RNA–Protein interactions for RNA: ENST00000553128.5

VPS29-211, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 449 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-211ENST00000553128 ZNF182P17025 639 aaPredicted RBP8.75□□□□□ -1.01
VPS29-211ENST00000553128 RHOBP62745 196 aa8.75□□□□□ -1.01
VPS29-211ENST00000553128 HIST1H1AQ02539 215 aaPredicted RBP8.75□□□□□ -1.01
VPS29-211ENST00000553128 ZNF493Q6ZR52 646 aa8.75□□□□□ -1.01
VPS29-211ENST00000553128 FAM219AQ8IW50 185 aa8.75□□□□□ -1.01
VPS29-211ENST00000553128 SELENOHQ8IZQ5 122 aaKnown RBP8.75□□□□□ -1.01
VPS29-211ENST00000553128 GLYATL2Q8WU03 294 aa8.75□□□□□ -1.01
VPS29-211ENST00000553128 TMEM70Q9BUB7 260 aa8.75□□□□□ -1.01
VPS29-211ENST00000553128 TMEM222Q9H0R3 208 aa8.75□□□□□ -1.01
VPS29-211ENST00000553128 ANKRD65E5RJM6 399 aa8.74□□□□□ -1.01
VPS29-211ENST00000553128 FGL1Q08830 312 aa8.74□□□□□ -1.01
VPS29-211ENST00000553128 TMED4Q7Z7H5 227 aa8.74□□□□□ -1.01
VPS29-211ENST00000553128 ZNF738Q8NE65 137 aa8.74□□□□□ -1.01
VPS29-211ENST00000553128 OR4D10Q8NGI6 311 aa8.74□□□□□ -1.01
VPS29-211ENST00000553128 OR13C8Q8NGS7 320 aa8.74□□□□□ -1.01
VPS29-211ENST00000553128 PARD6GQ9BYG4 376 aaPredicted RBP8.74□□□□□ -1.01
VPS29-211ENST00000553128 CD3DP04234 171 aa8.73□□□□□ -1.01
VPS29-211ENST00000553128 RPS19P39019 145 aaKnown RBP8.73□□□□□ -1.01
VPS29-211ENST00000553128 IZUMO2Q6UXV1 221 aa8.73□□□□□ -1.01
VPS29-211ENST00000553128 TMEM182Q6ZP80 229 aaPredicted RBP8.73□□□□□ -1.01
VPS29-211ENST00000553128 Q6ZTI0 123 aa8.73□□□□□ -1.01
VPS29-211ENST00000553128 LGI3Q8N145 548 aa8.73□□□□□ -1.01
VPS29-211ENST00000553128 OR8A1Q8NGG7 326 aa8.73□□□□□ -1.01
VPS29-211ENST00000553128 MARCH1Q8TCQ1 289 aa8.73□□□□□ -1.01
VPS29-211ENST00000553128 RBPMSQ93062 196 aaKnown RBP8.73□□□□□ -1.01
VPS29-211ENST00000553128 U3KQ87 197 aa8.73□□□□□ -1.01
VPS29-211ENST00000553128 IGLV5-52A0A0A0MRZ9 124 aa8.72□□□□□ -1.01
VPS29-211ENST00000553128 ADAP1O75689 374 aa8.72□□□□□ -1.01
VPS29-211ENST00000553128 RLN2P04090 185 aa8.72□□□□□ -1.01
VPS29-211ENST00000553128 GATA2P23769 480 aaPredicted RBP8.72□□□□□ -1.01
VPS29-211ENST00000553128 TMEM268Q5VZI3 342 aa8.72□□□□□ -1.01
VPS29-211ENST00000553128 NFE4Q86UQ8 179 aa8.72□□□□□ -1.01
VPS29-211ENST00000553128 NOXA1Q86UR1 476 aa8.72□□□□□ -1.01
VPS29-211ENST00000553128 CCDC71LQ8N9Z2 235 aa8.72□□□□□ -1.01
VPS29-211ENST00000553128 IL22RA2Q969J5 263 aa8.72□□□□□ -1.01
VPS29-211ENST00000553128 SLC35E1Q96K37 410 aa8.72□□□□□ -1.01
VPS29-211ENST00000553128 TRGV9Q99603 122 aa8.72□□□□□ -1.01
VPS29-211ENST00000553128 RBKSQ9H477 322 aa8.72□□□□□ -1.01
VPS29-211ENST00000553128 PRR13Q9NZ81 148 aa8.72□□□□□ -1.01
VPS29-211ENST00000553128 TEX13DA0A0J9YY54 714 aaPredicted RBP8.71□□□□□ -1.02
VPS29-211ENST00000553128 H7BYZ3 331 aa8.71□□□□□ -1.02
VPS29-211ENST00000553128 TMEM127O75204 238 aa8.71□□□□□ -1.02
VPS29-211ENST00000553128 GPX4P36969 197 aaPredicted RBP8.71□□□□□ -1.02
VPS29-211ENST00000553128 CDKN1BP46527 198 aa8.71□□□□□ -1.02
VPS29-211ENST00000553128 RNASE10Q5GAN6 216 aaKnown RBP8.71□□□□□ -1.02
VPS29-211ENST00000553128 OR1B1Q8NGR6 318 aa8.71□□□□□ -1.02
VPS29-211ENST00000553128 ZFAND1Q8TCF1 268 aa8.71□□□□□ -1.02
VPS29-211ENST00000553128 DTD1Q8TEA8 209 aa8.71□□□□□ -1.02
VPS29-211ENST00000553128 DEFB104AQ8WTQ1 72 aa8.71□□□□□ -1.02
VPS29-211ENST00000553128 RTBDNQ9BSG5 229 aaPredicted RBP8.71□□□□□ -1.02
VPS29-211ENST00000553128 PPP1R14DQ9NXH3 145 aa8.71□□□□□ -1.02
VPS29-211ENST00000553128 GABARAPH6UMI1 98 aa8.7□□□□□ -1.02
VPS29-211ENST00000553128 GABARAPO95166 117 aa8.7□□□□□ -1.02
VPS29-211ENST00000553128 ORM2P19652 201 aa8.7□□□□□ -1.02
VPS29-211ENST00000553128 CXCL3P19876 107 aa8.7□□□□□ -1.02
VPS29-211ENST00000553128 SCGB2B2Q4G0G5 96 aa8.7□□□□□ -1.02
VPS29-211ENST00000553128 CROCCP3Q8IVE0 287 aa8.7□□□□□ -1.02
VPS29-211ENST00000553128 LINC00528Q8N1L1 170 aa8.7□□□□□ -1.02
VPS29-211ENST00000553128 THAP8Q8NA92 274 aa8.7□□□□□ -1.02
VPS29-211ENST00000553128 OR4D5Q8NGN0 318 aa8.7□□□□□ -1.02
VPS29-211ENST00000553128 TERB2Q8NHR7 220 aa8.7□□□□□ -1.02
VPS29-211ENST00000553128 NAA60Q9H7X0 242 aa8.7□□□□□ -1.02
VPS29-211ENST00000553128 COMMD3Q9UBI1 195 aa8.7□□□□□ -1.02
VPS29-211ENST00000553128 HSPB7Q9UBY9 170 aa8.7□□□□□ -1.02
VPS29-211ENST00000553128 LRCOL1A6NCL2 159 aa8.69□□□□□ -1.02
VPS29-211ENST00000553128 SNURFLB1AK76 121 aa8.69□□□□□ -1.02
VPS29-211ENST00000553128 B3GALNT1O75752 331 aa8.69□□□□□ -1.02
VPS29-211ENST00000553128 PLA2G1BP04054 148 aaKnown RBP8.69□□□□□ -1.02
VPS29-211ENST00000553128 FABP1P07148 127 aa8.69□□□□□ -1.02
VPS29-211ENST00000553128 SULT1A3P0DMM9 295 aa8.69□□□□□ -1.02
VPS29-211ENST00000553128 SULT1A4P0DMN0 295 aa8.69□□□□□ -1.02
VPS29-211ENST00000553128 LSM3P62310 102 aaKnown RBP8.69□□□□□ -1.02
VPS29-211ENST00000553128 GFI1BQ5VTD9 330 aa8.69□□□□□ -1.02
VPS29-211ENST00000553128 MSRB1Q9NZV6 116 aa8.69□□□□□ -1.02
VPS29-211ENST00000553128 LRP2P98164 4655 aa8.68□□□□□ -1.02
VPS29-211ENST00000553128 NEDD8Q15843 81 aa8.68□□□□□ -1.02
VPS29-211ENST00000553128 PSG3Q16557 428 aa8.68□□□□□ -1.02
VPS29-211ENST00000553128 FAAP20Q6NZ36 180 aa8.68□□□□□ -1.02
VPS29-211ENST00000553128 LYPD5Q6UWN5 251 aa8.68□□□□□ -1.02
VPS29-211ENST00000553128 CCDC28AQ8IWP9 274 aa8.68□□□□□ -1.02
VPS29-211ENST00000553128 OR52I2Q8NH67 350 aa8.68□□□□□ -1.02
VPS29-211ENST00000553128 SLC45A2Q9UMX9 530 aa8.68□□□□□ -1.02
VPS29-211ENST00000553128 TMEM56-RWDD3S4R434 201 aa8.68□□□□□ -1.02
VPS29-211ENST00000553128 SMIM31A0A1B0GVY4 71 aa8.67□□□□□ -1.02
VPS29-211ENST00000553128 NPIPB6E9PJ23 425 aa8.67□□□□□ -1.02
VPS29-211ENST00000553128 H3BRN7 92 aa8.67□□□□□ -1.02
VPS29-211ENST00000553128 J3KRW8 73 aa8.67□□□□□ -1.02
VPS29-211ENST00000553128 TNFAIP8O95379 198 aa8.67□□□□□ -1.02
VPS29-211ENST00000553128 APOA1P02647 267 aa8.67□□□□□ -1.02
VPS29-211ENST00000553128 KRTAP10-4P60372 401 aaPredicted RBP8.67□□□□□ -1.02
VPS29-211ENST00000553128 WFDC10BQ8IUB3 73 aa8.67□□□□□ -1.02
VPS29-211ENST00000553128 RPUSD4Q96CM3 377 aaKnown RBP8.67□□□□□ -1.02
VPS29-211ENST00000553128 GPR82Q96P67 336 aa8.67□□□□□ -1.02
VPS29-211ENST00000553128 LINC00467Q9BRT7 94 aa8.67□□□□□ -1.02
VPS29-211ENST00000553128 LY96Q9Y6Y9 160 aa8.67□□□□□ -1.02
VPS29-211ENST00000553128 TRGV2A0A075B6R0 118 aa8.66□□□□□ -1.02
VPS29-211ENST00000553128 CRYM-AS1A6NIL9 109 aa8.66□□□□□ -1.02
VPS29-211ENST00000553128 PRAC2D3DTV9 90 aa8.66□□□□□ -1.02
VPS29-211ENST00000553128 HPGDSO60760 199 aa8.66□□□□□ -1.02
VPS29-211ENST00000553128 DAZ2Q13117 558 aaKnown RBP8.66□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 63.1 ms