RNA–Protein interactions for RNA: ENST00000395653.9

CLN3-207, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,430 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-207ENST00000395653 Q6ZRG5 221 aa16.02■□□□□ 0.16
CLN3-207ENST00000395653 WWC2-AS2Q96NR7 200 aa16.02■□□□□ 0.16
CLN3-207ENST00000395653 UHRF2Q96PU4 802 aa16.02■□□□□ 0.16
CLN3-207ENST00000395653 ELOA3CA0A087WX78 387 aaPredicted RBP16.02■□□□□ 0.15
CLN3-207ENST00000395653 SOCS3O14543 225 aa16.02■□□□□ 0.15
CLN3-207ENST00000395653 RPL7P18124 248 aaKnown RBP16.02■□□□□ 0.15
CLN3-207ENST00000395653 FGF7P21781 194 aa16.02■□□□□ 0.15
CLN3-207ENST00000395653 RPL12P30050 165 aaKnown RBP16.02■□□□□ 0.15
CLN3-207ENST00000395653 MEOX2P50222 304 aa16.02■□□□□ 0.15
CLN3-207ENST00000395653 MIC13Q5XKP0 118 aa16.02■□□□□ 0.15
CLN3-207ENST00000395653 THAP6Q8TBB0 222 aa16.02■□□□□ 0.15
CLN3-207ENST00000395653 HSPB11Q9Y547 144 aa16.02■□□□□ 0.15
CLN3-207ENST00000395653 COX7A2P2O60397 106 aa16.01■□□□□ 0.15
CLN3-207ENST00000395653 GIPP09681 153 aaPredicted RBP16.01■□□□□ 0.15
CLN3-207ENST00000395653 ID1P41134 155 aa16.01■□□□□ 0.15
CLN3-207ENST00000395653 PSMB3P49720 205 aa16.01■□□□□ 0.15
CLN3-207ENST00000395653 CLINT1Q14677 625 aa16.01■□□□□ 0.15
CLN3-207ENST00000395653 Q6ZWC4 215 aa16.01■□□□□ 0.15
CLN3-207ENST00000395653 TMEM37Q8WXS4 190 aa16.01■□□□□ 0.15
CLN3-207ENST00000395653 RETNQ9HD89 108 aa16.01■□□□□ 0.15
CLN3-207ENST00000395653 LINC00305Q7Z4B0 112 aa16■□□□□ 0.15
CLN3-207ENST00000395653 STHQ8IWL8 128 aa16■□□□□ 0.15
CLN3-207ENST00000395653 RSG1Q9BU20 258 aa16■□□□□ 0.15
CLN3-207ENST00000395653 NPCDR1Q9BY65 106 aa16■□□□□ 0.15
CLN3-207ENST00000395653 ISLRO14498 428 aa15.99■□□□□ 0.15
CLN3-207ENST00000395653 B2MP61769 119 aa15.99■□□□□ 0.15
CLN3-207ENST00000395653 FGL1Q08830 312 aa15.99■□□□□ 0.15
CLN3-207ENST00000395653 C10orf113Q5VZT2 155 aa15.99■□□□□ 0.15
CLN3-207ENST00000395653 OR1L4Q8NGR5 311 aa15.99■□□□□ 0.15
CLN3-207ENST00000395653 C17orf77Q96MU5 243 aa15.99■□□□□ 0.15
CLN3-207ENST00000395653 PFDN5Q99471 154 aa15.99■□□□□ 0.15
CLN3-207ENST00000395653 ATP5SQ99766 215 aa15.99■□□□□ 0.15
CLN3-207ENST00000395653 CSTL1Q9H114 145 aa15.99■□□□□ 0.15
CLN3-207ENST00000395653 SLC39A9Q9NUM3 307 aa15.99■□□□□ 0.15
CLN3-207ENST00000395653 PXMP4Q9Y6I8 212 aa15.99■□□□□ 0.15
CLN3-207ENST00000395653 WDR61Q9GZS3 305 aaKnown RBP15.98■□□□□ 0.15
CLN3-207ENST00000395653 DNAJC4Q9NNZ3 241 aa15.98■□□□□ 0.15
CLN3-207ENST00000395653 TP53TG1Q9Y2A0 90 aa15.98■□□□□ 0.15
CLN3-207ENST00000395653 KNCNA6PVL3 124 aa15.97■□□□□ 0.15
CLN3-207ENST00000395653 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa15.97■□□□□ 0.15
CLN3-207ENST00000395653 TRPT1Q86TN4 253 aaKnown RBP15.97■□□□□ 0.15
CLN3-207ENST00000395653 OVOL2Q9BRP0 275 aa15.97■□□□□ 0.15
CLN3-207ENST00000395653 ATF4P18848 351 aaPredicted RBP15.96■□□□□ 0.15
CLN3-207ENST00000395653 ACTL10Q5JWF8 245 aa15.96■□□□□ 0.15
CLN3-207ENST00000395653 C16orf92Q96LL3 132 aa15.96■□□□□ 0.15
CLN3-207ENST00000395653 KCNIP2Q9NS61 270 aa15.96■□□□□ 0.15
CLN3-207ENST00000395653 A0A087X0K7 114 aa15.95■□□□□ 0.14
CLN3-207ENST00000395653 MRPS12O15235 138 aaKnown RBP15.95■□□□□ 0.14
CLN3-207ENST00000395653 DEFB135Q30KP9 77 aa15.95■□□□□ 0.14
CLN3-207ENST00000395653 GATAD1Q8WUU5 269 aa15.95■□□□□ 0.14
CLN3-207ENST00000395653 LINC00052Q96N35 136 aa15.95■□□□□ 0.14
CLN3-207ENST00000395653 BPIFA4PQ86YQ2 179 aa15.94■□□□□ 0.14
CLN3-207ENST00000395653 ZNF709Q8N972 641 aa15.94■□□□□ 0.14
CLN3-207ENST00000395653 RNF183Q96D59 192 aa15.94■□□□□ 0.14
CLN3-207ENST00000395653 SMIM3Q9BZL3 60 aa15.94■□□□□ 0.14
CLN3-207ENST00000395653 EDA2RQ9HAV5 297 aa15.94■□□□□ 0.14
CLN3-207ENST00000395653 SPRY2O43597 315 aa15.94■□□□□ 0.14
CLN3-207ENST00000395653 SPP1P10451 314 aa15.94■□□□□ 0.14
CLN3-207ENST00000395653 HLA-DRB4P13762 266 aa15.94■□□□□ 0.14
CLN3-207ENST00000395653 MORN5Q5VZ52 161 aa15.94■□□□□ 0.14
CLN3-207ENST00000395653 MORN3Q6PF18 240 aaPredicted RBP15.94■□□□□ 0.14
CLN3-207ENST00000395653 HLA-DRB4X5D2U9 266 aa15.94■□□□□ 0.14
CLN3-207ENST00000395653 C17orf112F2Z3M2 114 aa15.93■□□□□ 0.14
CLN3-207ENST00000395653 IFNA5P01569 189 aa15.93■□□□□ 0.14
CLN3-207ENST00000395653 Q5BKY6 102 aa15.93■□□□□ 0.14
CLN3-207ENST00000395653 FOXI2Q6ZQN5 318 aa15.93■□□□□ 0.14
CLN3-207ENST00000395653 AQP10Q96PS8 301 aa15.93■□□□□ 0.14
CLN3-207ENST00000395653 H3BMM0 161 aa15.92■□□□□ 0.14
CLN3-207ENST00000395653 CA1P00915 261 aaPredicted RBP15.92■□□□□ 0.14
CLN3-207ENST00000395653 OR2T35Q8NGX2 323 aa15.92■□□□□ 0.14
CLN3-207ENST00000395653 PARD6GQ9BYG4 376 aaPredicted RBP15.92■□□□□ 0.14
CLN3-207ENST00000395653 SAV1Q9H4B6 383 aaPredicted RBP15.92■□□□□ 0.14
CLN3-207ENST00000395653 RPRMQ9NS64 109 aa15.92■□□□□ 0.14
CLN3-207ENST00000395653 TRAV8-2A0A0B4J237 113 aa15.91■□□□□ 0.14
CLN3-207ENST00000395653 CXCL2P19875 107 aa15.91■□□□□ 0.14
CLN3-207ENST00000395653 TMEM41BQ5BJD5 291 aa15.91■□□□□ 0.14
CLN3-207ENST00000395653 SPATA31B1PQ5VZV4 182 aa15.91■□□□□ 0.14
CLN3-207ENST00000395653 SCGB1C1Q8TD33 95 aa15.91■□□□□ 0.14
CLN3-207ENST00000395653 GDF5OSQ5U4N7 250 aa15.9■□□□□ 0.14
CLN3-207ENST00000395653 LCN15Q6UWW0 184 aa15.9■□□□□ 0.14
CLN3-207ENST00000395653 C20orf173Q96LM9 149 aa15.9■□□□□ 0.14
CLN3-207ENST00000395653 WFDC1Q9HC57 220 aa15.9■□□□□ 0.14
CLN3-207ENST00000395653 AGRNO00468 2067 aa15.89■□□□□ 0.13
CLN3-207ENST00000395653 IGLC2P0DOY2 106 aa15.89■□□□□ 0.13
CLN3-207ENST00000395653 DEFB1P60022 68 aa15.89■□□□□ 0.13
CLN3-207ENST00000395653 GCSAMLQ5JQS6 135 aa15.89■□□□□ 0.13
CLN3-207ENST00000395653 CLUHP3Q96NS8 147 aa15.89■□□□□ 0.13
CLN3-207ENST00000395653 HRH4Q9H3N8 390 aa15.89■□□□□ 0.13
CLN3-207ENST00000395653 TRAV5A0A0B4J249 113 aa15.88■□□□□ 0.13
CLN3-207ENST00000395653 GIG44P09565 113 aaPredicted RBP15.88■□□□□ 0.13
CLN3-207ENST00000395653 NUTF2P61970 127 aaKnown RBP15.88■□□□□ 0.13
CLN3-207ENST00000395653 EBLN2Q6P2I7 272 aa15.88■□□□□ 0.13
CLN3-207ENST00000395653 LRRC20Q8TCA0 184 aa15.88■□□□□ 0.13
CLN3-207ENST00000395653 A0A0J9YX75 114 aa15.87■□□□□ 0.13
CLN3-207ENST00000395653 C4BPBP20851 252 aa15.87■□□□□ 0.13
CLN3-207ENST00000395653 ZNF266Q14584 549 aa15.87■□□□□ 0.13
CLN3-207ENST00000395653 FAM78BQ5VT40 261 aa15.87■□□□□ 0.13
CLN3-207ENST00000395653 IGFL4Q6B9Z1 124 aa15.87■□□□□ 0.13
CLN3-207ENST00000395653 INO80EQ8NBZ0 244 aaPredicted RBP15.87■□□□□ 0.13
CLN3-207ENST00000395653 SLC50A1Q9BRV3 221 aa15.87■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms