RNA–Protein interactions for RNA: ENST00000493455.6

HPS4-216, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 3

Gene HPS4, Length 986 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-216ENST00000493455 OR10G7Q8NGN6 311 aa11.88□□□□□ -0.51
HPS4-216ENST00000493455 GATAD1Q8WUU5 269 aa11.88□□□□□ -0.51
HPS4-216ENST00000493455 GLMPQ8WWB7 406 aa11.88□□□□□ -0.51
HPS4-216ENST00000493455 A0A1W2PPV4 95 aa11.87□□□□□ -0.51
HPS4-216ENST00000493455 DNASE2O00115 360 aaPredicted RBP11.87□□□□□ -0.51
HPS4-216ENST00000493455 HMGB3O15347 200 aaKnown RBP11.87□□□□□ -0.51
HPS4-216ENST00000493455 M6PRP20645 277 aa11.87□□□□□ -0.51
HPS4-216ENST00000493455 SAMD5Q5TGI4 173 aa11.87□□□□□ -0.51
HPS4-216ENST00000493455 SLC51BQ86UW2 128 aa11.87□□□□□ -0.51
HPS4-216ENST00000493455 TMED6Q8WW62 240 aa11.87□□□□□ -0.51
HPS4-216ENST00000493455 SEPSECSQ9HD40 501 aaKnown RBP11.87□□□□□ -0.51
HPS4-216ENST00000493455 FUT9Q9Y231 359 aa11.87□□□□□ -0.51
HPS4-216ENST00000493455 PKD1L1Q8TDX9 2849 aa11.87□□□□□ -0.51
HPS4-216ENST00000493455 HELTA6NFD8 242 aa11.86□□□□□ -0.51
HPS4-216ENST00000493455 ZNF785A8K8V0 405 aa11.86□□□□□ -0.51
HPS4-216ENST00000493455 SPP1P10451 314 aa11.86□□□□□ -0.51
HPS4-216ENST00000493455 ATF4P18848 351 aaPredicted RBP11.86□□□□□ -0.51
HPS4-216ENST00000493455 GALR1P47211 349 aa11.86□□□□□ -0.51
HPS4-216ENST00000493455 RHOBP62745 196 aa11.86□□□□□ -0.51
HPS4-216ENST00000493455 SERF2P84101 59 aa11.86□□□□□ -0.51
HPS4-216ENST00000493455 TMEM41BQ5BJD5 291 aa11.86□□□□□ -0.51
HPS4-216ENST00000493455 OR2K2Q8NGT1 345 aa11.86□□□□□ -0.51
HPS4-216ENST00000493455 PRR25Q96S07 402 aa11.86□□□□□ -0.51
HPS4-216ENST00000493455 H3BTX0 84 aa11.85□□□□□ -0.51
HPS4-216ENST00000493455 GP9P14770 177 aa11.85□□□□□ -0.51
HPS4-216ENST00000493455 CDC34P49427 236 aaPredicted RBP11.85□□□□□ -0.51
HPS4-216ENST00000493455 PAFAH1B2P68402 229 aa11.85□□□□□ -0.51
HPS4-216ENST00000493455 C1orf194Q5T5A4 169 aa11.85□□□□□ -0.51
HPS4-216ENST00000493455 STOML3Q8TAV4 291 aa11.85□□□□□ -0.51
HPS4-216ENST00000493455 MRPL32Q9BYC8 188 aaKnown RBP11.85□□□□□ -0.51
HPS4-216ENST00000493455 MS4A6AQ9H2W1 248 aa11.85□□□□□ -0.51
HPS4-216ENST00000493455 CMYA5Q8N3K9 4069 aa11.85□□□□□ -0.51
HPS4-216ENST00000493455 OR7C2O60412 319 aa11.84□□□□□ -0.51
HPS4-216ENST00000493455 MBP02144 154 aa11.84□□□□□ -0.51
HPS4-216ENST00000493455 PRB2P02812 416 aaPredicted RBP11.84□□□□□ -0.51
HPS4-216ENST00000493455 SEC11BP0C7V7 166 aa11.84□□□□□ -0.51
HPS4-216ENST00000493455 PYYP10082 97 aa11.84□□□□□ -0.51
HPS4-216ENST00000493455 RPL7P18124 248 aaKnown RBP11.84□□□□□ -0.51
HPS4-216ENST00000493455 KRTAP10-11P60412 298 aa11.84□□□□□ -0.51
HPS4-216ENST00000493455 FAM90A2PQ658T7 463 aa11.84□□□□□ -0.51
HPS4-216ENST00000493455 BPIFA4PQ86YQ2 179 aa11.84□□□□□ -0.51
HPS4-216ENST00000493455 SLC25A2Q9BXI2 301 aa11.84□□□□□ -0.51
HPS4-216ENST00000493455 RPRMQ9NS64 109 aa11.84□□□□□ -0.51
HPS4-216ENST00000493455 ZNF256Q9Y2P7 627 aaPredicted RBP11.84□□□□□ -0.51
HPS4-216ENST00000493455 TRAV25A0A0B4J276 109 aa11.83□□□□□ -0.52
HPS4-216ENST00000493455 TSPAN4O14817 238 aa11.83□□□□□ -0.52
HPS4-216ENST00000493455 IQCF2Q8IXL9 164 aa11.83□□□□□ -0.52
HPS4-216ENST00000493455 LRRC20Q8TCA0 184 aa11.83□□□□□ -0.52
HPS4-216ENST00000493455 GPR82Q96P67 336 aa11.83□□□□□ -0.52
HPS4-216ENST00000493455 ACTR3CQ9C0K3 210 aaPredicted RBP11.83□□□□□ -0.52
HPS4-216ENST00000493455 UBQLN2Q9UHD9 624 aa11.83□□□□□ -0.52
HPS4-216ENST00000493455 RNF24Q9Y225 148 aa11.83□□□□□ -0.52
HPS4-216ENST00000493455 SORL1Q92673 2214 aa11.82□□□□□ -0.52
HPS4-216ENST00000493455 OR4C46A6NHA9 309 aa11.82□□□□□ -0.52
HPS4-216ENST00000493455 CD5P06127 495 aa11.82□□□□□ -0.52
HPS4-216ENST00000493455 OR10J4P0C629 311 aa11.82□□□□□ -0.52
HPS4-216ENST00000493455 TAS2R45P59539 299 aa11.82□□□□□ -0.52
HPS4-216ENST00000493455 CD81P60033 236 aa11.82□□□□□ -0.52
HPS4-216ENST00000493455 KHDC3LQ587J8 217 aa11.82□□□□□ -0.52
HPS4-216ENST00000493455 EIF5AL1Q6IS14 154 aaKnown RBP11.82□□□□□ -0.52
HPS4-216ENST00000493455 ALKAL2Q6UX46 152 aa11.82□□□□□ -0.52
HPS4-216ENST00000493455 RPP25LQ8N5L8 163 aaKnown RBP11.82□□□□□ -0.52
HPS4-216ENST00000493455 FAM213BQ8TBF2 198 aa11.82□□□□□ -0.52
HPS4-216ENST00000493455 BLNKQ8WV28 456 aa11.82□□□□□ -0.52
HPS4-216ENST00000493455 SPAG8Q99932 426 aaPredicted RBP11.82□□□□□ -0.52
HPS4-216ENST00000493455 NRN1Q9NPD7 142 aa11.82□□□□□ -0.52
HPS4-216ENST00000493455 PLA2G2EQ9NZK7 142 aa11.82□□□□□ -0.52
HPS4-216ENST00000493455 SMAD5-AS1Q9Y6J3 95 aa11.82□□□□□ -0.52
HPS4-216ENST00000493455 A0A1B0GV50 99 aa11.81□□□□□ -0.52
HPS4-216ENST00000493455 WIPF1O43516 503 aa11.81□□□□□ -0.52
HPS4-216ENST00000493455 FHITP49789 147 aa11.81□□□□□ -0.52
HPS4-216ENST00000493455 BEAN1Q3B7T3 259 aa11.81□□□□□ -0.52
HPS4-216ENST00000493455 FAM74A1Q5RGS3 127 aa11.81□□□□□ -0.52
HPS4-216ENST00000493455 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa11.81□□□□□ -0.52
HPS4-216ENST00000493455 SSX7Q7RTT5 188 aa11.81□□□□□ -0.52
HPS4-216ENST00000493455 FAM24BQ8N5W8 94 aa11.81□□□□□ -0.52
HPS4-216ENST00000493455 RAB24Q969Q5 203 aa11.81□□□□□ -0.52
HPS4-216ENST00000493455 PAXXQ9BUH6 204 aa11.81□□□□□ -0.52
HPS4-216ENST00000493455 OR51M1Q9H341 326 aa11.81□□□□□ -0.52
HPS4-216ENST00000493455 CD7P09564 240 aa11.8□□□□□ -0.52
HPS4-216ENST00000493455 ZNF688P0C7X2 276 aa11.8□□□□□ -0.52
HPS4-216ENST00000493455 FGF8P55075 233 aaPredicted RBP11.8□□□□□ -0.52
HPS4-216ENST00000493455 UBE2L3P68036 154 aaKnown RBP11.8□□□□□ -0.52
HPS4-216ENST00000493455 EGFEM1PQ0D2K5 195 aa11.8□□□□□ -0.52
HPS4-216ENST00000493455 IGFL4Q6B9Z1 124 aa11.8□□□□□ -0.52
HPS4-216ENST00000493455 LCN15Q6UWW0 184 aa11.8□□□□□ -0.52
HPS4-216ENST00000493455 GTSCR1Q86UQ5 136 aa11.8□□□□□ -0.52
HPS4-216ENST00000493455 FAM167A-AS1Q96KT0 104 aa11.8□□□□□ -0.52
HPS4-216ENST00000493455 C16orf92Q96LL3 132 aa11.8□□□□□ -0.52
HPS4-216ENST00000493455 C17orf77Q96MU5 243 aa11.8□□□□□ -0.52
HPS4-216ENST00000493455 ZMAT5Q9UDW3 170 aaKnown RBP11.8□□□□□ -0.52
HPS4-216ENST00000493455 CTXND1A0A1B0GTU2 59 aa11.79□□□□□ -0.52
HPS4-216ENST00000493455 MRPS12O15235 138 aaKnown RBP11.79□□□□□ -0.52
HPS4-216ENST00000493455 ARL14EPLP0DKL9 152 aa11.79□□□□□ -0.52
HPS4-216ENST00000493455 PRB4P10163 310 aaPredicted RBP11.79□□□□□ -0.52
HPS4-216ENST00000493455 ZNF726P1Q15940 193 aa11.79□□□□□ -0.52
HPS4-216ENST00000493455 LINC00052Q96N35 136 aa11.79□□□□□ -0.52
HPS4-216ENST00000493455 WFDC10AQ9H1F0 79 aa11.79□□□□□ -0.52
HPS4-216ENST00000493455 MAP1LC3B2A6NCE7 125 aa11.78□□□□□ -0.52
HPS4-216ENST00000493455 UMAD1C9J7I0 102 aa11.78□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 60.2 ms