa15.24■□□□□ 0.03
CLN3-240ENST00000631023 SLC39A9Q9NUM3 307 aa15.24■□□□□ 0.03
CLN3-240ENST00000631023 HSPB11Q9Y547 144 aa15.24■□□□□ 0.03
CLN3-240ENST00000631023 SOCS3O14543 225 aa15.24■□□□□ 0.03
CLN3-240ENST00000631023 SPRY2O43597 315 aa15.24■□□□□ 0.03
CLN3-240ENST00000631023 LYL1P12980 280 aa15.24■□□□□ 0.03
CLN3-240ENST00000631023 FGL1Q08830 312 aa15.24■□□□□ 0.03
CLN3-240ENST00000631023 DEFB135Q30KP9 77 aa15.24■□□□□ 0.03
CLN3-240ENST00000631023 ZNF709Q8N972 641 aa15.24■□□□□ 0.03
CLN3-240ENST00000631023 TMEM37Q8WXS4 190 aa15.24■□□□□ 0.03
CLN3-240ENST00000631023 NPCDR1Q9BY65 106 aa15.24■□□□□ 0.03
CLN3-240ENST00000631023 PXMP4Q9Y6I8 212 aa15.24■□□□□ 0.03
CLN3-240ENST00000631023 MORN3Q6PF18 240 aaPredicted RBP15.23■□□□□ 0.03
CLN3-240ENST00000631023 TRPT1Q86TN4 253 aaKnown RBP15.23■□□□□ 0.03
CLN3-240ENST00000631023 GIPP09681 153 aaPredicted RBP15.22■□□□□ 0.03
CLN3-240ENST00000631023 SPP1P10451 314 aa15.22■□□□□ 0.03
CLN3-240ENST00000631023 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa15.22■□□□□ 0.03
CLN3-240ENST00000631023 RNF183Q96D59 192 aa15.22■□□□□ 0.03
CLN3-240ENST00000631023 ATP5SQ99766 215 aa15.22■□□□□ 0.03
CLN3-240ENST00000631023 KCNIP2Q9NS61 270 aa15.22■□□□□ 0.03
CLN3-240ENST00000631023 CA1P00915 261 aaPredicted RBP15.21■□□□□ 0.03
CLN3-240ENST00000631023 BPIFA4PQ86YQ2 179 aa15.21■□□□□ 0.03
CLN3-240ENST00000631023 GATAD1Q8WUU5 269 aa15.21■□□□□ 0.03
CLN3-240ENST00000631023 WDR61Q9GZS3 305 aaKnown RBP15.21■□□□□ 0.03
CLN3-240ENST00000631023 RPRMQ9NS64 109 aa15.21■□□□□ 0.03
CLN3-240ENST00000631023 TMEM41BQ5BJD5 291 aa15.2■□□□□ 0.02
CLN3-240ENST00000631023 EDA2RQ9HAV5 297 aa15.2■□□□□ 0.02
CLN3-240ENST00000631023 A0A087X0K7 114 aa15.19■□□□□ 0.02
CLN3-240ENST00000631023 C17orf112F2Z3M2 114 aa15.19■□□□□ 0.02
CLN3-240ENST00000631023 IFNA5P01569 189 aa15.19■□□□□ 0.02
CLN3-240ENST00000631023 NUTF2P61970 127 aaKnown RBP15.19■□□□□ 0.02
CLN3-240ENST00000631023 SPATA31B1PQ5VZV4 182 aa15.19■□□□□ 0.02
CLN3-240ENST00000631023 FOXI2Q6ZQN5 318 aa15.19■□□□□ 0.02
CLN3-240ENST00000631023 SCGB1C1Q8TD33 95 aa15.19■□□□□ 0.02
CLN3-240ENST00000631023 H3BMM0 161 aa15.19■□□□□ 0.02
CLN3-240ENST00000631023 HLA-DRB4P13762 266 aa15.19■□□□□ 0.02
CLN3-240ENST00000631023 LRRC20Q8TCA0 184 aa15.19■□□□□ 0.02
CLN3-240ENST00000631023 C17orf77Q96MU5 243 aa15.19■□□□□ 0.02
CLN3-240ENST00000631023 SMIM3Q9BZL3 60 aa15.19■□□□□ 0.02
CLN3-240ENST00000631023 SAV1Q9H4B6 383 aaPredicted RBP15.19■□□□□ 0.02
CLN3-240ENST00000631023 HLA-DRB4X5D2U9 266 aa15.19■□□□□ 0.02
CLN3-240ENST00000631023 EBLN2Q6P2I7 272 aa15.18■□□□□ 0.02
CLN3-240ENST00000631023 MUC7Q8TAX7 377 aa15.17■□□□□ 0.02
CLN3-240ENST00000631023 C3orf84H3BNL1 204 aa15.16■□□□□ 0.02
CLN3-240ENST00000631023 MRPS12O15235 138 aaKnown RBP15.16■□□□□ 0.02
CLN3-240ENST00000631023 CXCL2P19875 107 aa15.16■□□□□ 0.02
CLN3-240ENST00000631023 LCN15Q6UWW0 184 aa15.16■□□□□ 0.02
CLN3-240ENST00000631023 MORN5Q5VZ52 161 aa15.15■□□□□ 0.02
CLN3-240ENST00000631023 C20orf173Q96LM9 149 aa15.15■□□□□ 0.02
CLN3-240ENST00000631023 RARRES2Q99969 163 aa15.15■□□□□ 0.02
CLN3-240ENST00000631023 C1QTNF4Q9BXJ3 329 aa15.15■□□□□ 0.02
CLN3-240ENST00000631023 PARD6GQ9BYG4 376 aaPredicted RBP15.15■□□□□ 0.02
CLN3-240ENST00000631023 GDF5OSQ5U4N7 250 aa15.15■□□□□ 0.02
CLN3-240ENST00000631023 INO80EQ8NBZ0 244 aaPredicted RBP15.15■□□□□ 0.02
CLN3-240ENST00000631023 OR2T35Q8NGX2 323 aa15.15■□□□□ 0.02
CLN3-240ENST00000631023 CLUHP3Q96NS8 147 aa15.15■□□□□ 0.02
CLN3-240ENST00000631023 AQP10Q96PS8 301 aa15.15■□□□□ 0.02
CLN3-240ENST00000631023 SLC50A1Q9BRV3 221 aa15.15■□□□□ 0.02
CLN3-240ENST00000631023 HRH4Q9H3N8 390 aa15.15■□□□□ 0.02
CLN3-240ENST00000631023 TRAV8-2A0A0B4J237 113 aa15.14■□□□□ 0.01
CLN3-240ENST00000631023 TRAV5A0A0B4J249 113 aa15.14■□□□□ 0.01
CLN3-240ENST00000631023 GIG44P09565 113 aaPredicted RBP15.14■□□□□ 0.01
CLN3-240ENST00000631023 DEFB1P60022 68 aa15.14■□□□□ 0.01
CLN3-240ENST00000631023 Q5BKY6 102 aa15.14■□□□□ 0.01
CLN3-240ENST00000631023 FAM78BQ5VT40 261 aa15.14■□□□□ 0.01
CLN3-240ENST00000631023 IGFL4Q6B9Z1 124 aa15.14■□□□□ 0.01
CLN3-240ENST00000631023 OR4B1Q8NGF8 309 aa15.14■□□□□ 0.01
CLN3-240ENST00000631023 OR11H2Q8NH07 326 aa15.14■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 76.2 ms