RNA–Protein interactions for RNA: ENST00000558528.1

LDLR-209, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 456 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-209ENST00000558528 DYNAPQ8N1N2 210 aa3.99□□□□□ -1.77
LDLR-209ENST00000558528 CIARTQ8N365 385 aaPredicted RBP3.99□□□□□ -1.77
LDLR-209ENST00000558528 OR1L4Q8NGR5 311 aa3.99□□□□□ -1.77
LDLR-209ENST00000558528 OR2G3Q8NGZ4 309 aa3.99□□□□□ -1.77
LDLR-209ENST00000558528 SGMS2Q8NHU3 365 aa3.99□□□□□ -1.77
LDLR-209ENST00000558528 TAF15Q92804 592 aaKnown RBP eCLIP3.99□□□□□ -1.77
LDLR-209ENST00000558528 OR4C12Q96R67 309 aa3.99□□□□□ -1.77
LDLR-209ENST00000558528 RNF2Q99496 336 aa3.99□□□□□ -1.77
LDLR-209ENST00000558528 ZNF747Q9BV97 191 aa3.99□□□□□ -1.77
LDLR-209ENST00000558528 WDR61Q9GZS3 305 aaKnown RBP3.99□□□□□ -1.77
LDLR-209ENST00000558528 MED9Q9NWA0 146 aa3.99□□□□□ -1.77
LDLR-209ENST00000558528 F11RQ9Y624 299 aaKnown RBP3.99□□□□□ -1.77
LDLR-209ENST00000558528 IGHV4OR15-8A0A075B7B6 117 aa3.98□□□□□ -1.77
LDLR-209ENST00000558528 IGHV3OR16-10A0A075B7F0 116 aa3.98□□□□□ -1.77
LDLR-209ENST00000558528 IGHV7-81A0A0B4J1V7 117 aa3.98□□□□□ -1.77
LDLR-209ENST00000558528 TRAV25A0A0B4J276 109 aa3.98□□□□□ -1.77
LDLR-209ENST00000558528 A0A0G2JLM5 398 aa3.98□□□□□ -1.77
LDLR-209ENST00000558528 FCN1O00602 326 aa3.98□□□□□ -1.77
LDLR-209ENST00000558528 HMGB3O15347 200 aaKnown RBP3.98□□□□□ -1.77
LDLR-209ENST00000558528 IGHG2P01859 326 aa3.98□□□□□ -1.77
LDLR-209ENST00000558528 IGF1P05019 195 aa3.98□□□□□ -1.77
LDLR-209ENST00000558528 FGF7P21781 194 aa3.98□□□□□ -1.77
LDLR-209ENST00000558528 CNTFRP26992 372 aa3.98□□□□□ -1.77
LDLR-209ENST00000558528 ATP6V0CP27449 155 aa3.98□□□□□ -1.77
LDLR-209ENST00000558528 RPL13AP40429 203 aaKnown RBP3.98□□□□□ -1.77
LDLR-209ENST00000558528 OPRK1P41145 380 aa3.98□□□□□ -1.77
LDLR-209ENST00000558528 RPL29P47914 159 aaKnown RBP3.98□□□□□ -1.77
LDLR-209ENST00000558528 CRIP2P52943 208 aaPredicted RBP3.98□□□□□ -1.77
LDLR-209ENST00000558528 SLC35B1P78383 322 aa3.98□□□□□ -1.77
LDLR-209ENST00000558528 AKR1C1Q04828 323 aa3.98□□□□□ -1.77
LDLR-209ENST00000558528 KLK9Q2XQG4 91 aa3.98□□□□□ -1.77
LDLR-209ENST00000558528 DEFB112Q30KQ8 113 aa3.98□□□□□ -1.77
LDLR-209ENST00000558528 SPINK9Q5DT21 86 aa3.98□□□□□ -1.77
LDLR-209ENST00000558528 FAM120AOSQ5T036 256 aa3.98□□□□□ -1.77
LDLR-209ENST00000558528 UNQ5815/PRO19632Q6UWF5 114 aa3.98□□□□□ -1.77
LDLR-209ENST00000558528 ALKAL2Q6UX46 152 aa3.98□□□□□ -1.77
LDLR-209ENST00000558528 SLC35E3Q7Z769 313 aa3.98□□□□□ -1.77
LDLR-209ENST00000558528 C5orf56Q8N8D9 126 aa3.98□□□□□ -1.77
LDLR-209ENST00000558528 HSD17B11Q8NBQ5 300 aa3.98□□□□□ -1.77
LDLR-209ENST00000558528 MAPK1IP1LQ8NDC0 245 aa3.98□□□□□ -1.77
LDLR-209ENST00000558528 LFNGQ8NES3 379 aa3.98□□□□□ -1.77
LDLR-209ENST00000558528 PIFOQ8TCI5 191 aa3.98□□□□□ -1.77
LDLR-209ENST00000558528 VN1R17PQ8TDU5 208 aa3.98□□□□□ -1.77
LDLR-209ENST00000558528 ZNF418Q8TF45 676 aaPredicted RBP3.98□□□□□ -1.77
LDLR-209ENST00000558528 USMG5Q96IX5 58 aa3.98□□□□□ -1.77
LDLR-209ENST00000558528 P2RX4Q99571 388 aa3.98□□□□□ -1.77
LDLR-209ENST00000558528 PARP11Q9NR21 331 aa3.98□□□□□ -1.77
LDLR-209ENST00000558528 VPREB3Q9UKI3 123 aa3.98□□□□□ -1.77
LDLR-209ENST00000558528 KLK9Q9UKQ9 250 aa3.98□□□□□ -1.77
LDLR-209ENST00000558528 DSCAMO60469 2012 aa3.98□□□□□ -1.77
LDLR-209ENST00000558528 PLCE1Q9P212 2302 aa3.98□□□□□ -1.77
LDLR-209ENST00000558528 TRBV7-1A0A0A6YYK4 115 aa3.97□□□□□ -1.77
LDLR-209ENST00000558528 UBE2L5PA0A1B0GUS4 154 aa3.97□□□□□ -1.77
LDLR-209ENST00000558528 A0A1W2PPV4 95 aa3.97□□□□□ -1.77
LDLR-209ENST00000558528 IGLC7A0M8Q6 106 aa3.97□□□□□ -1.77
LDLR-209ENST00000558528 LINC00862A6NCI5 91 aa3.97□□□□□ -1.77
LDLR-209ENST00000558528 FAM223BA6NKX1 122 aa3.97□□□□□ -1.77
LDLR-209ENST00000558528 ZFP92A6NM28 416 aa3.97□□□□□ -1.77
LDLR-209ENST00000558528 ZNF705EA8MWA4 302 aaPredicted RBP3.97□□□□□ -1.77
LDLR-209ENST00000558528 CRYBA1P05813 215 aa3.97□□□□□ -1.77
LDLR-209ENST00000558528 M6PRP20645 277 aa3.97□□□□□ -1.77
LDLR-209ENST00000558528 MDKP21741 143 aaPredicted RBP3.97□□□□□ -1.77
LDLR-209ENST00000558528 CD24P25063 80 aa3.97□□□□□ -1.77
LDLR-209ENST00000558528 GPR183P32249 361 aa3.97□□□□□ -1.77
LDLR-209ENST00000558528 TAS2R45P59539 299 aa3.97□□□□□ -1.77
LDLR-209ENST00000558528 WT1-ASQ06250 92 aa3.97□□□□□ -1.77
LDLR-209ENST00000558528 ARL16Q0P5N6 197 aa3.97□□□□□ -1.77
LDLR-209ENST00000558528 MRGPRG-AS1Q2M3A8 158 aa3.97□□□□□ -1.77
LDLR-209ENST00000558528 IL34Q6ZMJ4 242 aa3.97□□□□□ -1.77
LDLR-209ENST00000558528 SLC16A13Q7RTY0 426 aa3.97□□□□□ -1.77
LDLR-209ENST00000558528 FAM223AQ8IWN6 122 aa3.97□□□□□ -1.77
LDLR-209ENST00000558528 OR10W1Q8NGF6 305 aa3.97□□□□□ -1.77
LDLR-209ENST00000558528 OR4X1Q8NH49 305 aa3.97□□□□□ -1.77
LDLR-209ENST00000558528 SUN5Q8TC36 379 aa3.97□□□□□ -1.77
LDLR-209ENST00000558528 C17orf50Q8WW18 174 aa3.97□□□□□ -1.77
LDLR-209ENST00000558528 TMED6Q8WW62 240 aa3.97□□□□□ -1.77
LDLR-209ENST00000558528 TMEM190Q8WZ59 177 aa3.97□□□□□ -1.77
LDLR-209ENST00000558528 RBMXL1Q96E39 390 aaKnown RBP3.97□□□□□ -1.77
LDLR-209ENST00000558528 PFDN5Q99471 154 aa3.97□□□□□ -1.77
LDLR-209ENST00000558528 TRGV9Q99603 122 aa3.97□□□□□ -1.77
LDLR-209ENST00000558528 PBDC1Q9BVG4 233 aa3.97□□□□□ -1.77
LDLR-209ENST00000558528 NPCDR1Q9BY65 106 aa3.97□□□□□ -1.77
LDLR-209ENST00000558528 ACTR3CQ9C0K3 210 aaPredicted RBP3.97□□□□□ -1.77
LDLR-209ENST00000558528 SMDT1Q9H4I9 107 aa3.97□□□□□ -1.77
LDLR-209ENST00000558528 WFDC1Q9HC57 220 aa3.97□□□□□ -1.77
LDLR-209ENST00000558528 SLC39A9Q9NUM3 307 aa3.97□□□□□ -1.77
LDLR-209ENST00000558528 MALRD1Q5VYJ5 2156 aa3.97□□□□□ -1.77
LDLR-209ENST00000558528 VWFP04275 2813 aa3.97□□□□□ -1.77
LDLR-209ENST00000558528 TRAV41A0A0B4J266 112 aa3.96□□□□□ -1.78
LDLR-209ENST00000558528 TCRBV4S1A1TA0A5B7 111 aa3.96□□□□□ -1.78
LDLR-209ENST00000558528 RAB19A4D1S5 217 aa3.96□□□□□ -1.78
LDLR-209ENST00000558528 HSBP1L1C9JCN9 74 aa3.96□□□□□ -1.78
LDLR-209ENST00000558528 E7EUB6 86 aa3.96□□□□□ -1.78
LDLR-209ENST00000558528 CLDN34H7C241 214 aa3.96□□□□□ -1.78
LDLR-209ENST00000558528 AGPAT2O15120 278 aa3.96□□□□□ -1.78
LDLR-209ENST00000558528 NUPL2O15504 423 aaKnown RBP3.96□□□□□ -1.78
LDLR-209ENST00000558528 GNG7O60262 68 aa3.96□□□□□ -1.78
LDLR-209ENST00000558528 NDUFS6O75380 124 aaKnown RBP3.96□□□□□ -1.78
LDLR-209ENST00000558528 IFNA1P01562 189 aa3.96□□□□□ -1.78
LDLR-209ENST00000558528 S100A1P23297 94 aa3.96□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 412.4 ms