RNA–Protein interactions for RNA: ENST00000549341.1

DEPDC4-208, Transcript of DEP domain containing 4, humanhuman

TSL 1 (best)

Gene DEPDC4, Length 541 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4-208ENST00000549341 FBXL7Q9UJT9 491 aa5.51□□□□□ -1.53
DEPDC4-208ENST00000549341 FUT9Q9Y231 359 aa5.51□□□□□ -1.53
DEPDC4-208ENST00000549341 RFNGQ9Y644 331 aa5.51□□□□□ -1.53
DEPDC4-208ENST00000549341 ARL2-SNX15V9GYD0 113 aa5.51□□□□□ -1.53
DEPDC4-208ENST00000549341 TRBV7-1A0A0A6YYK4 115 aa5.5□□□□□ -1.53
DEPDC4-208ENST00000549341 A0A0G2JLM5 398 aa5.5□□□□□ -1.53
DEPDC4-208ENST00000549341 LOC102723971A0A1B0GUV8 181 aa5.5□□□□□ -1.53
DEPDC4-208ENST00000549341 F6UZH7 168 aa5.5□□□□□ -1.53
DEPDC4-208ENST00000549341 K7EIM0 57 aa5.5□□□□□ -1.53
DEPDC4-208ENST00000549341 PDE6DO43924 150 aa5.5□□□□□ -1.53
DEPDC4-208ENST00000549341 OR2J3O76001 311 aa5.5□□□□□ -1.53
DEPDC4-208ENST00000549341 YIF1AO95070 293 aa5.5□□□□□ -1.53
DEPDC4-208ENST00000549341 TOMM40O96008 361 aa5.5□□□□□ -1.53
DEPDC4-208ENST00000549341 IGHG2P01859 326 aa5.5□□□□□ -1.53
DEPDC4-208ENST00000549341 APOC3P02656 99 aa5.5□□□□□ -1.53
DEPDC4-208ENST00000549341 IGF1P05019 195 aa5.5□□□□□ -1.53
DEPDC4-208ENST00000549341 SFTA3P0C7M3 94 aa5.5□□□□□ -1.53
DEPDC4-208ENST00000549341 STAG3L2P0CL84 134 aa5.5□□□□□ -1.53
DEPDC4-208ENST00000549341 STAG3L3P0CL85 134 aa5.5□□□□□ -1.53
DEPDC4-208ENST00000549341 RD3LP0DJH9 198 aa5.5□□□□□ -1.53
DEPDC4-208ENST00000549341 FCGR2BP31994 310 aaPredicted RBP5.5□□□□□ -1.53
DEPDC4-208ENST00000549341 MFAP2P55001 183 aa5.5□□□□□ -1.53
DEPDC4-208ENST00000549341 FGF8P55075 233 aaPredicted RBP5.5□□□□□ -1.53
DEPDC4-208ENST00000549341 PLP1P60201 277 aa5.5□□□□□ -1.53
DEPDC4-208ENST00000549341 YPEL3P61236 119 aaPredicted RBP5.5□□□□□ -1.53
DEPDC4-208ENST00000549341 SLC35B1P78383 322 aa5.5□□□□□ -1.53
DEPDC4-208ENST00000549341 SSBP2P81877 361 aaPredicted RBP5.5□□□□□ -1.53
DEPDC4-208ENST00000549341 NDPQ00604 133 aa5.5□□□□□ -1.53
DEPDC4-208ENST00000549341 ATP5G2Q06055 141 aa5.5□□□□□ -1.53
DEPDC4-208ENST00000549341 ZNF726P1Q15940 193 aa5.5□□□□□ -1.53
DEPDC4-208ENST00000549341 FAM74A3Q4VXF1 159 aa5.5□□□□□ -1.53
DEPDC4-208ENST00000549341 OR51G1Q8NGK1 321 aa5.5□□□□□ -1.53
DEPDC4-208ENST00000549341 OR1B1Q8NGR6 318 aa5.5□□□□□ -1.53
DEPDC4-208ENST00000549341 PIFOQ8TCI5 191 aa5.5□□□□□ -1.53
DEPDC4-208ENST00000549341 RXFP4Q8TDU9 374 aa5.5□□□□□ -1.53
DEPDC4-208ENST00000549341 USMG5Q96IX5 58 aa5.5□□□□□ -1.53
DEPDC4-208ENST00000549341 LINC00052Q96N35 136 aa5.5□□□□□ -1.53
DEPDC4-208ENST00000549341 UHRF2Q96PU4 802 aa5.5□□□□□ -1.53
DEPDC4-208ENST00000549341 HSPB9Q9BQS6 159 aa5.5□□□□□ -1.53
DEPDC4-208ENST00000549341 GPR61Q9BZJ8 451 aa5.5□□□□□ -1.53
DEPDC4-208ENST00000549341 NKX6-2Q9C056 277 aaPredicted RBP5.5□□□□□ -1.53
DEPDC4-208ENST00000549341 TMEM231Q9H6L2 316 aa5.5□□□□□ -1.53
DEPDC4-208ENST00000549341 ZNF580Q9UK33 172 aa5.5□□□□□ -1.53
DEPDC4-208ENST00000549341 HIGD1AQ9Y241 93 aa5.5□□□□□ -1.53
DEPDC4-208ENST00000549341 IGKV1OR2-108A0A075B7D4 117 aa5.49□□□□□ -1.53
DEPDC4-208ENST00000549341 IGHV3-21A0A0B4J1V1 117 aa5.49□□□□□ -1.53
DEPDC4-208ENST00000549341 TMEM238LA0A1B0GVL6 79 aa5.49□□□□□ -1.53
DEPDC4-208ENST00000549341 TMEM250H0YL14 139 aa5.49□□□□□ -1.53
DEPDC4-208ENST00000549341 OR7C2O60412 319 aa5.49□□□□□ -1.53
DEPDC4-208ENST00000549341 BRI3O95415 125 aa5.49□□□□□ -1.53
DEPDC4-208ENST00000549341 IGHV3-48P01763 117 aa5.49□□□□□ -1.53
DEPDC4-208ENST00000549341 IGLC1P0CG04 106 aa5.49□□□□□ -1.53
DEPDC4-208ENST00000549341 EGR2P11161 476 aaPredicted RBP5.49□□□□□ -1.53
DEPDC4-208ENST00000549341 ORM2P19652 201 aa5.49□□□□□ -1.53
DEPDC4-208ENST00000549341 GCHFRP30047 84 aa5.49□□□□□ -1.53
DEPDC4-208ENST00000549341 RHOGP84095 191 aa5.49□□□□□ -1.53
DEPDC4-208ENST00000549341 MEF2BQ02080 365 aaPredicted RBP5.49□□□□□ -1.53
DEPDC4-208ENST00000549341 RELQ04864 619 aaPredicted RBP5.49□□□□□ -1.53
DEPDC4-208ENST00000549341 KLK9Q2XQG4 91 aa5.49□□□□□ -1.53
DEPDC4-208ENST00000549341 ASPHD1Q5U4P2 390 aa5.49□□□□□ -1.53
DEPDC4-208ENST00000549341 CST9LP1Q5W188 147 aa5.49□□□□□ -1.53
DEPDC4-208ENST00000549341 OR5AU1Q8NGC0 362 aa5.49□□□□□ -1.53
DEPDC4-208ENST00000549341 PRR25Q96S07 402 aa5.49□□□□□ -1.53
DEPDC4-208ENST00000549341 NIPSNAP3BQ9BS92 247 aa5.49□□□□□ -1.53
DEPDC4-208ENST00000549341 KLK9Q9UKQ9 250 aa5.49□□□□□ -1.53
DEPDC4-208ENST00000549341 PRELID1Q9Y255 219 aa5.49□□□□□ -1.53
DEPDC4-208ENST00000549341 CARHSP1Q9Y2V2 147 aaKnown RBP5.49□□□□□ -1.53
DEPDC4-208ENST00000549341 PLECQ15149 4684 aaKnown RBP5.48□□□□□ -1.53
DEPDC4-208ENST00000549341 IGKV1D-37A0A075B6S9 117 aa5.48□□□□□ -1.53
DEPDC4-208ENST00000549341 RBMY1BA6NDE4 496 aaKnown RBP5.48□□□□□ -1.53
DEPDC4-208ENST00000549341 RBMY1EA6NEQ0 496 aaKnown RBP5.48□□□□□ -1.53
DEPDC4-208ENST00000549341 BMPR1BO00238 502 aa5.48□□□□□ -1.53
DEPDC4-208ENST00000549341 HMGB3O15347 200 aaKnown RBP5.48□□□□□ -1.53
DEPDC4-208ENST00000549341 NDUFB8O95169 186 aa5.48□□□□□ -1.53
DEPDC4-208ENST00000549341 TRGV3P03979 118 aa5.48□□□□□ -1.53
DEPDC4-208ENST00000549341 SRP19P09132 144 aaKnown RBP5.48□□□□□ -1.53
DEPDC4-208ENST00000549341 RBMY1DP0C7P1 496 aaKnown RBP5.48□□□□□ -1.53
DEPDC4-208ENST00000549341 ARL14EPLP0DKL9 152 aa5.48□□□□□ -1.53
DEPDC4-208ENST00000549341 PSG1P11464 419 aa5.48□□□□□ -1.53
DEPDC4-208ENST00000549341 GATA2P23769 480 aaPredicted RBP5.48□□□□□ -1.53
DEPDC4-208ENST00000549341 RAB9AP51151 201 aa5.48□□□□□ -1.53
DEPDC4-208ENST00000549341 CEBPGP53567 150 aa5.48□□□□□ -1.53
DEPDC4-208ENST00000549341 LYZP61626 148 aa5.48□□□□□ -1.53
DEPDC4-208ENST00000549341 CCL20P78556 96 aa5.48□□□□□ -1.53
DEPDC4-208ENST00000549341 ZNF90Q03938 601 aa5.48□□□□□ -1.53
DEPDC4-208ENST00000549341 PNRC1Q12796 327 aaPredicted RBP5.48□□□□□ -1.53
DEPDC4-208ENST00000549341 ICAM4Q14773 271 aa5.48□□□□□ -1.53
DEPDC4-208ENST00000549341 C15orf32Q32M92 178 aa5.48□□□□□ -1.53
DEPDC4-208ENST00000549341 TIGITQ495A1 244 aa5.48□□□□□ -1.53
DEPDC4-208ENST00000549341 GCSAMLQ5JQS6 135 aa5.48□□□□□ -1.53
DEPDC4-208ENST00000549341 ZNF600Q6ZNG1 722 aa5.48□□□□□ -1.53
DEPDC4-208ENST00000549341 MIR17HGQ75NE6 70 aa5.48□□□□□ -1.53
DEPDC4-208ENST00000549341 LINC00305Q7Z4B0 112 aa5.48□□□□□ -1.53
DEPDC4-208ENST00000549341 LINC00482Q8N8I6 264 aa5.48□□□□□ -1.53
DEPDC4-208ENST00000549341 WIPF2Q8TF74 440 aaPredicted RBP5.48□□□□□ -1.53
DEPDC4-208ENST00000549341 RPUSD4Q96CM3 377 aaKnown RBP5.48□□□□□ -1.53
DEPDC4-208ENST00000549341 RCHY1Q96PM5 261 aa5.48□□□□□ -1.53
DEPDC4-208ENST00000549341 PAXXQ9BUH6 204 aa5.48□□□□□ -1.53
DEPDC4-208ENST00000549341 OR51M1Q9H341 326 aa5.48□□□□□ -1.53
DEPDC4-208ENST00000549341 DOK5Q9P104 306 aa5.48□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 62.2 ms