RNA–Protein interactions for RNA: ENST00000586058.1

LIG3-206, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 581 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-206ENST00000586058 HIST1H1EP10412 219 aaKnown RBP4.8□□□□□ -1.64
LIG3-206ENST00000586058 AKR1C3P42330 323 aa4.8□□□□□ -1.64
LIG3-206ENST00000586058 CTAG1AP78358 180 aa4.8□□□□□ -1.64
LIG3-206ENST00000586058 CCL20P78556 96 aa4.8□□□□□ -1.64
LIG3-206ENST00000586058 PDE6HQ13956 83 aa4.8□□□□□ -1.64
LIG3-206ENST00000586058 KIAA0141Q14154 515 aaPredicted RBP4.8□□□□□ -1.64
LIG3-206ENST00000586058 USF2Q15853 346 aaPredicted RBP4.8□□□□□ -1.64
LIG3-206ENST00000586058 C1orf194Q5T5A4 169 aa4.8□□□□□ -1.64
LIG3-206ENST00000586058 SAMD13Q5VXD3 122 aa4.8□□□□□ -1.64
LIG3-206ENST00000586058 Q6ZSV7 163 aa4.8□□□□□ -1.64
LIG3-206ENST00000586058 LYPD1Q8N2G4 141 aa4.8□□□□□ -1.64
LIG3-206ENST00000586058 CYB561D1Q8N8Q1 229 aa4.8□□□□□ -1.64
LIG3-206ENST00000586058 KLHL30-AS1Q8NEE0 82 aa4.8□□□□□ -1.64
LIG3-206ENST00000586058 TVP23CQ96ET8 276 aa4.8□□□□□ -1.64
LIG3-206ENST00000586058 SMR3AQ99954 134 aa4.8□□□□□ -1.64
LIG3-206ENST00000586058 RARRES2Q99969 163 aa4.8□□□□□ -1.64
LIG3-206ENST00000586058 SLC50A1Q9BRV3 221 aa4.8□□□□□ -1.64
LIG3-206ENST00000586058 CHRDL1Q9BU40 450 aa4.8□□□□□ -1.64
LIG3-206ENST00000586058 DAZ1Q9NQZ3 744 aaKnown RBP4.8□□□□□ -1.64
LIG3-206ENST00000586058 MRPL27Q9P0M9 148 aaKnown RBP4.8□□□□□ -1.64
LIG3-206ENST00000586058 PEMTQ9UBM1 199 aa4.8□□□□□ -1.64
LIG3-206ENST00000586058 NAT8Q9UHE5 227 aa4.8□□□□□ -1.64
LIG3-206ENST00000586058 RPH3ALQ9UNE2 315 aa4.8□□□□□ -1.64
LIG3-206ENST00000586058 CARHSP1Q9Y2V2 147 aaKnown RBP4.8□□□□□ -1.64
LIG3-206ENST00000586058 ITPR3Q14573 2671 aa4.8□□□□□ -1.64
LIG3-206ENST00000586058 CELSR2Q9HCU4 2923 aa4.8□□□□□ -1.64
LIG3-206ENST00000586058 HELZ2Q9BYK8 2649 aaKnown RBP4.8□□□□□ -1.64
LIG3-206ENST00000586058 ABCA12Q86UK0 2595 aa4.8□□□□□ -1.64
LIG3-206ENST00000586058 TRAV5A0A0B4J249 113 aa4.79□□□□□ -1.64
LIG3-206ENST00000586058 SERTM2A0A1B0GWG4 89 aa4.79□□□□□ -1.64
LIG3-206ENST00000586058 ZNF785A8K8V0 405 aa4.79□□□□□ -1.64
LIG3-206ENST00000586058 B4DEV8 164 aa4.79□□□□□ -1.64
LIG3-206ENST00000586058 F8W735 103 aaPredicted RBP4.79□□□□□ -1.64
LIG3-206ENST00000586058 FAM229AH3BQW9 127 aa4.79□□□□□ -1.64
LIG3-206ENST00000586058 EIF3GO75821 320 aaKnown RBP eCLIP4.79□□□□□ -1.64
LIG3-206ENST00000586058 NDUFA7O95182 113 aa4.79□□□□□ -1.64
LIG3-206ENST00000586058 RPLP1P05386 114 aaKnown RBP4.79□□□□□ -1.64
LIG3-206ENST00000586058 S100A9P06702 114 aaKnown RBP4.79□□□□□ -1.64
LIG3-206ENST00000586058 NBEAP1P0C6P0 100 aa4.79□□□□□ -1.64
LIG3-206ENST00000586058 GP9P14770 177 aa4.79□□□□□ -1.64
LIG3-206ENST00000586058 ADMP35318 185 aa4.79□□□□□ -1.64
LIG3-206ENST00000586058 ATP5G3P48201 142 aa4.79□□□□□ -1.64
LIG3-206ENST00000586058 RHEBQ15382 184 aa4.79□□□□□ -1.64
LIG3-206ENST00000586058 LEMD1Q68G75 181 aa4.79□□□□□ -1.64
LIG3-206ENST00000586058 TOMM20LQ6UXN7 152 aa4.79□□□□□ -1.64
LIG3-206ENST00000586058 PATE2Q6UY27 113 aa4.79□□□□□ -1.64
LIG3-206ENST00000586058 SIGLEC15Q6ZMC9 328 aa4.79□□□□□ -1.64
LIG3-206ENST00000586058 Q6ZS46 218 aa4.79□□□□□ -1.64
LIG3-206ENST00000586058 Q71RC1 249 aaPredicted RBP4.79□□□□□ -1.64
LIG3-206ENST00000586058 C1QL4Q86Z23 238 aa4.79□□□□□ -1.64
LIG3-206ENST00000586058 C5orf17Q8NAS9 161 aa4.79□□□□□ -1.64
LIG3-206ENST00000586058 C4orf3Q8WVX3 66 aa4.79□□□□□ -1.64
LIG3-206ENST00000586058 WFDC12Q8WWY7 111 aa4.79□□□□□ -1.64
LIG3-206ENST00000586058 HIST1H2BAQ96A08 127 aa4.79□□□□□ -1.64
LIG3-206ENST00000586058 OR5B12Q96R08 314 aa4.79□□□□□ -1.64
LIG3-206ENST00000586058 PARLQ9H300 379 aa4.79□□□□□ -1.64
LIG3-206ENST00000586058 C16orf95Q9H693 158 aa4.79□□□□□ -1.64
LIG3-206ENST00000586058 BIN3Q9NQY0 253 aa4.79□□□□□ -1.64
LIG3-206ENST00000586058 CLEC5AQ9NY25 188 aa4.79□□□□□ -1.64
LIG3-206ENST00000586058 POLQO75417 2590 aa4.78□□□□□ -1.64
LIG3-206ENST00000586058 SCO2A0A1W2PP80 73 aa4.78□□□□□ -1.64
LIG3-206ENST00000586058 FBLL1A6NHQ2 334 aaKnown RBP4.78□□□□□ -1.64
LIG3-206ENST00000586058 LINC01619G3V211 115 aa4.78□□□□□ -1.64
LIG3-206ENST00000586058 ZNF253O75346 499 aa4.78□□□□□ -1.64
LIG3-206ENST00000586058 CRLF1O75462 422 aa4.78□□□□□ -1.64
LIG3-206ENST00000586058 CDX1P47902 265 aaPredicted RBP4.78□□□□□ -1.64
LIG3-206ENST00000586058 GNG4P50150 75 aa4.78□□□□□ -1.64
LIG3-206ENST00000586058 CD81P60033 236 aa4.78□□□□□ -1.64
LIG3-206ENST00000586058 RANP62826 216 aaKnown RBP4.78□□□□□ -1.64
LIG3-206ENST00000586058 RPL11P62913 178 aaKnown RBP4.78□□□□□ -1.64
LIG3-206ENST00000586058 SUMO1P63165 101 aaKnown RBP4.78□□□□□ -1.64
LIG3-206ENST00000586058 SRSF3P84103 164 aaKnown RBP4.78□□□□□ -1.64
LIG3-206ENST00000586058 ADIRFQ15847 76 aa4.78□□□□□ -1.64
LIG3-206ENST00000586058 TMEM241Q24JQ0 296 aa4.78□□□□□ -1.64
LIG3-206ENST00000586058 LCNL1Q6ZST4 164 aa4.78□□□□□ -1.64
LIG3-206ENST00000586058 C8orf86Q6ZUL3 223 aa4.78□□□□□ -1.64
LIG3-206ENST00000586058 RNF152Q8N8N0 203 aa4.78□□□□□ -1.64
LIG3-206ENST00000586058 FXYD5Q96DB9 178 aa4.78□□□□□ -1.64
LIG3-206ENST00000586058 FMC1Q96HJ9 113 aa4.78□□□□□ -1.64
LIG3-206ENST00000586058 FAM167A-AS1Q96KT0 104 aa4.78□□□□□ -1.64
LIG3-206ENST00000586058 ATG101Q9BSB4 218 aa4.78□□□□□ -1.64
LIG3-206ENST00000586058 NDFIP1Q9BT67 221 aa4.78□□□□□ -1.64
LIG3-206ENST00000586058 KLK15Q9H2R5 256 aa4.78□□□□□ -1.64
LIG3-206ENST00000586058 Q9H3A6 140 aa4.78□□□□□ -1.64
LIG3-206ENST00000586058 ESM1Q9NQ30 184 aa4.78□□□□□ -1.64
LIG3-206ENST00000586058 OTORQ9NRC9 128 aa4.78□□□□□ -1.64
LIG3-206ENST00000586058 SERTAD4Q9NUC0 356 aa4.78□□□□□ -1.64
LIG3-206ENST00000586058 RNF114Q9Y508 228 aa4.78□□□□□ -1.64
LIG3-206ENST00000586058 YTHDF2Q9Y5A9 579 aaKnown RBP4.78□□□□□ -1.64
LIG3-206ENST00000586058 TSSC4Q9Y5U2 329 aaPredicted RBP4.78□□□□□ -1.64
LIG3-206ENST00000586058 PDZD2O15018 2839 aa4.78□□□□□ -1.65
LIG3-206ENST00000586058 FLNAP21333 2647 aaKnown RBP4.77□□□□□ -1.65
LIG3-206ENST00000586058 CSPG4Q6UVK1 2322 aa4.77□□□□□ -1.65
LIG3-206ENST00000586058 TRBV19A0A075B6N1 114 aa4.77□□□□□ -1.65
LIG3-206ENST00000586058 IGHV3OR16-8A0A075B7F1 116 aa4.77□□□□□ -1.65
LIG3-206ENST00000586058 A0A087X0K7 114 aa4.77□□□□□ -1.65
LIG3-206ENST00000586058 IGHV7-4-1A0A0J9YVY3 117 aa4.77□□□□□ -1.65
LIG3-206ENST00000586058 CLPSL1A2RUU4 121 aa4.77□□□□□ -1.65
LIG3-206ENST00000586058 PGPA6NDG6 321 aa4.77□□□□□ -1.65
LIG3-206ENST00000586058 H3BQ15 152 aa4.77□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 118.6 ms