RNA–Protein interactions for RNA: ENST00000544967.5

USP28-213, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 3,498 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-213ENST00000544967 FAM208BQ5VWN6 2430 aa4.25□□□□□ -1.73
USP28-213ENST00000544967 A0A087X0K7 114 aa4.25□□□□□ -1.73
USP28-213ENST00000544967 H3BUT2 72 aa4.25□□□□□ -1.73
USP28-213ENST00000544967 SMIM13P0DJ93 91 aa4.25□□□□□ -1.73
USP28-213ENST00000544967 ZNF32P17041 273 aa4.25□□□□□ -1.73
USP28-213ENST00000544967 FAM159AQ6UWV7 190 aa4.25□□□□□ -1.73
USP28-213ENST00000544967 SMIM20Q8N5G0 67 aa4.25□□□□□ -1.73
USP28-213ENST00000544967 RNASE7Q9H1E1 156 aaKnown RBP4.25□□□□□ -1.73
USP28-213ENST00000544967 FNDC4Q9H6D8 234 aaPredicted RBP4.25□□□□□ -1.73
USP28-213ENST00000544967 GCM1Q9NP62 436 aa4.25□□□□□ -1.73
USP28-213ENST00000544967 TEX50A0A1B0GTY4 177 aa4.24□□□□□ -1.73
USP28-213ENST00000544967 TEX48A0A1B0GUV7 120 aa4.24□□□□□ -1.73
USP28-213ENST00000544967 SRRM4A7MD48 611 aaKnown RBP4.24□□□□□ -1.73
USP28-213ENST00000544967 A8MWL6 223 aa4.24□□□□□ -1.73
USP28-213ENST00000544967 NPIPB6E9PJ23 425 aa4.24□□□□□ -1.73
USP28-213ENST00000544967 PRRG2O14669 202 aa4.24□□□□□ -1.73
USP28-213ENST00000544967 IGHV3-7P01780 117 aa4.24□□□□□ -1.73
USP28-213ENST00000544967 NTF4P34130 210 aa4.24□□□□□ -1.73
USP28-213ENST00000544967 RPL24P83731 157 aaKnown RBP4.24□□□□□ -1.73
USP28-213ENST00000544967 KLRD1Q13241 179 aa4.24□□□□□ -1.73
USP28-213ENST00000544967 POU2AF1Q16633 256 aa4.24□□□□□ -1.73
USP28-213ENST00000544967 SAMD5Q5TGI4 173 aa4.24□□□□□ -1.73
USP28-213ENST00000544967 MIC13Q5XKP0 118 aa4.24□□□□□ -1.73
USP28-213ENST00000544967 ZNF714Q96N38 554 aa4.24□□□□□ -1.73
USP28-213ENST00000544967 ZNF747Q9BV97 191 aa4.24□□□□□ -1.73
USP28-213ENST00000544967 TM2D2Q9BX73 214 aa4.24□□□□□ -1.73
USP28-213ENST00000544967 FGF23Q9GZV9 251 aaPredicted RBP4.24□□□□□ -1.73
USP28-213ENST00000544967 TMEM133Q9H2Q1 129 aa4.24□□□□□ -1.73
USP28-213ENST00000544967 SS18L2Q9UHA2 77 aa4.24□□□□□ -1.73
USP28-213ENST00000544967 KCNS2Q9ULS6 477 aa4.24□□□□□ -1.73
USP28-213ENST00000544967 CYSLTR1Q9Y271 337 aa4.24□□□□□ -1.73
USP28-213ENST00000544967 POLDIP2Q9Y2S7 368 aa4.24□□□□□ -1.73
USP28-213ENST00000544967 CACNA1CQ13936 2221 aa4.24□□□□□ -1.73
USP28-213ENST00000544967 A0A1W2PNR3 127 aa4.24□□□□□ -1.73
USP28-213ENST00000544967 E9PLD3 99 aa4.24□□□□□ -1.73
USP28-213ENST00000544967 INS-IGF2F8WCM5 200 aa4.24□□□□□ -1.73
USP28-213ENST00000544967 C8orf88P0DMB2 117 aa4.24□□□□□ -1.73
USP28-213ENST00000544967 G6PCP35575 357 aa4.24□□□□□ -1.73
USP28-213ENST00000544967 RPL8P62917 257 aaKnown RBP4.24□□□□□ -1.73
USP28-213ENST00000544967 IL17RELQ6ZVW7 336 aa4.24□□□□□ -1.73
USP28-213ENST00000544967 RPRMLQ8N4K4 120 aa4.24□□□□□ -1.73
USP28-213ENST00000544967 KIR3DL3Q8N743 410 aa4.24□□□□□ -1.73
USP28-213ENST00000544967 GPHA2Q96T91 129 aa4.24□□□□□ -1.73
USP28-213ENST00000544967 FOXB1Q99853 325 aa4.24□□□□□ -1.73
USP28-213ENST00000544967 DEFB127Q9H1M4 99 aa4.24□□□□□ -1.73
USP28-213ENST00000544967 ERG28Q9UKR5 140 aa4.24□□□□□ -1.73
USP28-213ENST00000544967 TMEM30CPA0ZSE6 113 aa4.23□□□□□ -1.73
USP28-213ENST00000544967 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP4.23□□□□□ -1.73
USP28-213ENST00000544967 ADH4P08319 380 aa4.23□□□□□ -1.73
USP28-213ENST00000544967 BRWD1-AS2P59051 145 aa4.23□□□□□ -1.73
USP28-213ENST00000544967 LTC4SQ16873 150 aa4.23□□□□□ -1.73
USP28-213ENST00000544967 Q6AWC8 147 aa4.23□□□□□ -1.73
USP28-213ENST00000544967 AMMECR1Q9Y4X0 333 aaPredicted RBP4.23□□□□□ -1.73
USP28-213ENST00000544967 NBPF19A0A087WUL8 3843 aa4.23□□□□□ -1.73
USP28-213ENST00000544967 LINC01546A6NGU7 62 aa4.23□□□□□ -1.73
USP28-213ENST00000544967 VWC2LB2RUY7 222 aa4.23□□□□□ -1.73
USP28-213ENST00000544967 GGTLC3B5MD39 225 aa4.23□□□□□ -1.73
USP28-213ENST00000544967 FCN3O75636 299 aa4.23□□□□□ -1.73
USP28-213ENST00000544967 MYCNOSP40205 109 aa4.23□□□□□ -1.73
USP28-213ENST00000544967 MRAPQ8TCY5 172 aa4.23□□□□□ -1.73
USP28-213ENST00000544967 PHLDA1Q8WV24 401 aaPredicted RBP4.23□□□□□ -1.73
USP28-213ENST00000544967 RNASE6Q93091 150 aaKnown RBP4.23□□□□□ -1.73
USP28-213ENST00000544967 GALMQ96C23 342 aa4.23□□□□□ -1.73
USP28-213ENST00000544967 RITA1Q96K30 269 aa4.23□□□□□ -1.73
USP28-213ENST00000544967 MLST8Q9BVC4 326 aa4.23□□□□□ -1.73
USP28-213ENST00000544967 RPP21Q9H633 154 aaKnown RBP4.23□□□□□ -1.73
USP28-213ENST00000544967 VPREB3Q9UKI3 123 aa4.23□□□□□ -1.73
USP28-213ENST00000544967 A0A1W2PRD5 423 aa4.23□□□□□ -1.73
USP28-213ENST00000544967 A0A1W2PRF3 423 aa4.23□□□□□ -1.73
USP28-213ENST00000544967 A0A1W2PRM7 423 aa4.23□□□□□ -1.73
USP28-213ENST00000544967 C19orf71A6NCJ1 209 aa4.23□□□□□ -1.73
USP28-213ENST00000544967 APOA2P02652 100 aa4.23□□□□□ -1.73
USP28-213ENST00000544967 SMAGPQ0VAQ4 97 aa4.23□□□□□ -1.73
USP28-213ENST00000544967 PSG5Q15238 335 aa4.23□□□□□ -1.73
USP28-213ENST00000544967 CEACAM16Q2WEN9 425 aa4.23□□□□□ -1.73
USP28-213ENST00000544967 Q6ZT83 130 aa4.23□□□□□ -1.73
USP28-213ENST00000544967 ZNF436-AS1Q8NC38 126 aaPredicted RBP4.23□□□□□ -1.73
USP28-213ENST00000544967 NEU4Q8WWR8 484 aaPredicted RBP4.23□□□□□ -1.73
USP28-213ENST00000544967 ZNF503Q96F45 646 aa4.23□□□□□ -1.73
USP28-213ENST00000544967 GTSF1LQ9H1H1 148 aa4.23□□□□□ -1.73
USP28-213ENST00000544967 UFC1Q9Y3C8 167 aa4.23□□□□□ -1.73
USP28-213ENST00000544967 SPTBN2O15020 2390 aa4.23□□□□□ -1.73
USP28-213ENST00000544967 A0A1B0GWB2 263 aa4.22□□□□□ -1.73
USP28-213ENST00000544967 F5H768 121 aa4.22□□□□□ -1.73
USP28-213ENST00000544967 H3BMG7 143 aa4.22□□□□□ -1.73
USP28-213ENST00000544967 IGLV1-44P01699 117 aa4.22□□□□□ -1.73
USP28-213ENST00000544967 RPL30P62888 115 aaKnown RBP4.22□□□□□ -1.73
USP28-213ENST00000544967 CDSNQ15517 529 aa4.22□□□□□ -1.73
USP28-213ENST00000544967 RND1Q92730 232 aa4.22□□□□□ -1.73
USP28-213ENST00000544967 NABP2Q9BQ15 211 aa4.22□□□□□ -1.73
USP28-213ENST00000544967 PLEKHA3Q9HB20 300 aa4.22□□□□□ -1.73
USP28-213ENST00000544967 GTF3C1Q12789 2109 aa4.22□□□□□ -1.73
USP28-213ENST00000544967 GCN1Q92616 2671 aaKnown RBP4.22□□□□□ -1.73
USP28-213ENST00000544967 C17orf100A8MU93 164 aa4.22□□□□□ -1.73
USP28-213ENST00000544967 C17orf98A8MV24 154 aa4.22□□□□□ -1.73
USP28-213ENST00000544967 HIGD1CA8MV81 97 aa4.22□□□□□ -1.73
USP28-213ENST00000544967 PEX7O00628 323 aa4.22□□□□□ -1.73
USP28-213ENST00000544967 SYNGR1O43759 233 aa4.22□□□□□ -1.73
USP28-213ENST00000544967 AGFG2O95081 481 aa4.22□□□□□ -1.73
USP28-213ENST00000544967 GRPP07492 148 aa4.22□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 103.8 ms