RNA–Protein interactions for RNA: ENST00000600840.1

TRIM28-214, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 338 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-214ENST00000600840 SFTA3P0C7M3 94 aa6.59□□□□□ -1.35
TRIM28-214ENST00000600840 RBMY1DP0C7P1 496 aaKnown RBP6.59□□□□□ -1.35
TRIM28-214ENST00000600840 ATF4P18848 351 aaPredicted RBP6.59□□□□□ -1.35
TRIM28-214ENST00000600840 GATA2P23769 480 aaPredicted RBP6.59□□□□□ -1.35
TRIM28-214ENST00000600840 ELLP55199 621 aaPredicted RBP6.59□□□□□ -1.35
TRIM28-214ENST00000600840 SYNJ2BPP57105 145 aa6.59□□□□□ -1.35
TRIM28-214ENST00000600840 PMS2P11Q13670 270 aa6.59□□□□□ -1.35
TRIM28-214ENST00000600840 RHEBQ15382 184 aa6.59□□□□□ -1.35
TRIM28-214ENST00000600840 USF2Q15853 346 aaPredicted RBP6.59□□□□□ -1.35
TRIM28-214ENST00000600840 GUCA2BQ16661 112 aa6.59□□□□□ -1.35
TRIM28-214ENST00000600840 GUK1Q16774 197 aa6.59□□□□□ -1.35
TRIM28-214ENST00000600840 RPEL1Q2QD12 228 aa6.59□□□□□ -1.35
TRIM28-214ENST00000600840 TEPPQ6URK8 271 aa6.59□□□□□ -1.35
TRIM28-214ENST00000600840 PATE2Q6UY27 113 aa6.59□□□□□ -1.35
TRIM28-214ENST00000600840 CYP2G1PQ6ZSU1 146 aa6.59□□□□□ -1.35
TRIM28-214ENST00000600840 LILRB2Q8N423 598 aa6.59□□□□□ -1.35
TRIM28-214ENST00000600840 OR10G4Q8NGN3 311 aa6.59□□□□□ -1.35
TRIM28-214ENST00000600840 OR2G3Q8NGZ4 309 aa6.59□□□□□ -1.35
TRIM28-214ENST00000600840 SLC35B3Q9H1N7 401 aa6.59□□□□□ -1.35
TRIM28-214ENST00000600840 SMCO4Q9NRQ5 59 aa6.59□□□□□ -1.35
TRIM28-214ENST00000600840 SIGLEC8Q9NYZ4 499 aa6.59□□□□□ -1.35
TRIM28-214ENST00000600840 MRPL27Q9P0M9 148 aaKnown RBP6.59□□□□□ -1.35
TRIM28-214ENST00000600840 PUS1Q9Y606 427 aaKnown RBP eCLIP6.59□□□□□ -1.35
TRIM28-214ENST00000600840 RFNGQ9Y644 331 aa6.59□□□□□ -1.35
TRIM28-214ENST00000600840 C2orf70A6NJV1 201 aa6.58□□□□□ -1.36
TRIM28-214ENST00000600840 ZFP92A6NM28 416 aa6.58□□□□□ -1.36
TRIM28-214ENST00000600840 AGPAT2O15120 278 aa6.58□□□□□ -1.36
TRIM28-214ENST00000600840 IFNA1P01562 189 aa6.58□□□□□ -1.36
TRIM28-214ENST00000600840 RD3LP0DJH9 198 aa6.58□□□□□ -1.36
TRIM28-214ENST00000600840 ATP6V0CP27449 155 aa6.58□□□□□ -1.36
TRIM28-214ENST00000600840 RPL29P47914 159 aaKnown RBP6.58□□□□□ -1.36
TRIM28-214ENST00000600840 RELQ04864 619 aaPredicted RBP6.58□□□□□ -1.36
TRIM28-214ENST00000600840 CLINT1Q14677 625 aa6.58□□□□□ -1.36
TRIM28-214ENST00000600840 FAM106AQ4KMX7 169 aa6.58□□□□□ -1.36
TRIM28-214ENST00000600840 TM4SF20Q53R12 229 aa6.58□□□□□ -1.36
TRIM28-214ENST00000600840 C15orf54Q8N8G6 183 aa6.58□□□□□ -1.36
TRIM28-214ENST00000600840 SREK1IP1Q8N9Q2 155 aaPredicted RBP6.58□□□□□ -1.36
TRIM28-214ENST00000600840 HSD17B11Q8NBQ5 300 aa6.58□□□□□ -1.36
TRIM28-214ENST00000600840 OR9G4Q8NGQ1 327 aa6.58□□□□□ -1.36
TRIM28-214ENST00000600840 Q8WTZ3 238 aa6.58□□□□□ -1.36
TRIM28-214ENST00000600840 LYSTQ99698 3801 aa6.58□□□□□ -1.36
TRIM28-214ENST00000600840 GGTLC1Q9BX51 225 aa6.58□□□□□ -1.36
TRIM28-214ENST00000600840 EIF5A2Q9GZV4 153 aaKnown RBP6.58□□□□□ -1.36
TRIM28-214ENST00000600840 PRELID1Q9Y255 219 aa6.58□□□□□ -1.36
TRIM28-214ENST00000600840 IGHV3OR16-8A0A075B7F1 116 aa6.57□□□□□ -1.36
TRIM28-214ENST00000600840 IZUMO1RA6ND01 250 aa6.57□□□□□ -1.36
TRIM28-214ENST00000600840 YIF1AO95070 293 aa6.57□□□□□ -1.36
TRIM28-214ENST00000600840 IGLV1-51P01701 117 aa6.57□□□□□ -1.36
TRIM28-214ENST00000600840 APOHP02749 345 aaPredicted RBP6.57□□□□□ -1.36
TRIM28-214ENST00000600840 IGHV4-30-4P0DP06 118 aa6.57□□□□□ -1.36
TRIM28-214ENST00000600840 FOLR2P14207 255 aa6.57□□□□□ -1.36
TRIM28-214ENST00000600840 ADCYAP1P18509 176 aa6.57□□□□□ -1.36
TRIM28-214ENST00000600840 CBLN1P23435 193 aa6.57□□□□□ -1.36
TRIM28-214ENST00000600840 CRYBB3P26998 211 aa6.57□□□□□ -1.36
TRIM28-214ENST00000600840 SELENOTP62341 195 aa6.57□□□□□ -1.36
TRIM28-214ENST00000600840 RNF212Q495C1 297 aa6.57□□□□□ -1.36
TRIM28-214ENST00000600840 KHDC3LQ587J8 217 aa6.57□□□□□ -1.36
TRIM28-214ENST00000600840 MIC13Q5XKP0 118 aa6.57□□□□□ -1.36
TRIM28-214ENST00000600840 OR51G1Q8NGK1 321 aa6.57□□□□□ -1.36
TRIM28-214ENST00000600840 FAM213BQ8TBF2 198 aa6.57□□□□□ -1.36
TRIM28-214ENST00000600840 TMEM37Q8WXS4 190 aa6.57□□□□□ -1.36
TRIM28-214ENST00000600840 C17orf77Q96MU5 243 aa6.57□□□□□ -1.36
TRIM28-214ENST00000600840 NPCDR1Q9BY65 106 aa6.57□□□□□ -1.36
TRIM28-214ENST00000600840 VSIRQ9H7M9 311 aa6.57□□□□□ -1.36
TRIM28-214ENST00000600840 KCNIP2Q9NS61 270 aa6.57□□□□□ -1.36
TRIM28-214ENST00000600840 C19orf73Q9NVV2 129 aa6.57□□□□□ -1.36
TRIM28-214ENST00000600840 PLA2G2EQ9NZK7 142 aa6.57□□□□□ -1.36
TRIM28-214ENST00000600840 SMPXQ9UHP9 88 aa6.57□□□□□ -1.36
TRIM28-214ENST00000600840 PCLOQ9Y6V0 5065 aa6.56□□□□□ -1.36
TRIM28-214ENST00000600840 IGHV7-4-1A0A0J9YVY3 117 aa6.56□□□□□ -1.36
TRIM28-214ENST00000600840 UBE2L5PA0A1B0GUS4 154 aa6.56□□□□□ -1.36
TRIM28-214ENST00000600840 SMCO3A2RU48 225 aa6.56□□□□□ -1.36
TRIM28-214ENST00000600840 RBFOX3A6NFN3 312 aa6.56□□□□□ -1.36
TRIM28-214ENST00000600840 B4DEV8 164 aa6.56□□□□□ -1.36
TRIM28-214ENST00000600840 C17orf112F2Z3M2 114 aa6.56□□□□□ -1.36
TRIM28-214ENST00000600840 MPDU1O75352 247 aa6.56□□□□□ -1.36
TRIM28-214ENST00000600840 IL4P05112 153 aa6.56□□□□□ -1.36
TRIM28-214ENST00000600840 FGF7P21781 194 aa6.56□□□□□ -1.36
TRIM28-214ENST00000600840 PPT1P50897 306 aa6.56□□□□□ -1.36
TRIM28-214ENST00000600840 AKR1C1Q04828 323 aa6.56□□□□□ -1.36
TRIM28-214ENST00000600840 PNRC1Q12796 327 aaPredicted RBP6.56□□□□□ -1.36
TRIM28-214ENST00000600840 ZNF506Q5JVG8 444 aa6.56□□□□□ -1.36
TRIM28-214ENST00000600840 FAM90A2PQ658T7 463 aa6.56□□□□□ -1.36
TRIM28-214ENST00000600840 MBD3L1Q8WWY6 194 aa6.56□□□□□ -1.36
TRIM28-214ENST00000600840 RNF125Q96EQ8 232 aa6.56□□□□□ -1.36
TRIM28-214ENST00000600840 DAZ1Q9NQZ3 744 aaKnown RBP6.56□□□□□ -1.36
TRIM28-214ENST00000600840 UFC1Q9Y3C8 167 aa6.56□□□□□ -1.36
TRIM28-214ENST00000600840 STARD9Q9P2P6 4700 aa6.55□□□□□ -1.36
TRIM28-214ENST00000600840 A0A087WWC5 75 aa6.55□□□□□ -1.36
TRIM28-214ENST00000600840 ZNF320A2RRD8 509 aa6.55□□□□□ -1.36
TRIM28-214ENST00000600840 CHEK1O14757 476 aa6.55□□□□□ -1.36
TRIM28-214ENST00000600840 ZNF207O43670 478 aaKnown RBP6.55□□□□□ -1.36
TRIM28-214ENST00000600840 BUB3O43684 328 aa6.55□□□□□ -1.36
TRIM28-214ENST00000600840 DEFB114Q30KQ6 69 aa6.55□□□□□ -1.36
TRIM28-214ENST00000600840 TMEM41BQ5BJD5 291 aa6.55□□□□□ -1.36
TRIM28-214ENST00000600840 SOHLH1Q5JUK2 328 aa6.55□□□□□ -1.36
TRIM28-214ENST00000600840 ATRAIDQ6UW56 229 aa6.55□□□□□ -1.36
TRIM28-214ENST00000600840 TM2D3Q9BRN9 247 aa6.55□□□□□ -1.36
TRIM28-214ENST00000600840 RSG1Q9BU20 258 aa6.55□□□□□ -1.36
TRIM28-214ENST00000600840 MLXQ9UH92 298 aa6.55□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 59.1 ms