RNA–Protein interactions for RNA: ENST00000471834.1

SYNE1-220, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 7,229 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-220ENST00000471834 IBA57Q5T440 356 aaKnown RBP4.29□□□□□ -1.72
SYNE1-220ENST00000471834 ERASQ7Z444 233 aa4.29□□□□□ -1.72
SYNE1-220ENST00000471834 UTRNP46939 3433 aa4.29□□□□□ -1.72
SYNE1-220ENST00000471834 ZCCHC24Q8N2G6 241 aaKnown RBP4.29□□□□□ -1.72
SYNE1-220ENST00000471834 STPG3Q8N7X2 389 aa4.29□□□□□ -1.72
SYNE1-220ENST00000471834 FXYD5Q96DB9 178 aa4.29□□□□□ -1.72
SYNE1-220ENST00000471834 PILRBQ9UKJ0 227 aa4.29□□□□□ -1.72
SYNE1-220ENST00000471834 FAM186AA6NE01 2351 aa4.29□□□□□ -1.72
SYNE1-220ENST00000471834 PPIAL4EA0A075B759 164 aa4.29□□□□□ -1.72
SYNE1-220ENST00000471834 SCO2A0A1W2PP80 73 aa4.29□□□□□ -1.72
SYNE1-220ENST00000471834 PPIAL4DF5H284 164 aa4.29□□□□□ -1.72
SYNE1-220ENST00000471834 CRYGBP07316 175 aa4.29□□□□□ -1.72
SYNE1-220ENST00000471834 PPIAL4FP0DN26 164 aa4.29□□□□□ -1.72
SYNE1-220ENST00000471834 ZNF134P52741 427 aa4.29□□□□□ -1.72
SYNE1-220ENST00000471834 MIC13Q5XKP0 118 aa4.29□□□□□ -1.72
SYNE1-220ENST00000471834 ACP7Q6ZNF0 438 aa4.29□□□□□ -1.72
SYNE1-220ENST00000471834 LYPD1Q8N2G4 141 aa4.29□□□□□ -1.72
SYNE1-220ENST00000471834 LINC01560Q8TB33 94 aa4.29□□□□□ -1.72
SYNE1-220ENST00000471834 HHLA3Q9XRX5 114 aa4.29□□□□□ -1.72
SYNE1-220ENST00000471834 PPIAL4AQ9Y536 164 aa4.29□□□□□ -1.72
SYNE1-220ENST00000471834 GOLGB1Q14789 3259 aaKnown RBP4.29□□□□□ -1.72
SYNE1-220ENST00000471834 MUC21A0A0G2JKD1 596 aa4.29□□□□□ -1.72
SYNE1-220ENST00000471834 MUC21A0A140T8X8 626 aa4.29□□□□□ -1.72
SYNE1-220ENST00000471834 H3BRM9 83 aa4.29□□□□□ -1.72
SYNE1-220ENST00000471834 UPK2O00526 184 aa4.29□□□□□ -1.72
SYNE1-220ENST00000471834 RFPL3SP0C7P2 107 aa4.29□□□□□ -1.72
SYNE1-220ENST00000471834 PPIAL4GP0DN37 164 aa4.29□□□□□ -1.72
SYNE1-220ENST00000471834 MUC21Q5SSG8 566 aa4.29□□□□□ -1.72
SYNE1-220ENST00000471834 WDR82Q6UXN9 313 aa4.29□□□□□ -1.72
SYNE1-220ENST00000471834 OR4A5Q8NH83 315 aa4.29□□□□□ -1.72
SYNE1-220ENST00000471834 RALYQ9UKM9 306 aaKnown RBP4.29□□□□□ -1.72
SYNE1-220ENST00000471834 A0A0G2JMM0 328 aa4.28□□□□□ -1.72
SYNE1-220ENST00000471834 A0A1W2PPB8 328 aa4.28□□□□□ -1.72
SYNE1-220ENST00000471834 KIR3DP1A8MWS1 328 aa4.28□□□□□ -1.72
SYNE1-220ENST00000471834 CENPWQ5EE01 88 aa4.28□□□□□ -1.72
SYNE1-220ENST00000471834 INO80CQ6PI98 192 aaPredicted RBP4.28□□□□□ -1.72
SYNE1-220ENST00000471834 SYT8Q8NBV8 401 aa4.28□□□□□ -1.72
SYNE1-220ENST00000471834 SRCAPQ6ZRS2 3230 aa4.28□□□□□ -1.72
SYNE1-220ENST00000471834 GRIFINA4D1Z8 144 aa4.28□□□□□ -1.72
SYNE1-220ENST00000471834 E9PLD3 99 aa4.28□□□□□ -1.72
SYNE1-220ENST00000471834 G3V4G9 280 aa4.28□□□□□ -1.72
SYNE1-220ENST00000471834 K7EP34 96 aa4.28□□□□□ -1.72
SYNE1-220ENST00000471834 FAM106CPP0CH98 169 aa4.28□□□□□ -1.72
SYNE1-220ENST00000471834 MPV17L2Q567V2 206 aa4.28□□□□□ -1.72
SYNE1-220ENST00000471834 TEX36Q5VZQ5 186 aa4.28□□□□□ -1.72
SYNE1-220ENST00000471834 HIST1H4GQ99525 98 aa4.28□□□□□ -1.72
SYNE1-220ENST00000471834 MAP1BP46821 2468 aaKnown RBP4.28□□□□□ -1.72
SYNE1-220ENST00000471834 A6NDN8 102 aa4.28□□□□□ -1.72
SYNE1-220ENST00000471834 NPFFO15130 113 aa4.28□□□□□ -1.72
SYNE1-220ENST00000471834 IGLC6P0CF74 106 aa4.28□□□□□ -1.72
SYNE1-220ENST00000471834 RNASE4P34096 147 aaKnown RBP4.28□□□□□ -1.72
SYNE1-220ENST00000471834 DLX1P56177 255 aa4.28□□□□□ -1.72
SYNE1-220ENST00000471834 SSBP2P81877 361 aaPredicted RBP4.28□□□□□ -1.72
SYNE1-220ENST00000471834 OR13A1Q8NGR1 328 aa4.28□□□□□ -1.72
SYNE1-220ENST00000471834 NABP2Q9BQ15 211 aa4.28□□□□□ -1.72
SYNE1-220ENST00000471834 KLK5Q9Y337 293 aaPredicted RBP4.28□□□□□ -1.72
SYNE1-220ENST00000471834 ZNF815PA8K554 130 aa4.28□□□□□ -1.72
SYNE1-220ENST00000471834 WNT9BO14905 357 aa4.28□□□□□ -1.72
SYNE1-220ENST00000471834 TSPAN13O95857 204 aa4.28□□□□□ -1.72
SYNE1-220ENST00000471834 SLC25A16P16260 332 aa4.28□□□□□ -1.72
SYNE1-220ENST00000471834 CKS2P33552 79 aa4.28□□□□□ -1.72
SYNE1-220ENST00000471834 PSG9Q00887 426 aa4.28□□□□□ -1.72
SYNE1-220ENST00000471834 ADIPOQQ15848 244 aa4.28□□□□□ -1.72
SYNE1-220ENST00000471834 RPL39P5Q59GN2 51 aa4.28□□□□□ -1.72
SYNE1-220ENST00000471834 TCTEX1D4Q5JR98 221 aa4.28□□□□□ -1.72
SYNE1-220ENST00000471834 IGFBPL1Q8WX77 278 aa4.28□□□□□ -1.72
SYNE1-220ENST00000471834 TMEM191AQ9H0A3 160 aa4.28□□□□□ -1.72
SYNE1-220ENST00000471834 GPR179Q6PRD1 2367 aa4.28□□□□□ -1.72
SYNE1-220ENST00000471834 LOC107984156A0A0G2JMH3 177 aa4.28□□□□□ -1.72
SYNE1-220ENST00000471834 RIPPLY3P57055 190 aa4.28□□□□□ -1.72
SYNE1-220ENST00000471834 RPL32P62910 135 aaKnown RBP4.28□□□□□ -1.72
SYNE1-220ENST00000471834 ATP5G2Q06055 141 aa4.28□□□□□ -1.72
SYNE1-220ENST00000471834 FAM106AQ4KMX7 169 aa4.28□□□□□ -1.72
SYNE1-220ENST00000471834 SLC25A34Q6PIV7 304 aa4.28□□□□□ -1.72
SYNE1-220ENST00000471834 ARL17AQ8IVW1 177 aa4.28□□□□□ -1.72
SYNE1-220ENST00000471834 SRSF8Q9BRL6 282 aaKnown RBP4.28□□□□□ -1.72
SYNE1-220ENST00000471834 TMEM262E9PQX1 116 aa4.28□□□□□ -1.72
SYNE1-220ENST00000471834 NDUFA3O95167 84 aa4.28□□□□□ -1.72
SYNE1-220ENST00000471834 NBL1P41271 181 aa4.28□□□□□ -1.72
SYNE1-220ENST00000471834 TPRP12270 2363 aaKnown RBP4.28□□□□□ -1.73
SYNE1-220ENST00000471834 IGKV3D-20A0A0C4DH25 116 aa4.27□□□□□ -1.73
SYNE1-220ENST00000471834 MOSP00540 346 aa4.27□□□□□ -1.73
SYNE1-220ENST00000471834 WT1P19544 449 aaPredicted RBP4.27□□□□□ -1.73
SYNE1-220ENST00000471834 POM121L12Q8N7R1 296 aa4.27□□□□□ -1.73
SYNE1-220ENST00000471834 RNASE6Q93091 150 aaKnown RBP4.27□□□□□ -1.73
SYNE1-220ENST00000471834 FNDC4Q9H6D8 234 aaPredicted RBP4.27□□□□□ -1.73
SYNE1-220ENST00000471834 KAAG1Q9UBP8 84 aa4.27□□□□□ -1.73
SYNE1-220ENST00000471834 PEF1Q9UBV8 284 aaKnown RBP4.27□□□□□ -1.73
SYNE1-220ENST00000471834 KIAA1644Q3SXP7 199 aa4.27□□□□□ -1.73
SYNE1-220ENST00000471834 FAM74A4Q5TZK3 123 aa4.27□□□□□ -1.73
SYNE1-220ENST00000471834 LINC00305Q7Z4B0 112 aa4.27□□□□□ -1.73
SYNE1-220ENST00000471834 KIR3DL3Q8N743 410 aa4.27□□□□□ -1.73
SYNE1-220ENST00000471834 OR5A1Q8NGJ0 315 aa4.27□□□□□ -1.73
SYNE1-220ENST00000471834 C11orf68Q9H3H3 251 aaKnown RBP4.27□□□□□ -1.73
SYNE1-220ENST00000471834 BEX4Q9NWD9 120 aaPredicted RBP4.27□□□□□ -1.73
SYNE1-220ENST00000471834 K7EM74 188 aa4.27□□□□□ -1.73
SYNE1-220ENST00000471834 SRIP30626 198 aa4.27□□□□□ -1.73
SYNE1-220ENST00000471834 Q96MF0 132 aa4.27□□□□□ -1.73
SYNE1-220ENST00000471834 EP300Q09472 2414 aaPredicted RBP4.27□□□□□ -1.73
SYNE1-220ENST00000471834 TRAV8-6A0A0B4J262 113 aa4.27□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 70 ms