RNA–Protein interactions for RNA: ENST00000614932.1

VPS39-214, Transcript of VPS39, HOPS complex subunit, humanhuman

Gene VPS39, Length 2,835 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-214ENST00000614932 FAM169BQ8N8A8 192 aa8.25□□□□□ -1.09
VPS39-214ENST00000614932 C1orf162Q8NEQ5 155 aaPredicted RBP8.25□□□□□ -1.09
VPS39-214ENST00000614932 OR9G1Q8NH87 305 aa8.25□□□□□ -1.09
VPS39-214ENST00000614932 FGF23Q9GZV9 251 aaPredicted RBP8.25□□□□□ -1.09
VPS39-214ENST00000614932 ONECUT1Q9UBC0 465 aa8.25□□□□□ -1.09
VPS39-214ENST00000614932 SPRR3Q9UBC9 169 aa8.25□□□□□ -1.09
VPS39-214ENST00000614932 SIGLEC9Q9Y336 463 aa8.25□□□□□ -1.09
VPS39-214ENST00000614932 PTPRZ1P23471 2315 aaPredicted RBP8.25□□□□□ -1.09
VPS39-214ENST00000614932 FAM90A10PA6NDY2 464 aa8.25□□□□□ -1.09
VPS39-214ENST00000614932 FAM90A20PA6NIJ5 464 aa8.25□□□□□ -1.09
VPS39-214ENST00000614932 FAM90A7PA6NKC0 464 aa8.25□□□□□ -1.09
VPS39-214ENST00000614932 C15orf62A8K5M9 175 aa8.25□□□□□ -1.09
VPS39-214ENST00000614932 FAM90A22PA8MWA6 464 aa8.25□□□□□ -1.09
VPS39-214ENST00000614932 FAM90A12PA8MX19 464 aa8.25□□□□□ -1.09
VPS39-214ENST00000614932 FAM90A5PA8MXJ8 464 aa8.25□□□□□ -1.09
VPS39-214ENST00000614932 FAM90A23PA8MXZ1 464 aa8.25□□□□□ -1.09
VPS39-214ENST00000614932 IGLV2-14P01704 120 aa8.25□□□□□ -1.09
VPS39-214ENST00000614932 CSN3P07498 182 aa8.25□□□□□ -1.09
VPS39-214ENST00000614932 FAM90A15PP0C7V4 464 aa8.25□□□□□ -1.09
VPS39-214ENST00000614932 FAM90A13PP0C7W8 464 aa8.25□□□□□ -1.09
VPS39-214ENST00000614932 FAM90A14PP0C7W9 464 aa8.25□□□□□ -1.09
VPS39-214ENST00000614932 FAM90A24PP0C7X0 464 aa8.25□□□□□ -1.09
VPS39-214ENST00000614932 MYOD1P15172 320 aa8.25□□□□□ -1.09
VPS39-214ENST00000614932 TEN1Q86WV5 123 aa8.25□□□□□ -1.09
VPS39-214ENST00000614932 DLL3Q9NYJ7 618 aa8.25□□□□□ -1.09
VPS39-214ENST00000614932 ATMQ13315 3056 aa8.25□□□□□ -1.09
VPS39-214ENST00000614932 AKAP13Q12802 2813 aa8.24□□□□□ -1.09
VPS39-214ENST00000614932 CEP250Q9BV73 2442 aa8.24□□□□□ -1.09
VPS39-214ENST00000614932 RPL30P62888 115 aaKnown RBP8.24□□□□□ -1.09
VPS39-214ENST00000614932 HCFC1P51610 2035 aa8.24□□□□□ -1.09
VPS39-214ENST00000614932 LTAP01374 205 aa8.24□□□□□ -1.09
VPS39-214ENST00000614932 APOHP02749 345 aaPredicted RBP8.24□□□□□ -1.09
VPS39-214ENST00000614932 CACNG7P62955 275 aa8.24□□□□□ -1.09
VPS39-214ENST00000614932 FDCSPQ8NFU4 85 aa8.24□□□□□ -1.09
VPS39-214ENST00000614932 UBALD1Q8TB05 177 aa8.24□□□□□ -1.09
VPS39-214ENST00000614932 RASL10AQ92737 203 aa8.24□□□□□ -1.09
VPS39-214ENST00000614932 LINC00479Q96M42 142 aa8.24□□□□□ -1.09
VPS39-214ENST00000614932 MRPL32Q9BYC8 188 aaKnown RBP8.24□□□□□ -1.09
VPS39-214ENST00000614932 MDFICQ9P1T7 246 aa8.24□□□□□ -1.09
VPS39-214ENST00000614932 TRAV4A0A0B4J268 109 aa8.23□□□□□ -1.09
VPS39-214ENST00000614932 LYZL6O75951 148 aa8.23□□□□□ -1.09
VPS39-214ENST00000614932 PPP1R27Q86WC6 154 aa8.23□□□□□ -1.09
VPS39-214ENST00000614932 DLX4Q92988 240 aaPredicted RBP8.23□□□□□ -1.09
VPS39-214ENST00000614932 FBXL15Q9H469 300 aa8.23□□□□□ -1.09
VPS39-214ENST00000614932 SLC25A10Q9UBX3 287 aaPredicted RBP8.23□□□□□ -1.09
VPS39-214ENST00000614932 KLF13Q9Y2Y9 288 aaPredicted RBP8.23□□□□□ -1.09
VPS39-214ENST00000614932 TRGV5A0A0B4J1U4 118 aa8.23□□□□□ -1.09
VPS39-214ENST00000614932 K7EMI3 77 aa8.23□□□□□ -1.09
VPS39-214ENST00000614932 P0C879 139 aa8.23□□□□□ -1.09
VPS39-214ENST00000614932 LINC00694P0DN24 101 aa8.23□□□□□ -1.09
VPS39-214ENST00000614932 PSMG4Q5JS54 123 aa8.23□□□□□ -1.09
VPS39-214ENST00000614932 ABHD12Q8N2K0 398 aa8.23□□□□□ -1.09
VPS39-214ENST00000614932 MDS2Q8NDY4 140 aa8.23□□□□□ -1.09
VPS39-214ENST00000614932 PIFOQ8TCI5 191 aa8.23□□□□□ -1.09
VPS39-214ENST00000614932 SSMEM1Q8WWF3 244 aa8.23□□□□□ -1.09
VPS39-214ENST00000614932 TCF19Q9Y242 345 aa8.23□□□□□ -1.09
VPS39-214ENST00000614932 DMXL2Q8TDJ6 3036 aa8.23□□□□□ -1.09
VPS39-214ENST00000614932 GGTLC3B5MD39 225 aa8.22□□□□□ -1.09
VPS39-214ENST00000614932 RPL7P18124 248 aaKnown RBP8.22□□□□□ -1.09
VPS39-214ENST00000614932 CNEP1R1Q8N9A8 125 aa8.22□□□□□ -1.09
VPS39-214ENST00000614932 OR1L8Q8NGR8 309 aa8.22□□□□□ -1.09
VPS39-214ENST00000614932 RASL11BQ9BPW5 248 aa8.22□□□□□ -1.09
VPS39-214ENST00000614932 PLEKHA3Q9HB20 300 aa8.22□□□□□ -1.09
VPS39-214ENST00000614932 ENY2Q9NPA8 101 aa8.22□□□□□ -1.09
VPS39-214ENST00000614932 IGKV3D-15A0A087WSY6 115 aa8.22□□□□□ -1.09
VPS39-214ENST00000614932 CA6P23280 308 aa8.22□□□□□ -1.09
VPS39-214ENST00000614932 ASIPP42127 132 aa8.22□□□□□ -1.09
VPS39-214ENST00000614932 SPINK9Q5DT21 86 aa8.22□□□□□ -1.09
VPS39-214ENST00000614932 MDP1Q86V88 176 aa8.22□□□□□ -1.09
VPS39-214ENST00000614932 RPRMLQ8N4K4 120 aa8.22□□□□□ -1.09
VPS39-214ENST00000614932 TRBV25-1A0A075B6N4 114 aa8.21□□□□□ -1.09
VPS39-214ENST00000614932 FAM106CPP0CH98 169 aa8.21□□□□□ -1.09
VPS39-214ENST00000614932 COL8A1P27658 744 aa8.21□□□□□ -1.09
VPS39-214ENST00000614932 TAL2Q16559 108 aa8.21□□□□□ -1.09
VPS39-214ENST00000614932 KRTAP27-1Q3LI81 207 aa8.21□□□□□ -1.09
VPS39-214ENST00000614932 FAM106AQ4KMX7 169 aa8.21□□□□□ -1.09
VPS39-214ENST00000614932 LINC01587Q99440 93 aa8.21□□□□□ -1.09
VPS39-214ENST00000614932 KLF12Q9Y4X4 402 aa8.21□□□□□ -1.09
VPS39-214ENST00000614932 LOC107984640A0A0U1RRK4 108 aa8.21□□□□□ -1.1
VPS39-214ENST00000614932 ZNF137PP52743 207 aa8.21□□□□□ -1.1
VPS39-214ENST00000614932 MIR17HGQ75NE6 70 aa8.21□□□□□ -1.1
VPS39-214ENST00000614932 FAM19A5Q7Z5A7 132 aaPredicted RBP8.21□□□□□ -1.1
VPS39-214ENST00000614932 LRRC75A-AS1Q8N1F1 130 aa8.21□□□□□ -1.1
VPS39-214ENST00000614932 OR10J6PQ8NGY7 276 aa8.21□□□□□ -1.1
VPS39-214ENST00000614932 PLPPR2Q96GM1 343 aa8.21□□□□□ -1.1
VPS39-214ENST00000614932 ZNF414Q96IQ9 312 aa8.21□□□□□ -1.1
VPS39-214ENST00000614932 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP8.21□□□□□ -1.1
VPS39-214ENST00000614932 COL8A2P25067 703 aa8.21□□□□□ -1.1
VPS39-214ENST00000614932 LY6DQ14210 128 aa8.21□□□□□ -1.1
VPS39-214ENST00000614932 DEFB109BQ30KR1 87 aa8.21□□□□□ -1.1
VPS39-214ENST00000614932 MBNL2Q5VZF2 373 aaKnown RBP8.21□□□□□ -1.1
VPS39-214ENST00000614932 Q6P435 159 aa8.21□□□□□ -1.1
VPS39-214ENST00000614932 PRSS3P2Q8NHM4 247 aa8.21□□□□□ -1.1
VPS39-214ENST00000614932 PRDM14Q9GZV8 571 aa8.21□□□□□ -1.1
VPS39-214ENST00000614932 FZR1Q9UM11 496 aa8.21□□□□□ -1.1
VPS39-214ENST00000614932 LSM4Q9Y4Z0 139 aaKnown RBP8.21□□□□□ -1.1
VPS39-214ENST00000614932 ESPL1Q14674 2120 aa8.2□□□□□ -1.1
VPS39-214ENST00000614932 CXorf67Q86X51 503 aaPredicted RBP8.2□□□□□ -1.1
VPS39-214ENST00000614932 A0A1W2PPI3 338 aa8.2□□□□□ -1.1
VPS39-214ENST00000614932 CRLF1O75462 422 aa8.2□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 45.6 ms