RNA–Protein interactions for RNA: ENST00000373602.9

CCDC28B-201, Transcript of coiled-coil domain containing 28B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28B, Length 1,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-201ENST00000373602 FAM78BQ5VT40 261 aa15.61■□□□□ 0.09
CCDC28B-201ENST00000373602 OR10P1Q8NGE3 313 aa15.61■□□□□ 0.09
CCDC28B-201ENST00000373602 SHANK2-AS3Q9BTD1 123 aa15.61■□□□□ 0.09
CCDC28B-201ENST00000373602 SCRT1Q9BWW7 348 aa15.61■□□□□ 0.09
CCDC28B-201ENST00000373602 NPVFQ9HCQ7 196 aa15.61■□□□□ 0.09
CCDC28B-201ENST00000373602 HIGD1AQ9Y241 93 aa15.61■□□□□ 0.09
CCDC28B-201ENST00000373602 SMIM9A6NGZ8 99 aa15.6■□□□□ 0.09
CCDC28B-201ENST00000373602 HYPMO75409 117 aa15.6■□□□□ 0.09
CCDC28B-201ENST00000373602 DEDDO75618 318 aa15.6■□□□□ 0.09
CCDC28B-201ENST00000373602 MBPP02686 304 aaPredicted RBP15.6■□□□□ 0.09
CCDC28B-201ENST00000373602 LINC00869P0C866 280 aa15.6■□□□□ 0.09
CCDC28B-201ENST00000373602 RAP2BP61225 183 aa15.6■□□□□ 0.09
CCDC28B-201ENST00000373602 C12orf74Q32Q52 190 aa15.6■□□□□ 0.09
CCDC28B-201ENST00000373602 SLC35B3Q9H1N7 401 aa15.6■□□□□ 0.09
CCDC28B-201ENST00000373602 C7orf66A4D0T2 115 aa15.59■□□□□ 0.09
CCDC28B-201ENST00000373602 A8MTW9 85 aa15.59■□□□□ 0.09
CCDC28B-201ENST00000373602 K7EPK0 472 aa15.59■□□□□ 0.09
CCDC28B-201ENST00000373602 CCDC32Q9BV29 185 aa15.59■□□□□ 0.09
CCDC28B-201ENST00000373602 MGAT4CQ9UBM8 478 aa15.59■□□□□ 0.09
CCDC28B-201ENST00000373602 KMT2AQ03164 3969 aa15.58■□□□□ 0.09
CCDC28B-201ENST00000373602 TRAV6A0A075B6T7 132 aa15.58■□□□□ 0.08
CCDC28B-201ENST00000373602 CCSO14618 274 aa15.58■□□□□ 0.08
CCDC28B-201ENST00000373602 RPL7P18124 248 aaKnown RBP15.58■□□□□ 0.08
CCDC28B-201ENST00000373602 ARL16Q0P5N6 197 aa15.58■□□□□ 0.08
CCDC28B-201ENST00000373602 TEPPQ6URK8 271 aa15.58■□□□□ 0.08
CCDC28B-201ENST00000373602 IGHV3OR16-12A0A075B7B8 117 aa15.57■□□□□ 0.08
CCDC28B-201ENST00000373602 TRAV8-2A0A0B4J237 113 aa15.57■□□□□ 0.08
CCDC28B-201ENST00000373602 OR5G3P0C626 314 aa15.57■□□□□ 0.08
CCDC28B-201ENST00000373602 ZNF846Q147U1 533 aa15.57■□□□□ 0.08
CCDC28B-201ENST00000373602 ZNF767PQ75MW2 155 aa15.57■□□□□ 0.08
CCDC28B-201ENST00000373602 ZNF431Q8TF32 576 aaPredicted RBP15.57■□□□□ 0.08
CCDC28B-201ENST00000373602 SEC22CQ9BRL7 303 aa15.57■□□□□ 0.08
CCDC28B-201ENST00000373602 GGACTQ9BVM4 153 aa15.57■□□□□ 0.08
CCDC28B-201ENST00000373602 NUDT15Q9NV35 164 aa15.57■□□□□ 0.08
CCDC28B-201ENST00000373602 TMEM189A5PLL7 270 aa15.56■□□□□ 0.08
CCDC28B-201ENST00000373602 SLC38A11Q08AI6 406 aa15.56■□□□□ 0.08
CCDC28B-201ENST00000373602 IGFL4Q6B9Z1 124 aa15.56■□□□□ 0.08
CCDC28B-201ENST00000373602 AMTNQ6UX39 209 aa15.56■□□□□ 0.08
CCDC28B-201ENST00000373602 PATE2Q6UY27 113 aa15.56■□□□□ 0.08
CCDC28B-201ENST00000373602 LINC00299Q6ZSB3 139 aa15.56■□□□□ 0.08
CCDC28B-201ENST00000373602 C1orf158Q8N1D5 194 aa15.56■□□□□ 0.08
CCDC28B-201ENST00000373602 UHRF2Q96PU4 802 aa15.56■□□□□ 0.08
CCDC28B-201ENST00000373602 RNF126Q9BV68 326 aa15.56■□□□□ 0.08
CCDC28B-201ENST00000373602 GOLT1BQ9Y3E0 138 aa15.56■□□□□ 0.08
CCDC28B-201ENST00000373602 RFNGQ9Y644 331 aa15.56■□□□□ 0.08
CCDC28B-201ENST00000373602 VPS13DQ5THJ4 4388 aa15.55■□□□□ 0.08
CCDC28B-201ENST00000373602 IGHV4-4A0A075B6R2 117 aa15.55■□□□□ 0.08
CCDC28B-201ENST00000373602 PRR20EP86478 221 aa15.55■□□□□ 0.08
CCDC28B-201ENST00000373602 PRR20CP86479 221 aa15.55■□□□□ 0.08
CCDC28B-201ENST00000373602 PRR20DP86480 221 aa15.55■□□□□ 0.08
CCDC28B-201ENST00000373602 PRR20BP86481 221 aa15.55■□□□□ 0.08
CCDC28B-201ENST00000373602 PRR20AP86496 221 aa15.55■□□□□ 0.08
CCDC28B-201ENST00000373602 FGL1Q08830 312 aa15.55■□□□□ 0.08
CCDC28B-201ENST00000373602 S100A7AQ86SG5 101 aa15.55■□□□□ 0.08
CCDC28B-201ENST00000373602 ARL6Q9H0F7 186 aa15.55■□□□□ 0.08
CCDC28B-201ENST00000373602 A0A087X0K7 114 aa15.54■□□□□ 0.08
CCDC28B-201ENST00000373602 DEFB131BA0A096LNP1 70 aa15.54■□□□□ 0.08
CCDC28B-201ENST00000373602 FAM25EA8MYX2 175 aa15.54■□□□□ 0.08
CCDC28B-201ENST00000373602 L7N2F9 121 aa15.54■□□□□ 0.08
CCDC28B-201ENST00000373602 DUSP14O95147 198 aaKnown RBP15.54■□□□□ 0.08
CCDC28B-201ENST00000373602 H2AFB2P0C5Z0 115 aa15.54■□□□□ 0.08
CCDC28B-201ENST00000373602 SPART-AS1P0CW21 52 aa15.54■□□□□ 0.08
CCDC28B-201ENST00000373602 VAMP2P63027 116 aa15.54■□□□□ 0.08
CCDC28B-201ENST00000373602 PXDC1Q5TGL8 231 aa15.54■□□□□ 0.08
CCDC28B-201ENST00000373602 ZNF546Q86UE3 836 aa15.54■□□□□ 0.08
CCDC28B-201ENST00000373602 C12orf45Q8N5I9 185 aaPredicted RBP15.54■□□□□ 0.08
CCDC28B-201ENST00000373602 RNF182Q8N6D2 247 aa15.54■□□□□ 0.08
CCDC28B-201ENST00000373602 ARV1Q9H2C2 271 aa15.54■□□□□ 0.08
CCDC28B-201ENST00000373602 LSM5Q9Y4Y9 91 aaKnown RBP15.54■□□□□ 0.08
CCDC28B-201ENST00000373602 GOSR2O14653 212 aa15.53■□□□□ 0.08
CCDC28B-201ENST00000373602 CNN1P51911 297 aaKnown RBP15.53■□□□□ 0.08
CCDC28B-201ENST00000373602 EMP1P54849 157 aa15.53■□□□□ 0.08
CCDC28B-201ENST00000373602 C11orf1Q9H5F2 150 aa15.53■□□□□ 0.08
CCDC28B-201ENST00000373602 RNF24Q9Y225 148 aa15.53■□□□□ 0.08
CCDC28B-201ENST00000373602 C5orf51A6NDU8 294 aa15.52■□□□□ 0.08
CCDC28B-201ENST00000373602 AGPAT2O15120 278 aa15.52■□□□□ 0.08
CCDC28B-201ENST00000373602 AMBPP02760 352 aa15.52■□□□□ 0.08
CCDC28B-201ENST00000373602 OR11H7Q8NGC8 314 aa15.52■□□□□ 0.08
CCDC28B-201ENST00000373602 C2orf50Q96LR7 162 aa15.52■□□□□ 0.08
CCDC28B-201ENST00000373602 IGF2BP2-AS1Q96M15 143 aa15.52■□□□□ 0.08
CCDC28B-201ENST00000373602 FAM240BA0A1B0GVZ2 78 aa15.51■□□□□ 0.07
CCDC28B-201ENST00000373602 MRPS12O15235 138 aaKnown RBP15.51■□□□□ 0.07
CCDC28B-201ENST00000373602 HBE1P02100 147 aa15.51■□□□□ 0.07
CCDC28B-201ENST00000373602 MGST2Q99735 147 aa15.51■□□□□ 0.07
CCDC28B-201ENST00000373602 DKK2Q9UBU2 259 aa15.51■□□□□ 0.07
CCDC28B-201ENST00000373602 TEX48A0A1B0GUV7 120 aa15.5■□□□□ 0.07
CCDC28B-201ENST00000373602 CXCL3P19876 107 aa15.5■□□□□ 0.07
CCDC28B-201ENST00000373602 BCAP31P51572 246 aa15.5■□□□□ 0.07
CCDC28B-201ENST00000373602 ZNF738Q8NE65 137 aa15.5■□□□□ 0.07
CCDC28B-201ENST00000373602 S100ZQ8WXG8 99 aa15.5■□□□□ 0.07
CCDC28B-201ENST00000373602 LOC102723971A0A1B0GUV8 181 aa15.49■□□□□ 0.07
CCDC28B-201ENST00000373602 FAM24AA6NFZ4 105 aa15.49■□□□□ 0.07
CCDC28B-201ENST00000373602 CRXO43186 299 aaPredicted RBP15.49■□□□□ 0.07
CCDC28B-201ENST00000373602 CAV2P51636 162 aa15.49■□□□□ 0.07
CCDC28B-201ENST00000373602 IL15RAQ13261 267 aa15.49■□□□□ 0.07
CCDC28B-201ENST00000373602 PSG3Q16557 428 aa15.49■□□□□ 0.07
CCDC28B-201ENST00000373602 SPINK13Q1W4C9 94 aa15.49■□□□□ 0.07
CCDC28B-201ENST00000373602 RRN3P1Q2M238 152 aa15.49■□□□□ 0.07
CCDC28B-201ENST00000373602 FAM222AQ5U5X8 452 aa15.49■□□□□ 0.07
CCDC28B-201ENST00000373602 MZT2BQ6NZ67 158 aa15.49■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 47.3 ms