RNA–Protein interactions for RNA: ENST00000558469.5

CUX1-216, Transcript of cut like homeobox 1, humanhuman

TSL 4

Gene CUX1, Length 588 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-216ENST00000558469 RPRMQ9NS64 109 aa7.28□□□□□ -1.24
CUX1-216ENST00000558469 MLXQ9UH92 298 aa7.28□□□□□ -1.24
CUX1-216ENST00000558469 FUT9Q9Y231 359 aa7.28□□□□□ -1.24
CUX1-216ENST00000558469 UMAD1C9J7I0 102 aa7.27□□□□□ -1.25
CUX1-216ENST00000558469 IGLL1P15814 213 aa7.27□□□□□ -1.25
CUX1-216ENST00000558469 BMI1P35226 326 aa7.27□□□□□ -1.25
CUX1-216ENST00000558469 CDC34P49427 236 aaPredicted RBP7.27□□□□□ -1.25
CUX1-216ENST00000558469 FAM74A1Q5RGS3 127 aa7.27□□□□□ -1.25
CUX1-216ENST00000558469 PRR31Q5SQ13 230 aa7.27□□□□□ -1.25
CUX1-216ENST00000558469 C1orf194Q5T5A4 169 aa7.27□□□□□ -1.25
CUX1-216ENST00000558469 C9orf66Q5T8R8 295 aa7.27□□□□□ -1.25
CUX1-216ENST00000558469 C16orf54Q6UWD8 224 aa7.27□□□□□ -1.25
CUX1-216ENST00000558469 MIR17HGQ75NE6 70 aa7.27□□□□□ -1.25
CUX1-216ENST00000558469 OR8I2Q8N0Y5 310 aa7.27□□□□□ -1.25
CUX1-216ENST00000558469 DYNLRB2Q8TF09 96 aa7.27□□□□□ -1.25
CUX1-216ENST00000558469 PHYHIPLQ96FC7 376 aa7.27□□□□□ -1.25
CUX1-216ENST00000558469 MCRIP2Q9BUT9 160 aaKnown RBP7.27□□□□□ -1.25
CUX1-216ENST00000558469 MRPL32Q9BYC8 188 aaKnown RBP7.27□□□□□ -1.25
CUX1-216ENST00000558469 ACTR3CQ9C0K3 210 aaPredicted RBP7.27□□□□□ -1.25
CUX1-216ENST00000558469 SIGLEC8Q9NYZ4 499 aa7.27□□□□□ -1.25
CUX1-216ENST00000558469 IGKV3-7A0A075B6H7 116 aa7.26□□□□□ -1.25
CUX1-216ENST00000558469 HMGB3O15347 200 aaKnown RBP7.26□□□□□ -1.25
CUX1-216ENST00000558469 EIF3GO75821 320 aaKnown RBP eCLIP7.26□□□□□ -1.25
CUX1-216ENST00000558469 FHITP49789 147 aa7.26□□□□□ -1.25
CUX1-216ENST00000558469 SULT1A2P50226 295 aa7.26□□□□□ -1.25
CUX1-216ENST00000558469 RPL11P62913 178 aaKnown RBP7.26□□□□□ -1.25
CUX1-216ENST00000558469 DEFB114Q30KQ6 69 aa7.26□□□□□ -1.25
CUX1-216ENST00000558469 TEX261Q6UWH6 196 aa7.26□□□□□ -1.25
CUX1-216ENST00000558469 SIGLEC15Q6ZMC9 328 aa7.26□□□□□ -1.25
CUX1-216ENST00000558469 SSX7Q7RTT5 188 aa7.26□□□□□ -1.25
CUX1-216ENST00000558469 TCF24Q7RTU0 167 aa7.26□□□□□ -1.25
CUX1-216ENST00000558469 FAM213BQ8TBF2 198 aa7.26□□□□□ -1.25
CUX1-216ENST00000558469 GLMPQ8WWB7 406 aa7.26□□□□□ -1.25
CUX1-216ENST00000558469 RAB24Q969Q5 203 aa7.26□□□□□ -1.25
CUX1-216ENST00000558469 SLC25A2Q9BXI2 301 aa7.26□□□□□ -1.25
CUX1-216ENST00000558469 TECRQ9NZ01 308 aaKnown RBP7.26□□□□□ -1.25
CUX1-216ENST00000558469 RNF24Q9Y225 148 aa7.26□□□□□ -1.25
CUX1-216ENST00000558469 CMYA5Q8N3K9 4069 aa7.26□□□□□ -1.25
CUX1-216ENST00000558469 CTXND1A0A1B0GTU2 59 aa7.25□□□□□ -1.25
CUX1-216ENST00000558469 IGLV1-51P01701 117 aa7.25□□□□□ -1.25
CUX1-216ENST00000558469 GALR1P47211 349 aa7.25□□□□□ -1.25
CUX1-216ENST00000558469 RAB5CP51148 216 aa7.25□□□□□ -1.25
CUX1-216ENST00000558469 INSL3P51460 131 aa7.25□□□□□ -1.25
CUX1-216ENST00000558469 TAS2R45P59539 299 aa7.25□□□□□ -1.25
CUX1-216ENST00000558469 ZNF726P1Q15940 193 aa7.25□□□□□ -1.25
CUX1-216ENST00000558469 CD300EQ496F6 205 aaPredicted RBP7.25□□□□□ -1.25
CUX1-216ENST00000558469 KHDC3LQ587J8 217 aa7.25□□□□□ -1.25
CUX1-216ENST00000558469 DPPA3Q6W0C5 159 aa7.25□□□□□ -1.25
CUX1-216ENST00000558469 RBPMS2Q6ZRY4 209 aaKnown RBP7.25□□□□□ -1.25
CUX1-216ENST00000558469 BPIFA4PQ86YQ2 179 aa7.25□□□□□ -1.25
CUX1-216ENST00000558469 FAM167A-AS1Q96KT0 104 aa7.25□□□□□ -1.25
CUX1-216ENST00000558469 GPR82Q96P67 336 aa7.25□□□□□ -1.25
CUX1-216ENST00000558469 SMAD5-AS1Q9Y6J3 95 aa7.25□□□□□ -1.25
CUX1-216ENST00000558469 IZUMO1RA6ND01 250 aa7.24□□□□□ -1.25
CUX1-216ENST00000558469 HELTA6NFD8 242 aa7.24□□□□□ -1.25
CUX1-216ENST00000558469 ZNF785A8K8V0 405 aa7.24□□□□□ -1.25
CUX1-216ENST00000558469 OR7C2O60412 319 aa7.24□□□□□ -1.25
CUX1-216ENST00000558469 IFNA7P01567 189 aa7.24□□□□□ -1.25
CUX1-216ENST00000558469 CD5P06127 495 aa7.24□□□□□ -1.25
CUX1-216ENST00000558469 SNRPCP09234 159 aaKnown RBP7.24□□□□□ -1.25
CUX1-216ENST00000558469 OR10J4P0C629 311 aa7.24□□□□□ -1.25
CUX1-216ENST00000558469 STAG3L2P0CL84 134 aa7.24□□□□□ -1.25
CUX1-216ENST00000558469 STAG3L3P0CL85 134 aa7.24□□□□□ -1.25
CUX1-216ENST00000558469 PYYP10082 97 aa7.24□□□□□ -1.25
CUX1-216ENST00000558469 RPL7P18124 248 aaKnown RBP7.24□□□□□ -1.25
CUX1-216ENST00000558469 ATF4P18848 351 aaPredicted RBP7.24□□□□□ -1.25
CUX1-216ENST00000558469 FAM90A2PQ658T7 463 aa7.24□□□□□ -1.25
CUX1-216ENST00000558469 LCN15Q6UWW0 184 aa7.24□□□□□ -1.25
CUX1-216ENST00000558469 TMEM61Q8N0U2 210 aa7.24□□□□□ -1.25
CUX1-216ENST00000558469 GBGT1Q8N5D6 347 aa7.24□□□□□ -1.25
CUX1-216ENST00000558469 ZNF680Q8NEM1 530 aa7.24□□□□□ -1.25
CUX1-216ENST00000558469 STXBP6Q8NFX7 210 aa7.24□□□□□ -1.25
CUX1-216ENST00000558469 RNF141Q8WVD5 230 aa7.24□□□□□ -1.25
CUX1-216ENST00000558469 PAXXQ9BUH6 204 aa7.24□□□□□ -1.25
CUX1-216ENST00000558469 OR51M1Q9H341 326 aa7.24□□□□□ -1.25
CUX1-216ENST00000558469 SORL1Q92673 2214 aa7.23□□□□□ -1.25
CUX1-216ENST00000558469 MAP1LC3B2A6NCE7 125 aa7.23□□□□□ -1.25
CUX1-216ENST00000558469 ZNF705EA8MWA4 302 aaPredicted RBP7.23□□□□□ -1.25
CUX1-216ENST00000558469 H3BTX0 84 aa7.23□□□□□ -1.25
CUX1-216ENST00000558469 DNASE2O00115 360 aaPredicted RBP7.23□□□□□ -1.25
CUX1-216ENST00000558469 MRPS12O15235 138 aaKnown RBP7.23□□□□□ -1.25
CUX1-216ENST00000558469 CXorf1O96002 111 aa7.23□□□□□ -1.25
CUX1-216ENST00000558469 H2AFB1P0C5Y9 115 aa7.23□□□□□ -1.25
CUX1-216ENST00000558469 ARL14EPLP0DKL9 152 aa7.23□□□□□ -1.25
CUX1-216ENST00000558469 GP9P14770 177 aa7.23□□□□□ -1.25
CUX1-216ENST00000558469 TFPI2P48307 235 aa7.23□□□□□ -1.25
CUX1-216ENST00000558469 FGF8P55075 233 aaPredicted RBP7.23□□□□□ -1.25
CUX1-216ENST00000558469 PAFAH1B2P68402 229 aa7.23□□□□□ -1.25
CUX1-216ENST00000558469 GUCA2BQ16661 112 aa7.23□□□□□ -1.25
CUX1-216ENST00000558469 LCN12Q6JVE5 192 aa7.23□□□□□ -1.25
CUX1-216ENST00000558469 PQLC2Q6ZP29 291 aa7.23□□□□□ -1.25
CUX1-216ENST00000558469 WFDC3Q8IUB2 231 aa7.23□□□□□ -1.25
CUX1-216ENST00000558469 IQCF2Q8IXL9 164 aa7.23□□□□□ -1.25
CUX1-216ENST00000558469 OR2K2Q8NGT1 345 aa7.23□□□□□ -1.25
CUX1-216ENST00000558469 SFT2D1Q8WV19 159 aa7.23□□□□□ -1.25
CUX1-216ENST00000558469 ZNF503Q96F45 646 aa7.23□□□□□ -1.25
CUX1-216ENST00000558469 MAP1LC3BQ9GZQ8 125 aa7.23□□□□□ -1.25
CUX1-216ENST00000558469 MS4A6AQ9H2W1 248 aa7.23□□□□□ -1.25
CUX1-216ENST00000558469 TMEM14CQ9P0S9 112 aa7.23□□□□□ -1.25
CUX1-216ENST00000558469 UBQLN2Q9UHD9 624 aa7.23□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 65.4 ms