RNA–Protein interactions for RNA: ENST00000527797.6

VPS28-208, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,609 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-208ENST00000527797 FAM106AQ4KMX7 169 aa16.14■□□□□ 0.17
VPS28-208ENST00000527797 SOHLH1Q5JUK2 328 aa16.14■□□□□ 0.17
VPS28-208ENST00000527797 UNQ9165/PRO28630Q6UXU0 137 aa16.14■□□□□ 0.17
VPS28-208ENST00000527797 OR4F17Q8NGA8 305 aa16.14■□□□□ 0.17
VPS28-208ENST00000527797 MTORP42345 2549 aa16.13■□□□□ 0.17
VPS28-208ENST00000527797 ZNF320A2RRD8 509 aa16.13■□□□□ 0.17
VPS28-208ENST00000527797 TMEM250H0YL14 139 aa16.13■□□□□ 0.17
VPS28-208ENST00000527797 ZNF207O43670 478 aaKnown RBP16.13■□□□□ 0.17
VPS28-208ENST00000527797 RPL7P18124 248 aaKnown RBP16.13■□□□□ 0.17
VPS28-208ENST00000527797 CRYBB3P26998 211 aa16.13■□□□□ 0.17
VPS28-208ENST00000527797 RPEL1Q2QD12 228 aa16.13■□□□□ 0.17
VPS28-208ENST00000527797 C10orf91Q5T1B1 145 aa16.13■□□□□ 0.17
VPS28-208ENST00000527797 GPHB5Q86YW7 130 aa16.13■□□□□ 0.17
VPS28-208ENST00000527797 OR8I2Q8N0Y5 310 aa16.13■□□□□ 0.17
VPS28-208ENST00000527797 BLNKQ8WV28 456 aa16.13■□□□□ 0.17
VPS28-208ENST00000527797 TMEM190Q8WZ59 177 aa16.13■□□□□ 0.17
VPS28-208ENST00000527797 F6UZH7 168 aa16.12■□□□□ 0.17
VPS28-208ENST00000527797 APOC3P02656 99 aa16.12■□□□□ 0.17
VPS28-208ENST00000527797 SNRPCP09234 159 aaKnown RBP16.12■□□□□ 0.17
VPS28-208ENST00000527797 KHDC1LQ5JSQ8 128 aa16.12■□□□□ 0.17
VPS28-208ENST00000527797 WFDC12Q8WWY7 111 aa16.12■□□□□ 0.17
VPS28-208ENST00000527797 NKX6-2Q9C056 277 aaPredicted RBP16.12■□□□□ 0.17
VPS28-208ENST00000527797 CARHSP1Q9Y2V2 147 aaKnown RBP16.12■□□□□ 0.17
VPS28-208ENST00000527797 BUB3O43684 328 aa16.12■□□□□ 0.17
VPS28-208ENST00000527797 C1orf194Q5T5A4 169 aa16.12■□□□□ 0.17
VPS28-208ENST00000527797 C4orf3Q8WVX3 66 aa16.12■□□□□ 0.17
VPS28-208ENST00000527797 RNF114Q9Y508 228 aa16.12■□□□□ 0.17
VPS28-208ENST00000527797 U3KQE9 123 aa16.12■□□□□ 0.17
VPS28-208ENST00000527797 H3BQ15 152 aa16.11■□□□□ 0.17
VPS28-208ENST00000527797 HAX1O00165 279 aa16.11■□□□□ 0.17
VPS28-208ENST00000527797 MRPS12O15235 138 aaKnown RBP16.11■□□□□ 0.17
VPS28-208ENST00000527797 SUMO1P63165 101 aaKnown RBP16.11■□□□□ 0.17
VPS28-208ENST00000527797 ZNF586Q9NXT0 402 aa16.11■□□□□ 0.17
VPS28-208ENST00000527797 IGHV4OR15-8A0A075B7B6 117 aa16.1■□□□□ 0.17
VPS28-208ENST00000527797 A0A087WW49 117 aa16.1■□□□□ 0.17
VPS28-208ENST00000527797 IGLC2P0DOY2 106 aa16.1■□□□□ 0.17
VPS28-208ENST00000527797 RANP62826 216 aaKnown RBP16.1■□□□□ 0.17
VPS28-208ENST00000527797 GPR82Q96P67 336 aa16.1■□□□□ 0.17
VPS28-208ENST00000527797 H3BTX0 84 aa16.09■□□□□ 0.17
VPS28-208ENST00000527797 APOHP02749 345 aaPredicted RBP16.09■□□□□ 0.17
VPS28-208ENST00000527797 SRSF2Q01130 221 aaKnown RBP16.09■□□□□ 0.17
VPS28-208ENST00000527797 FAM90A2PQ658T7 463 aa16.09■□□□□ 0.17
VPS28-208ENST00000527797 C18orf65Q6ZTR6 163 aa16.09■□□□□ 0.17
VPS28-208ENST00000527797 CCDC28AQ8IWP9 274 aa16.09■□□□□ 0.17
VPS28-208ENST00000527797 TRBV19A0A075B6N1 114 aa16.08■□□□□ 0.17
VPS28-208ENST00000527797 IGHV3OR16-13A0A075B7E8 117 aa16.08■□□□□ 0.17
VPS28-208ENST00000527797 IGHV3-49A0A0A0MS15 119 aa16.08■□□□□ 0.17
VPS28-208ENST00000527797 IGHV3-74A0A0B4J1X5 117 aa16.08■□□□□ 0.17
VPS28-208ENST00000527797 IGHV3-66A0A0C4DH42 116 aa16.08■□□□□ 0.17
VPS28-208ENST00000527797 GGTLC3B5MD39 225 aa16.08■□□□□ 0.17
VPS28-208ENST00000527797 K7EMT4 169 aa16.08■□□□□ 0.17
VPS28-208ENST00000527797 CD28P10747 220 aa16.08■□□□□ 0.17
VPS28-208ENST00000527797 DAZ1Q9NQZ3 744 aaKnown RBP16.08■□□□□ 0.17
VPS28-208ENST00000527797 UFC1Q9Y3C8 167 aa16.08■□□□□ 0.17
VPS28-208ENST00000527797 A0A1W2PS18 150 aa16.08■□□□□ 0.16
VPS28-208ENST00000527797 SVBPQ8N300 66 aa16.08■□□□□ 0.16
VPS28-208ENST00000527797 KLHL30-AS1Q8NEE0 82 aa16.08■□□□□ 0.16
VPS28-208ENST00000527797 ATF4P18848 351 aaPredicted RBP16.07■□□□□ 0.16
VPS28-208ENST00000527797 HOXD3P31249 432 aaPredicted RBP16.07■□□□□ 0.16
VPS28-208ENST00000527797 GALR1P47211 349 aa16.07■□□□□ 0.16
VPS28-208ENST00000527797 PROK1P58294 105 aa16.07■□□□□ 0.16
VPS28-208ENST00000527797 RPUSD4Q96CM3 377 aaKnown RBP16.07■□□□□ 0.16
VPS28-208ENST00000527797 GRAMD2BQ96HH9 432 aa16.07■□□□□ 0.16
VPS28-208ENST00000527797 FN1P02751 2386 aaKnown RBP16.07■□□□□ 0.16
VPS28-208ENST00000527797 SCO2A0A1W2PP80 73 aa16.06■□□□□ 0.16
VPS28-208ENST00000527797 PGPA6NDG6 321 aa16.06■□□□□ 0.16
VPS28-208ENST00000527797 LINC01619G3V211 115 aa16.06■□□□□ 0.16
VPS28-208ENST00000527797 MYCNOSP40205 109 aa16.06■□□□□ 0.16
VPS28-208ENST00000527797 GUCA2BQ16661 112 aa16.06■□□□□ 0.16
VPS28-208ENST00000527797 ZNF674Q2M3X9 581 aa16.06■□□□□ 0.16
VPS28-208ENST00000527797 TM4SF20Q53R12 229 aa16.06■□□□□ 0.16
VPS28-208ENST00000527797 C16orf54Q6UWD8 224 aa16.06■□□□□ 0.16
VPS28-208ENST00000527797 REC114Q7Z4M0 266 aa16.06■□□□□ 0.16
VPS28-208ENST00000527797 C11orf44Q8N8P7 122 aa16.06■□□□□ 0.16
VPS28-208ENST00000527797 OR1N2Q8NGR9 330 aa16.06■□□□□ 0.16
VPS28-208ENST00000527797 DPF1Q92782 380 aa16.06■□□□□ 0.16
VPS28-208ENST00000527797 C17orf77Q96MU5 243 aa16.06■□□□□ 0.16
VPS28-208ENST00000527797 ELOVL1Q9BW60 279 aa16.06■□□□□ 0.16
VPS28-208ENST00000527797 Q9H3A6 140 aa16.06■□□□□ 0.16
VPS28-208ENST00000527797 SMAD5-AS1Q9Y6J3 95 aa16.06■□□□□ 0.16
VPS28-208ENST00000527797 IGHV7-4-1A0A0J9YVY3 117 aa16.05■□□□□ 0.16
VPS28-208ENST00000527797 ZNF785A8K8V0 405 aa16.05■□□□□ 0.16
VPS28-208ENST00000527797 ZNF727A8MUV8 499 aa16.05■□□□□ 0.16
VPS28-208ENST00000527797 LGALS9O00182 355 aa16.05■□□□□ 0.16
VPS28-208ENST00000527797 NDUFB4O95168 129 aa16.05■□□□□ 0.16
VPS28-208ENST00000527797 PDE6HQ13956 83 aa16.05■□□□□ 0.16
VPS28-208ENST00000527797 FAM74A3Q4VXF1 159 aa16.05■□□□□ 0.16
VPS28-208ENST00000527797 LYPD1Q8N2G4 141 aa16.05■□□□□ 0.16
VPS28-208ENST00000527797 OR11H1Q8NG94 326 aa16.05■□□□□ 0.16
VPS28-208ENST00000527797 C11orf52Q96A22 123 aa16.05■□□□□ 0.16
VPS28-208ENST00000527797 TCEAL7Q9BRU2 100 aa16.05■□□□□ 0.16
VPS28-208ENST00000527797 PARLQ9H300 379 aa16.05■□□□□ 0.16
VPS28-208ENST00000527797 OTORQ9NRC9 128 aa16.05■□□□□ 0.16
VPS28-208ENST00000527797 TSSC4Q9Y5U2 329 aaPredicted RBP16.05■□□□□ 0.16
VPS28-208ENST00000527797 DEFB136Q30KP8 78 aa16.05■□□□□ 0.16
VPS28-208ENST00000527797 C1QL4Q86Z23 238 aa16.05■□□□□ 0.16
VPS28-208ENST00000527797 SMIM7Q9BQ49 75 aa16.05■□□□□ 0.16
VPS28-208ENST00000527797 SLC25A5P05141 298 aaKnown RBP16.04■□□□□ 0.16
VPS28-208ENST00000527797 SYNJ2BPP57105 145 aa16.04■□□□□ 0.16
VPS28-208ENST00000527797 KLF5Q13887 457 aaPredicted RBP16.04■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms