RNA–Protein interactions for RNA: ENST00000533222.5

CD44-236, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 581 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-236ENST00000533222 C12orf74Q32Q52 190 aa4.32□□□□□ -1.72
CD44-236ENST00000533222 FAM219BQ5XKK7 198 aa4.32□□□□□ -1.72
CD44-236ENST00000533222 ZNF841Q6ZN19 808 aa4.32□□□□□ -1.72
CD44-236ENST00000533222 SDIM1Q6ZPB5 146 aa4.32□□□□□ -1.72
CD44-236ENST00000533222 DGAT2L6Q6ZPD8 337 aa4.32□□□□□ -1.72
CD44-236ENST00000533222 C6orf201Q7Z4U5 140 aa4.32□□□□□ -1.72
CD44-236ENST00000533222 UBE2E3Q969T4 207 aa4.32□□□□□ -1.72
CD44-236ENST00000533222 PEMTQ9UBM1 199 aa4.32□□□□□ -1.72
CD44-236ENST00000533222 V9GYV3 84 aa4.32□□□□□ -1.72
CD44-236ENST00000533222 GREB1Q4ZG55 1949 aa4.32□□□□□ -1.72
CD44-236ENST00000533222 PLXNA2O75051 1894 aa4.31□□□□□ -1.72
CD44-236ENST00000533222 PLXNB2O15031 1838 aa4.31□□□□□ -1.72
CD44-236ENST00000533222 NUP98P52948 1817 aa4.31□□□□□ -1.72
CD44-236ENST00000533222 TRAV17A0A0B4J275 112 aa4.31□□□□□ -1.72
CD44-236ENST00000533222 FAM236AA0A1B0GUQ0 79 aa4.31□□□□□ -1.72
CD44-236ENST00000533222 FAM236BA0A1B0GV22 79 aa4.31□□□□□ -1.72
CD44-236ENST00000533222 TMEM14DPA8MWL7 114 aa4.31□□□□□ -1.72
CD44-236ENST00000533222 C11orf94C9JXX5 98 aa4.31□□□□□ -1.72
CD44-236ENST00000533222 M0R1B8 84 aa4.31□□□□□ -1.72
CD44-236ENST00000533222 CXCL13O43927 109 aa4.31□□□□□ -1.72
CD44-236ENST00000533222 PGLYRP1O75594 196 aaPredicted RBP4.31□□□□□ -1.72
CD44-236ENST00000533222 C1orf105O95561 183 aa4.31□□□□□ -1.72
CD44-236ENST00000533222 COX6A1P12074 109 aa4.31□□□□□ -1.72
CD44-236ENST00000533222 HLA-DOBP13765 273 aa4.31□□□□□ -1.72
CD44-236ENST00000533222 COX5AP20674 150 aa4.31□□□□□ -1.72
CD44-236ENST00000533222 ARL16Q0P5N6 197 aa4.31□□□□□ -1.72
CD44-236ENST00000533222 RTL8BQ17RB0 113 aa4.31□□□□□ -1.72
CD44-236ENST00000533222 MARCH3Q86UD3 253 aa4.31□□□□□ -1.72
CD44-236ENST00000533222 EXOC3-AS1Q8N2X6 119 aa4.31□□□□□ -1.72
CD44-236ENST00000533222 WDR31Q8NA23 367 aa4.31□□□□□ -1.72
CD44-236ENST00000533222 MPLKIPQ8TAP9 179 aa4.31□□□□□ -1.72
CD44-236ENST00000533222 IFI27L1Q96BM0 104 aa4.31□□□□□ -1.72
CD44-236ENST00000533222 C2orf48Q96LS8 159 aa4.31□□□□□ -1.72
CD44-236ENST00000533222 ODF3Q96PU9 254 aa4.31□□□□□ -1.72
CD44-236ENST00000533222 GPX7Q96SL4 187 aaPredicted RBP4.31□□□□□ -1.72
CD44-236ENST00000533222 KXD1Q9BQD3 176 aa4.31□□□□□ -1.72
CD44-236ENST00000533222 STARD5Q9NSY2 213 aa4.31□□□□□ -1.72
CD44-236ENST00000533222 COL16A1Q07092 1604 aaPredicted RBP4.31□□□□□ -1.72
CD44-236ENST00000533222 TRAV8-4A0A0B4J246 113 aa4.3□□□□□ -1.72
CD44-236ENST00000533222 A0A1B0GTH9 108 aa4.3□□□□□ -1.72
CD44-236ENST00000533222 MYMXA0A1B0GTQ4 84 aa4.3□□□□□ -1.72
CD44-236ENST00000533222 A0A1W2PPK0 400 aa4.3□□□□□ -1.72
CD44-236ENST00000533222 RBAKDNA6NC62 111 aa4.3□□□□□ -1.72
CD44-236ENST00000533222 C15orf62A8K5M9 175 aa4.3□□□□□ -1.72
CD44-236ENST00000533222 SPINT2O43291 252 aa4.3□□□□□ -1.72
CD44-236ENST00000533222 NGFP01138 241 aa4.3□□□□□ -1.72
CD44-236ENST00000533222 IL4P05112 153 aa4.3□□□□□ -1.72
CD44-236ENST00000533222 ASAH2BP0C7U1 165 aa4.3□□□□□ -1.72
CD44-236ENST00000533222 IL9P15248 144 aa4.3□□□□□ -1.72
CD44-236ENST00000533222 HOXD3P31249 432 aaPredicted RBP4.3□□□□□ -1.72
CD44-236ENST00000533222 DYNLT3P51808 116 aa4.3□□□□□ -1.72
CD44-236ENST00000533222 NPC2P61916 151 aa4.3□□□□□ -1.72
CD44-236ENST00000533222 OR1C1Q15619 314 aa4.3□□□□□ -1.72
CD44-236ENST00000533222 FKBP1CQ5VVH2 108 aa4.3□□□□□ -1.72
CD44-236ENST00000533222 PLPP4Q5VZY2 271 aa4.3□□□□□ -1.72
CD44-236ENST00000533222 C5orf38Q86SI9 138 aa4.3□□□□□ -1.72
CD44-236ENST00000533222 LINC00643Q86TS7 51 aa4.3□□□□□ -1.72
CD44-236ENST00000533222 PIANPQ8IYJ0 282 aa4.3□□□□□ -1.72
CD44-236ENST00000533222 VKORC1L1Q8N0U8 176 aa4.3□□□□□ -1.72
CD44-236ENST00000533222 FAM19A2Q8N3H0 131 aa4.3□□□□□ -1.72
CD44-236ENST00000533222 OR52N5Q8NH56 324 aa4.3□□□□□ -1.72
CD44-236ENST00000533222 SSMEM1Q8WWF3 244 aa4.3□□□□□ -1.72
CD44-236ENST00000533222 C4orf45Q96LM5 186 aa4.3□□□□□ -1.72
CD44-236ENST00000533222 NMNAT3Q96T66 252 aa4.3□□□□□ -1.72
CD44-236ENST00000533222 TRGV9Q99603 122 aa4.3□□□□□ -1.72
CD44-236ENST00000533222 FAM173AQ9BQD7 235 aa4.3□□□□□ -1.72
CD44-236ENST00000533222 PRSS27Q9BQR3 290 aa4.3□□□□□ -1.72
CD44-236ENST00000533222 CHAC1Q9BUX1 264 aa4.3□□□□□ -1.72
CD44-236ENST00000533222 CXCL16Q9H2A7 254 aa4.3□□□□□ -1.72
CD44-236ENST00000533222 PDFQ9HBH1 243 aa4.3□□□□□ -1.72
CD44-236ENST00000533222 RETNQ9HD89 108 aa4.3□□□□□ -1.72
CD44-236ENST00000533222 PKIGQ9Y2B9 76 aa4.3□□□□□ -1.72
CD44-236ENST00000533222 KIAA2026Q5HYC2 2103 aa4.3□□□□□ -1.72
CD44-236ENST00000533222 IGHV3OR15-7A0A075B7D8 119 aa4.29□□□□□ -1.72
CD44-236ENST00000533222 TMEM150CB9EJG8 249 aa4.29□□□□□ -1.72
CD44-236ENST00000533222 LGALS9O00182 355 aa4.29□□□□□ -1.72
CD44-236ENST00000533222 HMGN4O00479 90 aa4.29□□□□□ -1.72
CD44-236ENST00000533222 UPK2O00526 184 aa4.29□□□□□ -1.72
CD44-236ENST00000533222 SLC25A14O95258 325 aaPredicted RBP4.29□□□□□ -1.72
CD44-236ENST00000533222 IGF1P05019 195 aa4.29□□□□□ -1.72
CD44-236ENST00000533222 CD7P09564 240 aa4.29□□□□□ -1.72
CD44-236ENST00000533222 IFI6P09912 130 aa4.29□□□□□ -1.72
CD44-236ENST00000533222 GCHFRP30047 84 aa4.29□□□□□ -1.72
CD44-236ENST00000533222 GNB1P62873 340 aa4.29□□□□□ -1.72
CD44-236ENST00000533222 MRPL55Q7Z7F7 128 aaKnown RBP4.29□□□□□ -1.72
CD44-236ENST00000533222 HMGN2P46Q86SG4 172 aa4.29□□□□□ -1.72
CD44-236ENST00000533222 SLC22A24Q8N4F4 322 aa4.29□□□□□ -1.72
CD44-236ENST00000533222 RPRMLQ8N4K4 120 aa4.29□□□□□ -1.72
CD44-236ENST00000533222 RFESDQ8TAC1 157 aa4.29□□□□□ -1.72
CD44-236ENST00000533222 TAF15Q92804 592 aaKnown RBP eCLIP4.29□□□□□ -1.72
CD44-236ENST00000533222 URB1-AS1Q96HZ7 61 aa4.29□□□□□ -1.72
CD44-236ENST00000533222 FOXC2Q99958 501 aa4.29□□□□□ -1.72
CD44-236ENST00000533222 C1QTNF5Q9BXJ0 243 aa4.29□□□□□ -1.72
CD44-236ENST00000533222 ZNF256Q9Y2P7 627 aaPredicted RBP4.29□□□□□ -1.72
CD44-236ENST00000533222 EXPH5Q8NEV8 1989 aa4.29□□□□□ -1.72
CD44-236ENST00000533222 HCFC1P51610 2035 aa4.28□□□□□ -1.72
CD44-236ENST00000533222 TRAV8-2A0A0B4J237 113 aa4.28□□□□□ -1.72
CD44-236ENST00000533222 A0A1B0GXF2 115 aa4.28□□□□□ -1.72
CD44-236ENST00000533222 NPIPB11E5RHQ5 1161 aa4.28□□□□□ -1.72
CD44-236ENST00000533222 H3BT86 120 aa4.28□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 122.2 ms