RNA–Protein interactions for RNA: ENST00000389856.9

CCDC88C-203, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,641 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-203ENST00000389856 TRBV7-1A0A0A6YYK4 115 aa14.23□□□□□ -0.13
CCDC88C-203ENST00000389856 C15orf32Q32M92 178 aa14.23□□□□□ -0.13
CCDC88C-203ENST00000389856 C19orf54Q5BKX5 351 aa14.23□□□□□ -0.13
CCDC88C-203ENST00000389856 OR5AU1Q8NGC0 362 aa14.23□□□□□ -0.13
CCDC88C-203ENST00000389856 OR1B1Q8NGR6 318 aa14.23□□□□□ -0.13
CCDC88C-203ENST00000389856 PAXXQ9BUH6 204 aa14.23□□□□□ -0.13
CCDC88C-203ENST00000389856 PRSS22Q9GZN4 317 aa14.23□□□□□ -0.13
CCDC88C-203ENST00000389856 YAE1D1Q9NRH1 226 aa14.23□□□□□ -0.13
CCDC88C-203ENST00000389856 CSPG4Q6UVK1 2322 aa14.22□□□□□ -0.13
CCDC88C-203ENST00000389856 MAP1AP78559 2803 aaPredicted RBP14.22□□□□□ -0.13
CCDC88C-203ENST00000389856 LINC01548A6NM66 108 aa14.22□□□□□ -0.13
CCDC88C-203ENST00000389856 GGTLC3B5MD39 225 aa14.22□□□□□ -0.13
CCDC88C-203ENST00000389856 ORM2P19652 201 aa14.22□□□□□ -0.13
CCDC88C-203ENST00000389856 CRYBB3P26998 211 aa14.22□□□□□ -0.13
CCDC88C-203ENST00000389856 ATP5G2Q06055 141 aa14.22□□□□□ -0.13
CCDC88C-203ENST00000389856 CENPWQ5EE01 88 aa14.22□□□□□ -0.13
CCDC88C-203ENST00000389856 HIGD1AQ9Y241 93 aa14.22□□□□□ -0.13
CCDC88C-203ENST00000389856 XKRY2A2RUG3 117 aa14.21□□□□□ -0.13
CCDC88C-203ENST00000389856 PGPEP1LA6NFU8 196 aa14.21□□□□□ -0.13
CCDC88C-203ENST00000389856 CYSRT1A8MQ03 144 aa14.21□□□□□ -0.13
CCDC88C-203ENST00000389856 K7EN84 100 aa14.21□□□□□ -0.13
CCDC88C-203ENST00000389856 ISLRO14498 428 aa14.21□□□□□ -0.13
CCDC88C-203ENST00000389856 HOXA3O43365 443 aaPredicted RBP14.21□□□□□ -0.13
CCDC88C-203ENST00000389856 IGKV1-17P01599 117 aa14.21□□□□□ -0.13
CCDC88C-203ENST00000389856 PSG1P11464 419 aa14.21□□□□□ -0.13
CCDC88C-203ENST00000389856 BLCAPP62952 87 aa14.21□□□□□ -0.13
CCDC88C-203ENST00000389856 OR10D4PQ8NGN7 298 aa14.21□□□□□ -0.13
CCDC88C-203ENST00000389856 USMG5Q96IX5 58 aa14.21□□□□□ -0.13
CCDC88C-203ENST00000389856 GSN-AS1Q9NRJ2 163 aa14.21□□□□□ -0.13
CCDC88C-203ENST00000389856 TMEM160Q9NX00 188 aa14.21□□□□□ -0.13
CCDC88C-203ENST00000389856 CDC42EP3Q9UKI2 254 aa14.21□□□□□ -0.13
CCDC88C-203ENST00000389856 TRAPPC1Q9Y5R8 145 aa14.21□□□□□ -0.13
CCDC88C-203ENST00000389856 CCDC168Q8NDH2 2452 aa14.21□□□□□ -0.14
CCDC88C-203ENST00000389856 GCGP01275 180 aa14.2□□□□□ -0.14
CCDC88C-203ENST00000389856 LYZP61626 148 aa14.2□□□□□ -0.14
CCDC88C-203ENST00000389856 SUMO1P63165 101 aaKnown RBP14.2□□□□□ -0.14
CCDC88C-203ENST00000389856 RPEL1Q2QD12 228 aa14.2□□□□□ -0.14
CCDC88C-203ENST00000389856 PATE2Q6UY27 113 aa14.2□□□□□ -0.14
CCDC88C-203ENST00000389856 ZNF502Q8TBZ5 544 aa14.2□□□□□ -0.14
CCDC88C-203ENST00000389856 AURKAIP1Q9NWT8 199 aaPredicted RBP14.2□□□□□ -0.14
CCDC88C-203ENST00000389856 TMEM89A2RUT3 159 aa14.19□□□□□ -0.14
CCDC88C-203ENST00000389856 TRGV3P03979 118 aa14.19□□□□□ -0.14
CCDC88C-203ENST00000389856 CNN1P51911 297 aaKnown RBP14.19□□□□□ -0.14
CCDC88C-203ENST00000389856 FAM209BQ5JX69 171 aa14.19□□□□□ -0.14
CCDC88C-203ENST00000389856 LINC00305Q7Z4B0 112 aa14.19□□□□□ -0.14
CCDC88C-203ENST00000389856 SMIM12Q96EX1 92 aa14.19□□□□□ -0.14
CCDC88C-203ENST00000389856 MAST4O15021 2626 aa14.19□□□□□ -0.14
CCDC88C-203ENST00000389856 PDZD2O15018 2839 aa14.19□□□□□ -0.14
CCDC88C-203ENST00000389856 A0A0G2JLM5 398 aa14.19□□□□□ -0.14
CCDC88C-203ENST00000389856 ERVFC1-1P60608 527 aa14.19□□□□□ -0.14
CCDC88C-203ENST00000389856 PYY3Q5JQD4 70 aa14.19□□□□□ -0.14
CCDC88C-203ENST00000389856 GFI1BQ5VTD9 330 aa14.19□□□□□ -0.14
CCDC88C-203ENST00000389856 SIGLECL1Q8N7X8 197 aa14.19□□□□□ -0.14
CCDC88C-203ENST00000389856 IGF2BP2-AS1Q96M15 143 aa14.19□□□□□ -0.14
CCDC88C-203ENST00000389856 PACRGQ96M98 296 aaPredicted RBP14.19□□□□□ -0.14
CCDC88C-203ENST00000389856 HIST1H2BLQ99880 126 aa14.19□□□□□ -0.14
CCDC88C-203ENST00000389856 GSX1Q9H4S2 264 aaPredicted RBP14.19□□□□□ -0.14
CCDC88C-203ENST00000389856 FABP4P15090 132 aa14.18□□□□□ -0.14
CCDC88C-203ENST00000389856 FXYD5Q96DB9 178 aa14.18□□□□□ -0.14
CCDC88C-203ENST00000389856 RNF125Q96EQ8 232 aa14.18□□□□□ -0.14
CCDC88C-203ENST00000389856 MS4A10Q96PG2 267 aa14.18□□□□□ -0.14
CCDC88C-203ENST00000389856 CHRDL1Q9BU40 450 aa14.18□□□□□ -0.14
CCDC88C-203ENST00000389856 V9GYV3 84 aa14.18□□□□□ -0.14
CCDC88C-203ENST00000389856 OR2T8A6NH00 312 aa14.17□□□□□ -0.14
CCDC88C-203ENST00000389856 PPIFP30405 207 aaKnown RBP14.17□□□□□ -0.14
CCDC88C-203ENST00000389856 TPPP2P59282 170 aa14.17□□□□□ -0.14
CCDC88C-203ENST00000389856 SLC35B1P78383 322 aa14.17□□□□□ -0.14
CCDC88C-203ENST00000389856 CSMD2Q7Z408 3487 aa14.17□□□□□ -0.14
CCDC88C-203ENST00000389856 VPS13CQ709C8 3753 aa14.16□□□□□ -0.14
CCDC88C-203ENST00000389856 TRAV5A0A0B4J249 113 aa14.16□□□□□ -0.14
CCDC88C-203ENST00000389856 MT-ND6P03923 174 aa14.16□□□□□ -0.14
CCDC88C-203ENST00000389856 IL4P05112 153 aa14.16□□□□□ -0.14
CCDC88C-203ENST00000389856 RELQ04864 619 aaPredicted RBP14.16□□□□□ -0.14
CCDC88C-203ENST00000389856 KRTAP1-1Q07627 177 aa14.16□□□□□ -0.14
CCDC88C-203ENST00000389856 WDR73Q6P4I2 378 aa14.16□□□□□ -0.14
CCDC88C-203ENST00000389856 ZNF600Q6ZNG1 722 aa14.16□□□□□ -0.14
CCDC88C-203ENST00000389856 FAM231DQ6ZW35 169 aa14.16□□□□□ -0.14
CCDC88C-203ENST00000389856 ZNF329Q86UD4 541 aa14.16□□□□□ -0.14
CCDC88C-203ENST00000389856 S4R3C0 116 aa14.16□□□□□ -0.14
CCDC88C-203ENST00000389856 WI2-2373I1.2A0A1W2PRP0 233 aa14.15□□□□□ -0.14
CCDC88C-203ENST00000389856 F8W735 103 aaPredicted RBP14.15□□□□□ -0.14
CCDC88C-203ENST00000389856 PEX7O00628 323 aa14.15□□□□□ -0.14
CCDC88C-203ENST00000389856 PF4V1P10720 104 aa14.15□□□□□ -0.14
CCDC88C-203ENST00000389856 GPR183P32249 361 aa14.15□□□□□ -0.14
CCDC88C-203ENST00000389856 MYCNOSP40205 109 aa14.15□□□□□ -0.14
CCDC88C-203ENST00000389856 CTAG1AP78358 180 aa14.15□□□□□ -0.14
CCDC88C-203ENST00000389856 MORN5Q5VZ52 161 aa14.15□□□□□ -0.14
CCDC88C-203ENST00000389856 TMEM18Q96B42 140 aa14.15□□□□□ -0.14
CCDC88C-203ENST00000389856 LINC00527Q9UJ94 153 aa14.15□□□□□ -0.14
CCDC88C-203ENST00000389856 ITPR2Q14571 2701 aa14.15□□□□□ -0.14
CCDC88C-203ENST00000389856 IGLV1-40P01703 118 aa14.15□□□□□ -0.14
CCDC88C-203ENST00000389856 IGLV2-8P01709 118 aa14.15□□□□□ -0.14
CCDC88C-203ENST00000389856 CTSGP08311 255 aa14.15□□□□□ -0.14
CCDC88C-203ENST00000389856 ZNF491Q8N8L2 437 aa14.15□□□□□ -0.14
CCDC88C-203ENST00000389856 NOL4LQ96MY1 436 aaPredicted RBP14.15□□□□□ -0.14
CCDC88C-203ENST00000389856 GNB1LQ9BYB4 327 aa14.15□□□□□ -0.14
CCDC88C-203ENST00000389856 MRPL27Q9P0M9 148 aaKnown RBP14.15□□□□□ -0.14
CCDC88C-203ENST00000389856 TMEM14CQ9P0S9 112 aa14.15□□□□□ -0.14
CCDC88C-203ENST00000389856 FLNAP21333 2647 aaKnown RBP14.15□□□□□ -0.14
CCDC88C-203ENST00000389856 BMPR1BO00238 502 aa14.14□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 62.4 ms