RNA–Protein interactions for RNA: ENST00000527889.5

CD44-226, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-226ENST00000527889 DEFB113Q30KQ7 82 aa3.29□□□□□ -1.88
CD44-226ENST00000527889 SPANXN5Q5MJ07 72 aa3.29□□□□□ -1.88
CD44-226ENST00000527889 FAM74A1Q5RGS3 127 aa3.29□□□□□ -1.88
CD44-226ENST00000527889 RUSC1-AS1Q66K80 236 aa3.29□□□□□ -1.88
CD44-226ENST00000527889 RPL7L1Q6DKI1 246 aaKnown RBP3.29□□□□□ -1.88
CD44-226ENST00000527889 TEX261Q6UWH6 196 aa3.29□□□□□ -1.88
CD44-226ENST00000527889 ALKAL2Q6UX46 152 aa3.29□□□□□ -1.88
CD44-226ENST00000527889 PDPNQ86YL7 162 aa3.29□□□□□ -1.88
CD44-226ENST00000527889 APRG1Q8IVJ8 170 aa3.29□□□□□ -1.88
CD44-226ENST00000527889 TMEM252Q8N6L7 170 aa3.29□□□□□ -1.88
CD44-226ENST00000527889 OR11H6Q8NGC7 330 aa3.29□□□□□ -1.88
CD44-226ENST00000527889 MPLKIPQ8TAP9 179 aa3.29□□□□□ -1.88
CD44-226ENST00000527889 SFT2D1Q8WV19 159 aa3.29□□□□□ -1.88
CD44-226ENST00000527889 FLYWCH2Q96CP2 140 aaKnown RBP3.29□□□□□ -1.88
CD44-226ENST00000527889 SGK494Q96LW2 274 aa3.29□□□□□ -1.88
CD44-226ENST00000527889 OR4C12Q96R67 309 aa3.29□□□□□ -1.88
CD44-226ENST00000527889 CYTL1Q9NRR1 136 aa3.29□□□□□ -1.88
CD44-226ENST00000527889 LYRM2Q9NU23 88 aaPredicted RBP3.29□□□□□ -1.88
CD44-226ENST00000527889 PSENENQ9NZ42 101 aa3.29□□□□□ -1.88
CD44-226ENST00000527889 DPM3Q9P2X0 92 aa3.29□□□□□ -1.88
CD44-226ENST00000527889 TCF19Q9Y242 345 aa3.29□□□□□ -1.88
CD44-226ENST00000527889 RFNGQ9Y644 331 aa3.29□□□□□ -1.88
CD44-226ENST00000527889 U3KQ87 197 aa3.29□□□□□ -1.88
CD44-226ENST00000527889 TRAV40A0A0B4J280 105 aa3.28□□□□□ -1.88
CD44-226ENST00000527889 CENPVL3A0A0U1RRI6 287 aa3.28□□□□□ -1.88
CD44-226ENST00000527889 E7EUB6 86 aa3.28□□□□□ -1.88
CD44-226ENST00000527889 H3BTX0 84 aa3.28□□□□□ -1.88
CD44-226ENST00000527889 VENTXO95231 258 aa3.28□□□□□ -1.88
CD44-226ENST00000527889 TSPAN13O95857 204 aa3.28□□□□□ -1.88
CD44-226ENST00000527889 IFNA1P01562 189 aa3.28□□□□□ -1.88
CD44-226ENST00000527889 IGKV1D-33P01593 117 aa3.28□□□□□ -1.88
CD44-226ENST00000527889 IGKV1-33P01594 117 aa3.28□□□□□ -1.88
CD44-226ENST00000527889 MSMBP08118 114 aa3.28□□□□□ -1.88
CD44-226ENST00000527889 OR8U8P0C7N1 319 aa3.28□□□□□ -1.88
CD44-226ENST00000527889 IGHV4-38-2P0DP08 117 aa3.28□□□□□ -1.88
CD44-226ENST00000527889 HIST1H1EP10412 219 aaKnown RBP3.28□□□□□ -1.88
CD44-226ENST00000527889 DDTP30046 118 aa3.28□□□□□ -1.88
CD44-226ENST00000527889 S100A7P31151 101 aa3.28□□□□□ -1.88
CD44-226ENST00000527889 SAA4P35542 130 aa3.28□□□□□ -1.88
CD44-226ENST00000527889 VDAC2P45880 294 aaPredicted RBP3.28□□□□□ -1.88
CD44-226ENST00000527889 UBE2E1P51965 193 aa3.28□□□□□ -1.88
CD44-226ENST00000527889 GNB1P62873 340 aa3.28□□□□□ -1.88
CD44-226ENST00000527889 RPL8P62917 257 aaKnown RBP3.28□□□□□ -1.88
CD44-226ENST00000527889 CX3CL1P78423 397 aa3.28□□□□□ -1.88
CD44-226ENST00000527889 KIAA0141Q14154 515 aaPredicted RBP3.28□□□□□ -1.88
CD44-226ENST00000527889 HES1Q14469 280 aa3.28□□□□□ -1.88
CD44-226ENST00000527889 MRGPRG-AS1Q2M3A8 158 aa3.28□□□□□ -1.88
CD44-226ENST00000527889 VMA21Q3ZAQ7 101 aa3.28□□□□□ -1.88
CD44-226ENST00000527889 TCTEX1D4Q5JR98 221 aa3.28□□□□□ -1.88
CD44-226ENST00000527889 C10orf55Q5SWW7 151 aa3.28□□□□□ -1.88
CD44-226ENST00000527889 FAM120AOSQ5T036 256 aa3.28□□□□□ -1.88
CD44-226ENST00000527889 FAM78BQ5VT40 261 aa3.28□□□□□ -1.88
CD44-226ENST00000527889 BRD3OSQ6XYD6 125 aa3.28□□□□□ -1.88
CD44-226ENST00000527889 COMMD7Q86VX2 200 aa3.28□□□□□ -1.88
CD44-226ENST00000527889 MMD2Q8IY49 270 aa3.28□□□□□ -1.88
CD44-226ENST00000527889 OR4C13Q8NGP0 309 aa3.28□□□□□ -1.88
CD44-226ENST00000527889 OR1S2Q8NGQ3 325 aa3.28□□□□□ -1.88
CD44-226ENST00000527889 OR5C1Q8NGR4 320 aa3.28□□□□□ -1.88
CD44-226ENST00000527889 TMED6Q8WW62 240 aa3.28□□□□□ -1.88
CD44-226ENST00000527889 TMEM37Q8WXS4 190 aa3.28□□□□□ -1.88
CD44-226ENST00000527889 SMIM8Q96KF7 97 aa3.28□□□□□ -1.88
CD44-226ENST00000527889 CLCC1Q96S66 551 aa3.28□□□□□ -1.88
CD44-226ENST00000527889 SLC25A33Q9BSK2 321 aa3.28□□□□□ -1.88
CD44-226ENST00000527889 SLC25A31Q9H0C2 315 aa3.28□□□□□ -1.88
CD44-226ENST00000527889 FBXL15Q9H469 300 aa3.28□□□□□ -1.88
CD44-226ENST00000527889 ENY2Q9NPA8 101 aa3.28□□□□□ -1.88
CD44-226ENST00000527889 TMEM14BQ9NUH8 114 aa3.28□□□□□ -1.88
CD44-226ENST00000527889 BET1LQ9NYM9 111 aa3.28□□□□□ -1.88
CD44-226ENST00000527889 PRNDQ9UKY0 176 aa3.28□□□□□ -1.88
CD44-226ENST00000527889 OR51B2Q9Y5P1 312 aa3.28□□□□□ -1.88
CD44-226ENST00000527889 SOX21Q9Y651 276 aaPredicted RBP3.28□□□□□ -1.88
CD44-226ENST00000527889 BORCS7-ASMTA0A0B4J1R7 106 aa3.27□□□□□ -1.89
CD44-226ENST00000527889 IGHV1-69DA0A0B4J2H0 117 aa3.27□□□□□ -1.89
CD44-226ENST00000527889 KIR2DL5BA0A0G2JN68 375 aa3.27□□□□□ -1.89
CD44-226ENST00000527889 KIR2DL5BA0A0G2JPC4 375 aa3.27□□□□□ -1.89
CD44-226ENST00000527889 TEX50A0A1B0GTY4 177 aa3.27□□□□□ -1.89
CD44-226ENST00000527889 UBE2L5PA0A1B0GUS4 154 aa3.27□□□□□ -1.89
CD44-226ENST00000527889 A0A1B0GW64 132 aa3.27□□□□□ -1.89
CD44-226ENST00000527889 RPS10-NUDT3A0A1W2PQS6 291 aa3.27□□□□□ -1.89
CD44-226ENST00000527889 C20orf202A1L168 122 aa3.27□□□□□ -1.89
CD44-226ENST00000527889 SMIM9A6NGZ8 99 aa3.27□□□□□ -1.89
CD44-226ENST00000527889 B4DSR2 109 aa3.27□□□□□ -1.89
CD44-226ENST00000527889 INAFM1C9JVW0 142 aa3.27□□□□□ -1.89
CD44-226ENST00000527889 I3L521 148 aa3.27□□□□□ -1.89
CD44-226ENST00000527889 FCN1O00602 326 aa3.27□□□□□ -1.89
CD44-226ENST00000527889 TAAR5O14804 337 aa3.27□□□□□ -1.89
CD44-226ENST00000527889 NPFFO15130 113 aa3.27□□□□□ -1.89
CD44-226ENST00000527889 NDUFA7O95182 113 aa3.27□□□□□ -1.89
CD44-226ENST00000527889 CA2P00918 260 aa3.27□□□□□ -1.89
CD44-226ENST00000527889 IGHV1-69P01742 117 aa3.27□□□□□ -1.89
CD44-226ENST00000527889 TYMSP04818 313 aa3.27□□□□□ -1.89
CD44-226ENST00000527889 REG1AP05451 166 aa3.27□□□□□ -1.89
CD44-226ENST00000527889 FAM106CPP0CH98 169 aa3.27□□□□□ -1.89
CD44-226ENST00000527889 C8orf88P0DMB2 117 aa3.27□□□□□ -1.89
CD44-226ENST00000527889 APELAP0DMC3 54 aa3.27□□□□□ -1.89
CD44-226ENST00000527889 OR13C7P0DN81 318 aa3.27□□□□□ -1.89
CD44-226ENST00000527889 TPT1P13693 172 aaKnown RBP3.27□□□□□ -1.89
CD44-226ENST00000527889 LGALS7P47929 136 aa3.27□□□□□ -1.89
CD44-226ENST00000527889 SULT1A1P50225 295 aa3.27□□□□□ -1.89
CD44-226ENST00000527889 SULT1A2P50226 295 aa3.27□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 88.7 ms