RNA–Protein interactions for RNA: ENST00000560467.1

LDLR-212, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 928 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-212ENST00000560467 SEC14L6B5MCN3 397 aa9.01□□□□□ -0.97
LDLR-212ENST00000560467 F8W735 103 aaPredicted RBP9.01□□□□□ -0.97
LDLR-212ENST00000560467 LINC01619G3V211 115 aa9.01□□□□□ -0.97
LDLR-212ENST00000560467 ADMP35318 185 aa9.01□□□□□ -0.97
LDLR-212ENST00000560467 KIAA0141Q14154 515 aaPredicted RBP9.01□□□□□ -0.97
LDLR-212ENST00000560467 LCN15Q6UWW0 184 aa9.01□□□□□ -0.97
LDLR-212ENST00000560467 PQLC2Q6ZP29 291 aa9.01□□□□□ -0.97
LDLR-212ENST00000560467 RPP25LQ8N5L8 163 aaKnown RBP9.01□□□□□ -0.97
LDLR-212ENST00000560467 MBD3L1Q8WWY6 194 aa9.01□□□□□ -0.97
LDLR-212ENST00000560467 RAX2Q96IS3 184 aa9.01□□□□□ -0.97
LDLR-212ENST00000560467 SLC25A22Q9H936 323 aa9.01□□□□□ -0.97
LDLR-212ENST00000560467 PEMTQ9UBM1 199 aa9.01□□□□□ -0.97
LDLR-212ENST00000560467 SACSQ9NZJ4 4579 aa9.01□□□□□ -0.97
LDLR-212ENST00000560467 HUWE1Q7Z6Z7 4374 aaKnown RBP9□□□□□ -0.97
LDLR-212ENST00000560467 BIRC6Q9NR09 4857 aa9□□□□□ -0.97
LDLR-212ENST00000560467 TRAV1-1A0A0B4J248 108 aa9□□□□□ -0.97
LDLR-212ENST00000560467 C3orf84H3BNL1 204 aa9□□□□□ -0.97
LDLR-212ENST00000560467 OR7C2O60412 319 aa9□□□□□ -0.97
LDLR-212ENST00000560467 TAGLN2P37802 199 aaKnown RBP9□□□□□ -0.97
LDLR-212ENST00000560467 FHITP49789 147 aa9□□□□□ -0.97
LDLR-212ENST00000560467 DEFB136Q30KP8 78 aa9□□□□□ -0.97
LDLR-212ENST00000560467 GCSAMLQ5JQS6 135 aa9□□□□□ -0.97
LDLR-212ENST00000560467 BPIFA4PQ86YQ2 179 aa9□□□□□ -0.97
LDLR-212ENST00000560467 OR8I2Q8N0Y5 310 aa9□□□□□ -0.97
LDLR-212ENST00000560467 OR11H1Q8NG94 326 aa9□□□□□ -0.97
LDLR-212ENST00000560467 GPR82Q96P67 336 aa9□□□□□ -0.97
LDLR-212ENST00000560467 VSIRQ9H7M9 311 aa9□□□□□ -0.97
LDLR-212ENST00000560467 TMEM167BQ9NRX6 74 aa9□□□□□ -0.97
LDLR-212ENST00000560467 MRPL27Q9P0M9 148 aaKnown RBP9□□□□□ -0.97
LDLR-212ENST00000560467 RFNGQ9Y644 331 aa9□□□□□ -0.97
LDLR-212ENST00000560467 K7EMT4 169 aa8.99□□□□□ -0.97
LDLR-212ENST00000560467 CCL24O00175 119 aa8.99□□□□□ -0.97
LDLR-212ENST00000560467 NMBP08949 121 aa8.99□□□□□ -0.97
LDLR-212ENST00000560467 RPL7P18124 248 aaKnown RBP8.99□□□□□ -0.97
LDLR-212ENST00000560467 PSMB3P49720 205 aa8.99□□□□□ -0.97
LDLR-212ENST00000560467 C1orf194Q5T5A4 169 aa8.99□□□□□ -0.97
LDLR-212ENST00000560467 IL34Q6ZMJ4 242 aa8.99□□□□□ -0.97
LDLR-212ENST00000560467 TMEM37Q8WXS4 190 aa8.99□□□□□ -0.97
LDLR-212ENST00000560467 SHANK2-AS3Q9BTD1 123 aa8.99□□□□□ -0.97
LDLR-212ENST00000560467 ELOVL1Q9BW60 279 aa8.99□□□□□ -0.97
LDLR-212ENST00000560467 SLC25A39Q9BZJ4 359 aaPredicted RBP8.99□□□□□ -0.97
LDLR-212ENST00000560467 SEPSECSQ9HD40 501 aaKnown RBP8.99□□□□□ -0.97
LDLR-212ENST00000560467 DAZ1Q9NQZ3 744 aaKnown RBP8.99□□□□□ -0.97
LDLR-212ENST00000560467 ZMAT5Q9UDW3 170 aaKnown RBP8.99□□□□□ -0.97
LDLR-212ENST00000560467 EPPK1P58107 5090 aaKnown RBP8.98□□□□□ -0.97
LDLR-212ENST00000560467 DNAH7Q8WXX0 4024 aa8.98□□□□□ -0.97
LDLR-212ENST00000560467 A0A1B0GV50 99 aa8.98□□□□□ -0.97
LDLR-212ENST00000560467 I3L521 148 aa8.98□□□□□ -0.97
LDLR-212ENST00000560467 LGALS9O00182 355 aa8.98□□□□□ -0.97
LDLR-212ENST00000560467 HMGB3O15347 200 aaKnown RBP8.98□□□□□ -0.97
LDLR-212ENST00000560467 CD5P06127 495 aa8.98□□□□□ -0.97
LDLR-212ENST00000560467 STAG3L2P0CL84 134 aa8.98□□□□□ -0.97
LDLR-212ENST00000560467 STAG3L3P0CL85 134 aa8.98□□□□□ -0.97
LDLR-212ENST00000560467 GALR1P47211 349 aa8.98□□□□□ -0.97
LDLR-212ENST00000560467 MEOX2P50222 304 aa8.98□□□□□ -0.97
LDLR-212ENST00000560467 PEA15Q15121 130 aa8.98□□□□□ -0.97
LDLR-212ENST00000560467 MIR17HGQ75NE6 70 aa8.98□□□□□ -0.97
LDLR-212ENST00000560467 TMEM190Q8WZ59 177 aa8.98□□□□□ -0.97
LDLR-212ENST00000560467 MARC2Q969Z3 335 aa8.98□□□□□ -0.97
LDLR-212ENST00000560467 UHRF2Q96PU4 802 aa8.98□□□□□ -0.97
LDLR-212ENST00000560467 PAXXQ9BUH6 204 aa8.98□□□□□ -0.97
LDLR-212ENST00000560467 OR51M1Q9H341 326 aa8.98□□□□□ -0.97
LDLR-212ENST00000560467 IGHV4OR15-8A0A075B7B6 117 aa8.97□□□□□ -0.97
LDLR-212ENST00000560467 A0A087WW49 117 aa8.97□□□□□ -0.97
LDLR-212ENST00000560467 HELTA6NFD8 242 aa8.97□□□□□ -0.97
LDLR-212ENST00000560467 ZNF98A6NK75 572 aa8.97□□□□□ -0.97
LDLR-212ENST00000560467 TRBV12-3P01733 135 aa8.97□□□□□ -0.97
LDLR-212ENST00000560467 ATF4P18848 351 aaPredicted RBP8.97□□□□□ -0.97
LDLR-212ENST00000560467 FGF8P55075 233 aaPredicted RBP8.97□□□□□ -0.97
LDLR-212ENST00000560467 SYNJ2BPP57105 145 aa8.97□□□□□ -0.97
LDLR-212ENST00000560467 UBE2L3P68036 154 aaKnown RBP8.97□□□□□ -0.97
LDLR-212ENST00000560467 USF2Q15853 346 aaPredicted RBP8.97□□□□□ -0.97
LDLR-212ENST00000560467 GUK1Q16774 197 aa8.97□□□□□ -0.97
LDLR-212ENST00000560467 PATE2Q6UY27 113 aa8.97□□□□□ -0.97
LDLR-212ENST00000560467 PCNPQ8WW12 178 aaKnown RBP8.97□□□□□ -0.97
LDLR-212ENST00000560467 EIF5A2Q9GZV4 153 aaKnown RBP8.97□□□□□ -0.97
LDLR-212ENST00000560467 MANBALQ9NQG1 85 aa8.97□□□□□ -0.97
LDLR-212ENST00000560467 GNG13Q9P2W3 67 aa8.97□□□□□ -0.97
LDLR-212ENST00000560467 IGHV3OR16-8A0A075B7F1 116 aa8.96□□□□□ -0.98
LDLR-212ENST00000560467 ZNF785A8K8V0 405 aa8.96□□□□□ -0.98
LDLR-212ENST00000560467 ARL14EPLP0DKL9 152 aa8.96□□□□□ -0.98
LDLR-212ENST00000560467 CRYBB3P26998 211 aa8.96□□□□□ -0.98
LDLR-212ENST00000560467 GCHFRP30047 84 aa8.96□□□□□ -0.98
LDLR-212ENST00000560467 RPL11P62913 178 aaKnown RBP8.96□□□□□ -0.98
LDLR-212ENST00000560467 CASC10Q5T4H9 136 aa8.96□□□□□ -0.98
LDLR-212ENST00000560467 C9orf66Q5T8R8 295 aa8.96□□□□□ -0.98
LDLR-212ENST00000560467 MUC7Q8TAX7 377 aa8.96□□□□□ -0.98
LDLR-212ENST00000560467 SUN5Q8TC36 379 aa8.96□□□□□ -0.98
LDLR-212ENST00000560467 NKX6-2Q9C056 277 aaPredicted RBP8.96□□□□□ -0.98
LDLR-212ENST00000560467 ZFAND3Q9H8U3 227 aa8.96□□□□□ -0.98
LDLR-212ENST00000560467 PLA2G2EQ9NZK7 142 aa8.96□□□□□ -0.98
LDLR-212ENST00000560467 TMEM14CQ9P0S9 112 aa8.96□□□□□ -0.98
LDLR-212ENST00000560467 IGHV7-4-1A0A0J9YVY3 117 aa8.95□□□□□ -0.98
LDLR-212ENST00000560467 H3BRN7 92 aa8.95□□□□□ -0.98
LDLR-212ENST00000560467 ZNF207O43670 478 aaKnown RBP8.95□□□□□ -0.98
LDLR-212ENST00000560467 KLF5Q13887 457 aaPredicted RBP8.95□□□□□ -0.98
LDLR-212ENST00000560467 ZNF726P1Q15940 193 aa8.95□□□□□ -0.98
LDLR-212ENST00000560467 SAMD13Q5VXD3 122 aa8.95□□□□□ -0.98
LDLR-212ENST00000560467 LYPD6BQ8NI32 183 aa8.95□□□□□ -0.98
LDLR-212ENST00000560467 TXNDC17Q9BRA2 123 aa8.95□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 111.5 ms